Wall clock time and date at job start Sat Apr 11 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47256 * 2 1 4 4 O 1.21281 * 119.99886 * 359.97438 * 3 2 1 5 5 N 1.34780 * 120.00210 * 179.97438 * 3 2 1 6 6 C 1.46494 * 120.00145 * 179.97438 * 5 3 2 7 7 C 1.50697 * 109.47169 * 180.02562 * 6 5 3 8 8 O 1.21283 * 119.99738 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00129 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00221 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47424 * 179.97438 * 10 9 7 12 12 N 1.46491 * 109.47214 * 179.97438 * 11 10 9 13 13 C 1.36939 * 120.00101 * 89.99780 * 12 11 10 14 14 H 1.08002 * 120.00681 * 217.42246 * 13 12 11 15 15 C 1.38813 * 119.99610 * 37.42017 * 13 12 11 16 16 N 1.31621 * 120.00430 * 21.26086 * 15 13 12 17 17 Si 1.86802 * 119.99960 * 201.25698 * 15 13 12 18 18 H 1.48504 * 109.47191 * 59.99744 * 17 15 13 19 19 H 1.48502 * 109.47218 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47289 * 300.00423 * 17 15 13 21 21 C 1.46500 * 120.00132 * 269.99827 * 12 11 10 22 22 C 1.54251 * 108.89470 * 237.66720 * 21 12 11 23 23 C 1.50474 * 108.52269 * 159.26583 * 22 21 12 24 24 C 1.54069 * 112.50100 * 94.14945 * 23 22 21 25 25 C 1.54061 * 112.81700 * 318.28446 * 24 23 22 26 26 C 1.50481 * 112.49517 * 318.28390 * 25 24 23 27 27 C 1.45543 * 108.89747 * 114.78689 * 21 12 11 28 28 H 1.08998 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47210 * 300.00417 * 1 2 3 30 30 H 1.09001 * 109.47028 * 60.00386 * 1 2 3 31 31 H 1.08998 * 109.47490 * 239.99751 * 2 1 3 32 32 H 1.09010 * 109.46883 * 119.99737 * 2 1 3 33 33 H 0.97005 * 119.99667 * 359.97438 * 5 3 2 34 34 H 1.08998 * 109.46989 * 59.99784 * 6 5 3 35 35 H 1.09001 * 109.46938 * 300.00009 * 6 5 3 36 36 H 0.96999 * 119.99670 * 359.97438 * 9 7 6 37 37 H 1.08998 * 109.47549 * 59.99436 * 10 9 7 38 38 H 1.09001 * 109.46898 * 299.99343 * 10 9 7 39 39 H 1.08998 * 109.47008 * 59.99362 * 11 10 9 40 40 H 1.09001 * 109.46756 * 299.99687 * 11 10 9 41 41 H 0.97001 * 119.99891 * 174.92820 * 16 15 13 42 42 H 1.08994 * 108.87529 * 356.18033 * 21 12 11 43 43 H 1.08996 * 109.62436 * 278.97592 * 22 21 12 44 44 H 1.08992 * 109.62599 * 39.55284 * 22 21 12 45 45 H 1.09003 * 108.87225 * 333.36952 * 23 22 21 46 46 H 1.09002 * 108.87344 * 214.92981 * 23 22 21 47 47 H 1.08998 * 108.81149 * 197.41923 * 24 23 22 48 48 H 1.08998 * 108.72600 * 79.08350 * 24 23 22 49 49 H 1.08999 * 108.88006 * 197.51017 * 25 24 23 50 50 H 1.08999 * 108.87862 * 79.05962 * 25 24 23 51 51 H 1.09003 * 109.62872 * 334.44239 * 26 25 24 52 52 H 1.09000 * 109.62797 * 213.86761 * 26 25 24 53 53 H 1.09003 * 108.88942 * 303.44307 * 27 21 12 54 54 H 1.08998 * 108.89838 * 62.02747 * 27 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8458 3.0483 0.0000 7 6 5.3527 3.0483 0.0001 8 8 5.9591 1.9979 0.0011 9 7 6.0266 4.2154 0.0001 10 6 7.4916 4.2154 -0.0003 11 6 8.0017 5.6579 -0.0008 12 7 9.4666 5.6579 -0.0006 13 6 10.1515 5.6574 -1.1864 14 1 11.0648 5.0890 -1.2825 15 6 9.6718 6.3875 -2.2652 16 7 8.8365 7.3850 -2.0656 17 14 10.2118 5.9545 -4.0002 18 1 9.8149 4.5569 -4.3079 19 1 9.5630 6.8778 -4.9656 20 1 11.6872 6.0847 -4.1065 21 6 10.1990 5.6584 1.2682 22 6 11.1248 6.8915 1.3101 23 6 11.4730 7.1793 2.7455 24 6 12.8006 6.5245 3.1728 25 6 12.9593 5.0896 2.6349 26 6 11.6853 4.2945 2.7308 27 6 10.9346 4.4083 1.3883 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9878 0.9298 0.0013 34 1 3.4820 3.5626 0.8894 35 1 3.4829 3.5615 -0.8905 36 1 5.5416 5.0554 -0.0003 37 1 7.8548 3.7018 -0.8904 38 1 7.8552 3.7015 0.8895 39 1 7.6386 6.1720 0.8891 40 1 7.6381 6.1715 -0.8908 41 1 8.5588 7.9413 -2.8101 42 1 9.4841 5.7274 2.0880 43 1 12.0348 6.6854 0.7468 44 1 10.6104 7.7502 0.8788 45 1 10.6732 6.8045 3.3842 46 1 11.5525 8.2581 2.8795 47 1 12.8454 6.4989 4.2615 48 1 13.6258 7.1323 2.8018 49 1 13.7356 4.5822 3.2076 50 1 13.2680 5.1365 1.5906 51 1 11.0641 4.6936 3.5327 52 1 11.9203 3.2493 2.9316 53 1 10.2343 3.5773 1.3040 54 1 11.6573 4.3443 0.5749 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483815506.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:11 Heat of formation + Delta-G solvation = -97.071614 kcal Electronic energy + Delta-G solvation = -30259.590272 eV Core-core repulsion = 26230.137334 eV Total energy + Delta-G solvation = -4029.452938 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.26046 -40.31650 -40.00519 -37.29774 -35.72645 -35.42207 -33.70902 -33.64033 -32.84422 -31.80502 -29.99673 -28.37300 -26.27347 -25.45740 -25.03158 -24.25725 -22.46691 -21.65280 -21.35420 -21.28237 -19.98113 -18.89136 -18.21914 -17.59097 -17.34180 -17.16080 -16.95551 -16.40326 -16.32612 -16.23929 -15.69356 -15.54775 -15.16756 -15.03516 -14.80425 -14.70604 -14.29055 -14.17392 -13.87985 -13.72248 -13.48250 -13.41473 -13.14559 -12.98129 -12.86801 -12.82736 -12.67122 -12.62738 -12.44455 -12.12632 -12.01961 -11.99132 -11.50398 -11.48426 -11.27113 -11.24652 -11.09241 -11.08339 -11.00085 -10.82846 -10.50246 -10.29023 -10.06714 -8.48057 -7.83165 -5.39157 1.42862 1.45801 1.47262 1.51654 1.60522 1.79239 2.42817 2.53592 3.26393 3.49346 3.69252 3.83071 3.90589 4.08718 4.19127 4.22831 4.23277 4.31076 4.33858 4.38763 4.40167 4.45931 4.49946 4.54609 4.62558 4.73163 4.74767 4.80496 4.92652 5.01121 5.01957 5.07574 5.08232 5.16336 5.19597 5.23758 5.31748 5.36874 5.38794 5.40359 5.45805 5.49903 5.50975 5.65190 5.70932 5.76316 5.76775 5.90355 6.43924 6.46802 6.53933 7.09963 7.16408 7.21452 7.89605 8.41392 9.15772 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011045 B = 0.002520 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.430347 B =11108.755980 C =12735.818381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.138 4.138 3 C 0.509 3.491 4 O -0.584 6.584 5 N -0.717 5.717 6 C 0.106 3.894 7 C 0.507 3.493 8 O -0.579 6.579 9 N -0.707 5.707 10 C 0.122 3.878 11 C 0.144 3.856 12 N -0.592 5.592 13 C -0.249 4.249 14 H 0.049 0.951 15 C -0.026 4.026 16 N -0.911 5.911 17 Si 0.941 3.059 18 H -0.287 1.287 19 H -0.293 1.293 20 H -0.279 1.279 21 C 0.177 3.823 22 C -0.101 4.101 23 C -0.112 4.112 24 C -0.109 4.109 25 C -0.116 4.116 26 C -0.106 4.106 27 C -0.115 4.115 28 H 0.086 0.914 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.416 0.584 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.414 0.586 37 H 0.032 0.968 38 H 0.048 0.952 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.251 0.749 42 H 0.049 0.951 43 H 0.041 0.959 44 H 0.031 0.969 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.072 0.928 50 H 0.042 0.958 51 H 0.069 0.931 52 H 0.068 0.932 53 H 0.039 0.961 54 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.396 -9.474 9.918 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.178 4.178 3 C 0.297 3.703 4 O -0.464 6.464 5 N -0.373 5.373 6 C -0.022 4.022 7 C 0.293 3.707 8 O -0.460 6.460 9 N -0.359 5.359 10 C -0.005 4.005 11 C 0.016 3.984 12 N -0.313 5.313 13 C -0.380 4.380 14 H 0.067 0.933 15 C -0.224 4.224 16 N -0.556 5.556 17 Si 0.771 3.229 18 H -0.214 1.214 19 H -0.219 1.219 20 H -0.205 1.205 21 C 0.072 3.928 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.146 4.146 25 C -0.153 4.153 26 C -0.144 4.144 27 C -0.154 4.154 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.255 0.745 34 H 0.130 0.870 35 H 0.123 0.877 36 H 0.251 0.749 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.050 0.950 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.092 0.908 48 H 0.074 0.926 49 H 0.090 0.910 50 H 0.061 0.939 51 H 0.088 0.912 52 H 0.086 0.914 53 H 0.058 0.942 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.593 -9.440 9.797 15.118 hybrid contribution 0.509 0.298 -1.556 1.664 sum -6.083 -9.142 8.241 13.729 Atomic orbital electron populations 1.21541 0.93069 1.02753 1.02035 1.21704 0.98381 0.91045 1.06641 1.21525 0.81030 0.93350 0.74355 1.90690 1.56116 1.48075 1.51502 1.45858 1.07896 1.08254 1.75246 1.21043 0.89082 0.86234 1.05821 1.20882 0.90469 0.83762 0.75592 1.90661 1.70923 1.32354 1.52022 1.45885 1.07805 1.08868 1.73305 1.21930 0.78043 1.01086 0.99431 1.20934 0.84540 0.91414 1.01463 1.44028 1.00425 1.85326 1.01474 1.18923 1.07419 1.22614 0.89043 0.93312 1.25635 1.00066 0.95549 1.01159 1.69965 1.37608 1.17067 1.30927 0.85753 0.78040 0.77222 0.81889 1.21370 1.21877 1.20474 1.19522 0.92819 0.93392 0.87115 1.21432 0.98716 0.97880 0.96014 1.21303 0.98131 0.99957 0.95596 1.21862 0.96618 0.95346 1.00809 1.21308 0.97692 0.95575 1.00755 1.21249 0.96723 1.00016 0.96427 1.20845 0.99114 0.97968 0.97433 0.89562 0.93243 0.93434 0.86734 0.86478 0.74548 0.86965 0.87687 0.74921 0.94920 0.93371 0.94065 0.90700 0.93914 0.93279 0.93982 0.95029 0.92029 0.92613 0.90772 0.92558 0.90976 0.93883 0.91201 0.91375 0.94240 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.20 71.98 0.66 -1.25 16 2 C -0.14 -1.83 6.42 29.85 0.19 -1.64 16 3 C 0.51 11.07 7.83 87.66 0.69 11.76 16 4 O -0.58 -17.14 15.98 -3.03 -0.05 -17.18 16 5 N -0.72 -15.45 5.53 -466.80 -2.58 -18.03 16 6 C 0.11 2.40 6.15 85.63 0.53 2.92 16 7 C 0.51 14.81 7.90 87.66 0.69 15.50 16 8 O -0.58 -20.80 15.67 -3.04 -0.05 -20.85 16 9 N -0.71 -21.30 5.56 -463.06 -2.57 -23.87 16 10 C 0.12 4.65 6.00 86.38 0.52 5.17 16 11 C 0.14 6.07 5.38 86.38 0.46 6.54 16 12 N -0.59 -27.02 2.28 -688.47 -1.57 -28.59 16 13 C -0.25 -12.84 8.43 84.03 0.71 -12.13 16 14 H 0.05 2.59 6.99 -2.91 -0.02 2.57 16 15 C -0.03 -1.40 4.96 84.86 0.42 -0.98 16 16 N -0.91 -49.85 11.45 21.65 0.25 -49.60 16 17 Si 0.94 43.79 29.61 68.60 2.03 45.82 16 18 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 C 0.18 6.79 2.13 43.14 0.09 6.88 16 22 C -0.10 -3.82 4.54 30.20 0.14 -3.69 16 23 C -0.11 -3.19 5.31 30.14 0.16 -3.03 16 24 C -0.11 -2.59 5.85 31.31 0.18 -2.41 16 25 C -0.12 -2.90 5.31 30.14 0.16 -2.74 16 26 C -0.11 -2.81 5.61 30.20 0.17 -2.64 16 27 C -0.11 -4.02 4.51 28.73 0.13 -3.89 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 0.81 8.10 -2.38 -0.02 0.79 16 30 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 31 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.42 8.50 7.44 -92.70 -0.69 7.81 16 34 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.41 10.31 8.47 -92.71 -0.79 9.53 16 37 H 0.03 1.46 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.04 1.61 7.87 -2.39 -0.02 1.59 16 40 H 0.08 3.63 5.50 -2.39 -0.01 3.62 16 41 H 0.25 13.52 8.32 -92.71 -0.77 12.75 16 42 H 0.05 1.79 7.05 -2.39 -0.02 1.78 16 43 H 0.04 1.69 6.98 -2.39 -0.02 1.68 16 44 H 0.03 1.40 8.12 -2.39 -0.02 1.38 16 45 H 0.06 1.66 6.63 -2.39 -0.02 1.64 16 46 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 50 H 0.04 1.25 6.63 -2.39 -0.02 1.24 16 51 H 0.07 1.73 6.98 -2.39 -0.02 1.71 16 52 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 53 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 54 H 0.04 1.59 6.36 -2.39 -0.02 1.58 16 Total: -1.00 -66.56 418.31 0.78 -65.78 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -0.59 Total: 32.14 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 5.90 Total: 14.38 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -6.47 Total: -120.09 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.10 Total: -38.03 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -66.56 0.78 -65.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483815506.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.290 kcal (2) G-P(sol) polarization free energy of solvation -66.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds