Wall clock time and date at job start Sat Apr 11 2020 05:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.42630 * 2 1 4 4 C 1.54913 * 110.37131 * 122.31601 * 2 1 3 5 5 C 1.55146 * 101.65427 * 155.89763 * 4 2 1 6 6 C 1.54325 * 103.01642 * 324.34649 * 5 4 2 7 7 H 1.09002 * 109.88648 * 262.71269 * 6 5 4 8 8 C 1.53001 * 109.88426 * 141.69219 * 6 5 4 9 9 N 1.47435 * 107.23623 * 22.28289 * 6 5 4 10 10 C 1.46898 * 111.00337 * 123.25607 * 9 6 5 11 11 C 1.50696 * 109.47668 * 169.90099 * 10 9 6 12 12 O 1.21279 * 119.99840 * 351.66238 * 11 10 9 13 13 N 1.34772 * 120.00336 * 171.66271 * 11 10 9 14 14 C 1.46931 * 120.63007 * 359.71709 * 13 11 10 15 15 C 1.53629 * 108.54166 * 126.37063 * 14 13 11 16 16 C 1.53039 * 109.23976 * 54.85579 * 15 14 13 17 17 O 1.42901 * 109.44759 * 58.52725 * 16 15 14 18 18 C 1.53003 * 109.45451 * 178.48869 * 16 15 14 19 19 N 1.46499 * 109.47382 * 305.06613 * 18 16 15 20 20 C 1.36939 * 120.00238 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99507 * 0.02562 * 20 19 18 22 22 C 1.38803 * 120.00344 * 180.02562 * 20 19 18 23 23 N 1.31623 * 120.00213 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00281 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46973 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.47147 * 119.99650 * 24 22 20 27 27 H 1.48492 * 109.47441 * 239.99881 * 24 22 20 28 28 C 1.53030 * 109.54013 * 298.51012 * 16 15 14 29 29 C 1.46930 * 120.63367 * 179.97438 * 13 11 10 30 30 H 1.08996 * 109.47031 * 281.49305 * 1 2 3 31 31 H 1.09006 * 109.46233 * 41.49189 * 1 2 3 32 32 H 1.08997 * 109.47338 * 161.48677 * 1 2 3 33 33 H 1.08997 * 110.98685 * 273.98742 * 4 2 1 34 34 H 1.09003 * 110.98894 * 37.80678 * 4 2 1 35 35 H 1.09001 * 110.70099 * 82.72518 * 5 4 2 36 36 H 1.09000 * 110.70354 * 205.96506 * 5 4 2 37 37 H 1.08997 * 109.47320 * 58.66202 * 8 6 5 38 38 H 1.09005 * 109.46397 * 178.66212 * 8 6 5 39 39 H 1.09001 * 109.46769 * 298.65571 * 8 6 5 40 40 H 1.09001 * 109.47235 * 289.90783 * 10 9 6 41 41 H 1.09003 * 109.47032 * 49.89657 * 10 9 6 42 42 H 1.09000 * 109.58916 * 246.20336 * 14 13 11 43 43 H 1.08998 * 109.58416 * 6.63153 * 14 13 11 44 44 H 1.08999 * 109.63474 * 294.86771 * 15 14 13 45 45 H 1.08998 * 109.42966 * 174.72360 * 15 14 13 46 46 H 0.96701 * 114.00063 * 59.93810 * 17 16 15 47 47 H 1.09003 * 109.47315 * 65.07564 * 18 16 15 48 48 H 1.09008 * 109.46906 * 185.06867 * 18 16 15 49 49 H 0.96995 * 119.99857 * 0.02562 * 19 18 16 50 50 H 0.96997 * 120.00522 * 180.02562 * 23 22 20 51 51 H 1.08999 * 109.50082 * 301.41382 * 28 16 15 52 52 H 1.09001 * 109.52777 * 181.33300 * 28 16 15 53 53 H 1.09000 * 109.58361 * 353.37335 * 29 13 11 54 54 H 1.08996 * 109.58263 * 113.65271 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0215 0.0000 4 6 2.0692 -0.7764 1.2273 5 6 3.4786 -1.1997 0.7359 6 6 3.2535 -1.4808 -0.7648 7 1 3.1083 -2.5493 -0.9241 8 6 4.4584 -0.9934 -1.5720 9 7 2.0448 -0.7410 -1.1714 10 6 2.3358 0.1716 -2.2851 11 6 1.0448 0.7216 -2.8345 12 8 -0.0160 0.2756 -2.4515 13 7 1.0690 1.7090 -3.7514 14 6 2.3460 2.2638 -4.2206 15 6 2.3754 2.1924 -5.7550 16 6 1.1394 2.8989 -6.3165 17 8 1.1246 4.2569 -5.8719 18 6 1.1829 2.8635 -7.8455 19 7 2.4477 3.4374 -8.3115 20 6 2.7127 3.5118 -9.6530 21 1 1.9891 3.1478 -10.3673 22 6 3.9113 4.0550 -10.0945 23 7 4.7934 4.4982 -9.2239 24 14 4.2731 4.1559 -11.9243 25 1 3.1293 3.5941 -12.6868 26 1 4.4760 5.5753 -12.3113 27 1 5.5014 3.3793 -12.2296 28 6 -0.1237 2.1879 -5.8257 29 6 -0.1813 2.2550 -4.2968 30 1 -0.3633 0.2048 1.0070 31 1 -0.3632 0.7699 -0.6809 32 1 -0.3634 -0.9744 -0.3263 33 1 2.1388 -0.1272 2.1001 34 1 1.4514 -1.6489 1.4397 35 1 4.1941 -0.3889 0.8730 36 1 3.8118 -2.1006 1.2510 37 1 5.3585 -1.4991 -1.2225 38 1 4.3027 -1.2166 -2.6275 39 1 4.5720 0.0827 -1.4411 40 1 2.9581 0.9926 -1.9290 41 1 2.8633 -0.3700 -3.0702 42 1 2.4340 3.3014 -3.8986 43 1 3.1705 1.6805 -3.8105 44 1 2.3745 1.1499 -6.0732 45 1 3.2751 2.6850 -6.1237 46 1 1.8971 4.7693 -6.1471 47 1 1.1041 1.8316 -8.1875 48 1 0.3513 3.4435 -8.2461 49 1 3.0976 3.7639 -7.6699 50 1 5.6308 4.8782 -9.5325 51 1 -0.1011 1.1454 -6.1432 52 1 -1.0031 2.6769 -6.2447 53 1 -1.0249 1.6661 -3.9368 54 1 -0.2969 3.2912 -3.9787 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484965057.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:20 Heat of formation + Delta-G solvation = -75.736974 kcal Electronic energy + Delta-G solvation = -31650.556249 eV Core-core repulsion = 27622.028451 eV Total energy + Delta-G solvation = -4028.527798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.67010 -40.52239 -39.23450 -36.73548 -35.78494 -34.06589 -33.44939 -33.11386 -32.26980 -31.72604 -29.16628 -28.50492 -27.32132 -25.43368 -24.73881 -24.43410 -23.28806 -21.86160 -21.61445 -20.53187 -19.58511 -19.44338 -18.42941 -17.33748 -17.30236 -16.75503 -16.71879 -16.45219 -16.17638 -15.78446 -15.69844 -15.28016 -15.01284 -14.97153 -14.82554 -14.32118 -14.30103 -13.92947 -13.73359 -13.72138 -13.57878 -13.35462 -13.17294 -13.01482 -12.94351 -12.79478 -12.69692 -12.59211 -12.27774 -12.22642 -12.17618 -12.10638 -12.04138 -11.97445 -11.59885 -11.56819 -11.37344 -11.26347 -10.98603 -10.79753 -10.51096 -9.51602 -9.22988 -9.02243 -7.97333 -5.25262 1.47299 1.48605 1.57553 1.68124 1.96582 2.54471 2.93794 3.26240 3.40491 3.51088 3.64582 3.68009 3.74668 3.83701 3.91076 4.00030 4.07686 4.19830 4.22173 4.25859 4.31779 4.36106 4.44030 4.48053 4.49281 4.56363 4.59051 4.72276 4.76042 4.78163 4.83810 4.85090 4.89038 4.90538 4.99943 5.00169 5.04533 5.08342 5.16471 5.17717 5.21005 5.31040 5.33905 5.43566 5.49142 5.50403 5.65860 6.04711 6.12616 6.25212 6.49809 6.75443 7.28992 7.33332 8.03630 8.29910 9.25424 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018573 B = 0.002505 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.202370 B =11176.436490 C =12204.100689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.070 3.930 3 H 0.045 0.955 4 C -0.121 4.121 5 C -0.132 4.132 6 C 0.066 3.934 7 H 0.084 0.916 8 C -0.171 4.171 9 N -0.522 5.522 10 C 0.035 3.965 11 C 0.502 3.498 12 O -0.546 6.546 13 N -0.609 5.609 14 C 0.120 3.880 15 C -0.149 4.149 16 C 0.139 3.861 17 O -0.562 6.562 18 C 0.128 3.872 19 N -0.736 5.736 20 C -0.246 4.246 21 H 0.069 0.931 22 C -0.067 4.067 23 N -0.962 5.962 24 Si 0.968 3.032 25 H -0.271 1.271 26 H -0.293 1.293 27 H -0.292 1.292 28 C -0.111 4.111 29 C 0.127 3.873 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.077 0.923 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.382 0.618 47 H 0.025 0.975 48 H 0.020 0.980 49 H 0.378 0.622 50 H 0.252 0.748 51 H 0.079 0.921 52 H 0.085 0.915 53 H 0.083 0.917 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.508 -9.839 21.558 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.038 4.038 3 H 0.063 0.937 4 C -0.160 4.160 5 C -0.170 4.170 6 C -0.041 4.041 7 H 0.102 0.898 8 C -0.228 4.228 9 N -0.248 5.248 10 C -0.095 4.095 11 C 0.291 3.709 12 O -0.424 6.424 13 N -0.344 5.344 14 C -0.003 4.003 15 C -0.187 4.187 16 C 0.098 3.902 17 O -0.369 6.369 18 C 0.001 3.999 19 N -0.381 5.381 20 C -0.378 4.378 21 H 0.087 0.913 22 C -0.260 4.260 23 N -0.612 5.612 24 Si 0.797 3.203 25 H -0.196 1.196 26 H -0.220 1.220 27 H -0.219 1.219 28 C -0.149 4.149 29 C 0.004 3.996 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.135 0.865 42 H 0.096 0.904 43 H 0.121 0.879 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.231 0.769 47 H 0.043 0.957 48 H 0.037 0.963 49 H 0.212 0.788 50 H 0.061 0.939 51 H 0.098 0.902 52 H 0.103 0.897 53 H 0.102 0.898 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.066 -10.652 21.668 24.485 hybrid contribution 1.589 1.158 -1.399 2.413 sum -2.477 -9.495 20.269 22.519 Atomic orbital electron populations 1.21768 0.94178 1.02213 0.99618 1.22607 0.96067 0.95334 0.89752 0.93717 1.22745 0.96237 1.00283 0.96687 1.22862 0.96991 1.02639 0.94556 1.22515 0.87842 0.98857 0.94913 0.89831 1.22400 0.98158 1.01794 1.00484 1.63375 1.29265 1.25807 1.06325 1.22309 0.93637 0.96956 0.96625 1.21040 0.92088 0.78769 0.78978 1.90651 1.33511 1.59580 1.58650 1.48190 1.07788 1.36758 1.41633 1.21809 0.85038 1.00182 0.93236 1.22483 0.98681 1.01703 0.95883 1.21205 0.95533 0.82434 0.91034 1.86379 1.49382 1.22572 1.78588 1.21451 0.88424 0.96223 0.93839 1.42428 1.17682 1.73854 1.04092 1.19564 1.00580 1.32651 0.84985 0.91272 1.25433 0.97043 1.02018 1.01466 1.69758 1.09522 1.48106 1.33835 0.85161 0.77552 0.76856 0.80688 1.19605 1.22046 1.21932 1.21792 0.96862 1.00369 0.95884 1.21332 0.86815 0.99061 0.92357 0.92884 0.93085 0.93599 0.89685 0.90866 0.90631 0.89398 0.90590 0.91945 0.92056 0.90515 0.86476 0.90431 0.87923 0.91077 0.90795 0.76945 0.95700 0.96252 0.78755 0.93867 0.90227 0.89665 0.89830 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 7.90 71.98 0.57 -2.22 16 2 C 0.07 1.37 2.80 45.39 0.13 1.50 16 3 H 0.04 0.89 7.62 -2.39 -0.02 0.87 16 4 C -0.12 -1.74 6.45 31.98 0.21 -1.53 16 5 C -0.13 -1.58 6.47 31.78 0.21 -1.38 16 6 C 0.07 1.00 4.02 45.26 0.18 1.18 16 7 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 8 C -0.17 -2.10 7.83 71.98 0.56 -1.54 16 9 N -0.52 -10.58 4.58 -840.28 -3.85 -14.43 16 10 C 0.04 0.69 2.57 85.56 0.22 0.91 16 11 C 0.50 12.76 7.30 87.66 0.64 13.40 16 12 O -0.55 -17.05 11.46 -3.03 -0.03 -17.09 16 13 N -0.61 -14.71 2.97 -818.14 -2.43 -17.14 16 14 C 0.12 2.62 6.07 86.51 0.53 3.15 16 15 C -0.15 -4.10 4.89 30.82 0.15 -3.95 16 16 C 0.14 4.20 0.71 -10.77 -0.01 4.19 16 17 O -0.56 -17.51 11.70 -148.98 -1.74 -19.25 16 18 C 0.13 4.90 5.43 86.38 0.47 5.37 16 19 N -0.74 -34.58 5.07 -343.44 -1.74 -36.32 16 20 C -0.25 -13.21 9.99 84.03 0.84 -12.37 16 21 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 22 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 23 N -0.96 -55.36 13.06 21.65 0.28 -55.08 16 24 Si 0.97 44.79 29.55 68.60 2.03 46.82 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 28 C -0.11 -2.92 5.11 30.65 0.16 -2.76 16 29 C 0.13 3.23 6.18 86.35 0.53 3.77 16 30 H 0.05 1.03 8.07 -2.39 -0.02 1.01 16 31 H 0.05 1.42 5.67 -2.38 -0.01 1.41 16 32 H 0.04 1.22 8.06 -2.39 -0.02 1.21 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.10 8.06 -2.39 -0.02 1.08 16 35 H 0.08 0.82 7.85 -2.39 -0.02 0.80 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 0.82 6.56 -2.38 -0.02 0.80 16 39 H 0.06 0.73 6.78 -2.39 -0.02 0.72 16 40 H 0.08 1.26 6.11 -2.39 -0.01 1.25 16 41 H 0.12 2.07 6.03 -2.39 -0.01 2.06 16 42 H 0.08 1.70 7.81 -2.39 -0.02 1.68 16 43 H 0.10 1.75 5.94 -2.39 -0.01 1.73 16 44 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.07 2.34 6.53 -2.39 -0.02 2.32 16 46 H 0.38 11.98 8.19 -74.06 -0.61 11.37 16 47 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 49 H 0.38 18.06 5.55 -92.71 -0.51 17.55 16 50 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 51 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 52 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 53 H 0.08 2.22 7.01 -2.39 -0.02 2.21 16 54 H 0.07 1.84 7.82 -2.39 -0.02 1.82 16 Total: -1.00 -64.47 398.00 -1.86 -66.33 By element: Atomic # 1 Polarization: 41.88 SS G_CDS: -0.22 Total: 41.66 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 5.85 Total: 4.50 kcal Atomic # 7 Polarization: -115.23 SS G_CDS: -7.74 Total: -122.97 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -1.78 Total: -36.34 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -64.47 -1.86 -66.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484965057.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.410 kcal (2) G-P(sol) polarization free energy of solvation -64.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds