Wall clock time and date at job start Sat Apr 11 2020 05:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 110.58906 * 2 1 4 4 C 1.54932 * 110.66666 * 236.99395 * 2 1 3 5 5 C 1.54600 * 102.91769 * 203.98356 * 4 2 1 6 6 C 1.53993 * 105.14150 * 21.95463 * 5 4 2 7 7 H 1.09000 * 109.91973 * 241.67351 * 6 5 4 8 8 C 1.53000 * 109.91382 * 120.57684 * 6 5 4 9 9 N 1.47898 * 107.05646 * 1.22864 * 6 5 4 10 10 C 1.46907 * 110.99820 * 214.15197 * 9 6 5 11 11 C 1.50697 * 109.46703 * 63.15664 * 10 9 6 12 12 O 1.21276 * 120.00363 * 353.84862 * 11 10 9 13 13 N 1.34779 * 119.99843 * 173.84504 * 11 10 9 14 14 C 1.46931 * 120.62982 * 359.72148 * 13 11 10 15 15 C 1.53617 * 108.54291 * 126.36468 * 14 13 11 16 16 C 1.53049 * 109.24102 * 54.86128 * 15 14 13 17 17 O 1.42892 * 109.46068 * 58.52598 * 16 15 14 18 18 C 1.53003 * 109.46061 * 178.49173 * 16 15 14 19 19 N 1.46495 * 109.46935 * 305.06281 * 18 16 15 20 20 C 1.36932 * 120.00402 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99720 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00801 * 179.97438 * 20 19 18 23 23 N 1.31617 * 120.00410 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99518 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47486 * 89.99708 * 24 22 20 26 26 H 1.48497 * 109.47259 * 209.99926 * 24 22 20 27 27 H 1.48499 * 109.47212 * 329.99845 * 24 22 20 28 28 C 1.53043 * 109.53173 * 298.50620 * 16 15 14 29 29 C 1.46923 * 120.63083 * 179.97438 * 13 11 10 30 30 H 1.09005 * 109.46691 * 183.01177 * 1 2 3 31 31 H 1.09000 * 109.47251 * 303.01096 * 1 2 3 32 32 H 1.09000 * 109.47088 * 63.01675 * 1 2 3 33 33 H 1.08994 * 110.72520 * 85.62520 * 4 2 1 34 34 H 1.09001 * 110.87679 * 322.41184 * 4 2 1 35 35 H 1.09001 * 110.31040 * 263.03767 * 5 4 2 36 36 H 1.08998 * 110.30807 * 140.87566 * 5 4 2 37 37 H 1.08999 * 109.47139 * 61.45451 * 8 6 5 38 38 H 1.09009 * 109.47208 * 181.45662 * 8 6 5 39 39 H 1.09000 * 109.47613 * 301.45217 * 8 6 5 40 40 H 1.09006 * 109.47014 * 183.15441 * 10 9 6 41 41 H 1.08995 * 109.47286 * 303.15879 * 10 9 6 42 42 H 1.08994 * 109.58484 * 246.20025 * 14 13 11 43 43 H 1.08997 * 109.58354 * 6.62724 * 14 13 11 44 44 H 1.08997 * 109.63999 * 294.86685 * 15 14 13 45 45 H 1.09007 * 109.43430 * 174.72304 * 15 14 13 46 46 H 0.96695 * 114.00127 * 59.94013 * 17 16 15 47 47 H 1.09001 * 109.47219 * 65.06602 * 18 16 15 48 48 H 1.09002 * 109.46873 * 185.06859 * 18 16 15 49 49 H 0.97006 * 120.00141 * 0.02562 * 19 18 16 50 50 H 0.97001 * 120.00002 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.50214 * 301.40970 * 28 16 15 52 52 H 1.09004 * 109.51772 * 181.33151 * 28 16 15 53 53 H 1.08999 * 109.58866 * 353.37919 * 29 13 11 54 54 H 1.09004 * 109.58682 * 113.79905 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9134 1.0204 0.0000 4 6 2.0769 -0.7896 -1.2157 5 6 3.4870 -1.2148 -0.7457 6 6 3.4318 -1.1607 0.7923 7 1 4.1493 -0.4292 1.1641 8 6 3.7456 -2.5406 1.3739 9 7 2.0578 -0.7582 1.1631 10 6 2.0614 0.0720 2.3751 11 6 2.8141 1.3496 2.1064 12 8 3.3941 1.5015 1.0522 13 7 2.8426 2.3235 3.0376 14 6 2.1396 2.1567 4.3171 15 6 3.1362 2.4088 5.4585 16 6 3.7809 3.7841 5.2707 17 8 2.7642 4.7881 5.2540 18 6 4.7468 4.0563 6.4256 19 7 4.0382 3.9109 7.6995 20 6 4.7040 4.1078 8.8798 21 1 5.7514 4.3707 8.8715 22 6 4.0324 3.9706 10.0869 23 7 4.6725 4.1593 11.2213 24 14 2.2205 3.5165 10.1012 25 1 2.0807 2.0386 10.1400 26 1 1.5717 4.1067 11.2995 27 1 1.5685 4.0434 8.8754 28 6 4.5480 3.8131 3.9468 29 6 3.5725 3.5744 2.7906 30 1 -0.3633 -1.0263 0.0540 31 1 -0.3634 0.5599 0.8618 32 1 -0.3633 0.4663 -0.9158 33 1 2.1403 -0.1488 -2.0950 34 1 1.4589 -1.6638 -1.4209 35 1 4.2370 -0.5190 -1.1220 36 1 3.7080 -2.2281 -1.0810 37 1 4.7530 -2.8373 1.0821 38 1 3.6792 -2.5003 2.4612 39 1 3.0281 -3.2673 0.9928 40 1 1.0351 0.3074 2.6573 41 1 2.5458 -0.4714 3.1863 42 1 1.3197 2.8721 4.3794 43 1 1.7483 1.1419 4.3893 44 1 3.9089 1.6401 5.4467 45 1 2.6096 2.3811 6.4126 46 1 2.2369 4.8274 6.0635 47 1 5.5713 3.3445 6.3851 48 1 5.1377 5.0703 6.3410 49 1 3.0974 3.6744 7.7070 50 1 4.2031 4.0638 12.0648 51 1 5.3075 3.0313 3.9491 52 1 5.0266 4.7848 3.8244 53 1 4.1268 3.4954 1.8553 54 1 2.8673 4.4033 2.7308 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484965058.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:23 Heat of formation + Delta-G solvation = -81.533425 kcal Electronic energy + Delta-G solvation = -31849.849447 eV Core-core repulsion = 27821.070296 eV Total energy + Delta-G solvation = -4028.779151 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.95294 -40.57654 -38.96032 -36.83579 -35.89163 -33.84322 -33.55702 -33.47497 -32.48641 -31.92947 -29.35685 -28.75655 -27.12451 -25.13937 -24.75275 -24.55123 -23.22564 -21.79602 -21.44885 -21.04479 -20.01469 -19.91128 -18.31627 -17.36905 -17.20979 -16.80231 -16.71554 -16.43640 -16.09501 -15.99817 -15.68355 -15.39751 -15.08882 -14.93113 -14.79251 -14.43339 -14.37069 -14.08191 -13.97990 -13.66607 -13.56119 -13.51608 -13.18259 -13.07317 -12.87992 -12.84787 -12.81323 -12.63526 -12.39010 -12.29087 -12.14413 -12.11469 -11.91088 -11.88913 -11.62667 -11.54185 -11.46018 -11.31443 -11.21763 -11.01900 -10.80446 -9.63950 -9.35954 -9.26461 -8.03897 -5.40113 1.36028 1.43602 1.50713 1.51601 1.97521 2.48117 2.90839 3.18236 3.31170 3.42531 3.47458 3.67877 3.69660 3.79634 3.81134 3.94566 4.07199 4.14045 4.26680 4.29868 4.30998 4.38933 4.47795 4.51959 4.53275 4.56149 4.65760 4.71210 4.71591 4.77201 4.80051 4.83182 4.87616 4.88325 4.94255 4.99009 5.02280 5.04811 5.09417 5.17791 5.22614 5.27020 5.29049 5.40830 5.46666 5.49401 5.72430 5.96020 5.99473 6.17519 6.39231 6.70209 7.04656 7.08529 7.75918 7.97524 9.17536 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018841 B = 0.002639 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.728527 B =10608.868600 C =10853.399311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.040 3.960 3 H 0.063 0.937 4 C -0.111 4.111 5 C -0.119 4.119 6 C 0.057 3.943 7 H 0.045 0.955 8 C -0.131 4.131 9 N -0.485 5.485 10 C 0.025 3.975 11 C 0.482 3.518 12 O -0.568 6.568 13 N -0.604 5.604 14 C 0.114 3.886 15 C -0.156 4.156 16 C 0.137 3.863 17 O -0.560 6.560 18 C 0.131 3.869 19 N -0.748 5.748 20 C -0.240 4.240 21 H 0.049 0.951 22 C -0.065 4.065 23 N -0.985 5.985 24 Si 0.958 3.042 25 H -0.273 1.273 26 H -0.300 1.300 27 H -0.238 1.238 28 C -0.111 4.111 29 C 0.124 3.876 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.123 0.877 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.382 0.618 47 H 0.030 0.970 48 H 0.023 0.977 49 H 0.368 0.632 50 H 0.259 0.741 51 H 0.079 0.921 52 H 0.084 0.916 53 H 0.080 0.920 54 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.177 -11.555 -24.967 29.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.068 4.068 3 H 0.081 0.919 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.051 4.051 7 H 0.063 0.937 8 C -0.189 4.189 9 N -0.207 5.207 10 C -0.107 4.107 11 C 0.271 3.729 12 O -0.449 6.449 13 N -0.337 5.337 14 C -0.008 4.008 15 C -0.195 4.195 16 C 0.095 3.905 17 O -0.367 6.367 18 C 0.004 3.996 19 N -0.396 5.396 20 C -0.371 4.371 21 H 0.067 0.933 22 C -0.257 4.257 23 N -0.635 5.635 24 Si 0.784 3.216 25 H -0.199 1.199 26 H -0.227 1.227 27 H -0.162 1.162 28 C -0.149 4.149 29 C 0.001 3.999 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.141 0.859 41 H 0.135 0.865 42 H 0.102 0.898 43 H 0.129 0.871 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.231 0.769 47 H 0.048 0.952 48 H 0.041 0.959 49 H 0.203 0.797 50 H 0.067 0.933 51 H 0.097 0.903 52 H 0.103 0.897 53 H 0.099 0.901 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.771 -11.788 -25.883 30.073 hybrid contribution 0.079 0.932 1.452 1.727 sum -9.692 -10.856 -24.431 28.437 Atomic orbital electron populations 1.21665 0.93080 1.02464 1.01661 1.23128 0.96032 0.97495 0.90140 0.91898 1.22430 0.95817 0.99885 0.96802 1.22336 0.97463 1.01679 0.94267 1.22415 0.89763 0.97119 0.95811 0.93679 1.21754 1.01200 0.95324 1.00596 1.65107 1.18688 1.34275 1.02672 1.22607 1.02323 0.89366 0.96360 1.22367 0.80893 0.86402 0.83265 1.90626 1.46967 1.81126 1.26177 1.48382 1.51321 1.16780 1.17206 1.21926 0.94200 1.04086 0.80585 1.22585 1.00293 0.97290 0.99316 1.21247 0.87633 0.87566 0.94014 1.86425 1.49058 1.57545 1.43644 1.21432 0.94941 0.98355 0.84841 1.42534 1.09677 1.85898 1.01471 1.18956 0.94507 1.39045 0.84593 0.93289 1.25624 1.03377 1.02213 0.94456 1.69905 1.38143 1.57876 0.97604 0.85386 0.79689 0.78422 0.78142 1.19922 1.22674 1.16204 1.21781 0.97525 1.03474 0.92144 1.21356 0.94748 0.85937 0.97848 0.91603 0.92997 0.91733 0.91383 0.90252 0.92928 0.90177 0.92033 0.92920 0.91743 0.85920 0.86515 0.89751 0.87107 0.90502 0.90244 0.76918 0.95209 0.95885 0.79680 0.93271 0.90257 0.89748 0.90123 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.92 9.47 71.98 0.68 -1.24 16 2 C 0.04 0.74 2.50 45.26 0.11 0.85 16 3 H 0.06 1.53 5.06 -2.38 -0.01 1.51 16 4 C -0.11 -1.87 6.50 31.80 0.21 -1.66 16 5 C -0.12 -2.16 6.57 31.47 0.21 -1.95 16 6 C 0.06 1.11 2.38 45.06 0.11 1.22 16 7 H 0.05 1.11 5.79 -2.39 -0.01 1.09 16 8 C -0.13 -2.09 9.32 71.98 0.67 -1.42 16 9 N -0.48 -8.81 4.87 -837.98 -4.08 -12.89 16 10 C 0.03 0.42 4.22 85.55 0.36 0.78 16 11 C 0.48 10.44 6.59 87.66 0.58 11.02 16 12 O -0.57 -15.67 11.20 -3.02 -0.03 -15.71 16 13 N -0.60 -12.36 2.97 -818.17 -2.43 -14.79 16 14 C 0.11 1.96 6.08 86.50 0.53 2.49 16 15 C -0.16 -3.53 4.89 30.82 0.15 -3.38 16 16 C 0.14 3.62 0.71 -10.76 -0.01 3.61 16 17 O -0.56 -14.92 11.70 -148.98 -1.74 -16.66 16 18 C 0.13 4.69 5.43 86.38 0.47 5.16 16 19 N -0.75 -31.96 4.87 -343.46 -1.67 -33.63 16 20 C -0.24 -13.25 10.47 84.03 0.88 -12.37 16 21 H 0.05 3.04 8.06 -2.91 -0.02 3.02 16 22 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 23 N -0.99 -62.01 13.97 21.65 0.30 -61.71 16 24 Si 0.96 41.99 27.74 68.60 1.90 43.90 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 27 H -0.24 -8.73 6.52 99.48 0.65 -8.08 16 28 C -0.11 -2.63 5.11 30.66 0.16 -2.47 16 29 C 0.12 2.80 6.19 86.35 0.53 3.33 16 30 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.05 0.73 7.74 -2.39 -0.02 0.72 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.17 8.06 -2.39 -0.02 1.15 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.20 7.69 -2.39 -0.02 1.19 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.12 1.56 7.18 -2.38 -0.02 1.54 16 41 H 0.12 1.67 7.97 -2.39 -0.02 1.65 16 42 H 0.08 1.39 7.81 -2.39 -0.02 1.37 16 43 H 0.11 1.32 5.95 -2.39 -0.01 1.31 16 44 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.08 1.89 6.53 -2.38 -0.02 1.88 16 46 H 0.38 9.55 8.19 -74.06 -0.61 8.94 16 47 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 49 H 0.37 14.12 3.41 -92.70 -0.32 13.80 16 50 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 51 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 52 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 53 H 0.08 1.97 7.01 -2.39 -0.02 1.95 16 54 H 0.07 1.69 7.81 -2.39 -0.02 1.67 16 Total: -1.00 -69.37 400.22 -1.74 -71.11 By element: Atomic # 1 Polarization: 39.75 SS G_CDS: -0.09 Total: 39.66 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 6.10 Total: 0.72 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -7.88 Total: -123.02 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -1.78 Total: -32.37 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.90 Total: 43.90 kcal Total: -69.37 -1.74 -71.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484965058.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.423 kcal (2) G-P(sol) polarization free energy of solvation -69.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds