Wall clock time and date at job start Sat Apr 11 2020 05:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.50734 * 2 1 4 4 C 1.53100 * 109.54571 * 120.10889 * 2 1 3 5 5 O 1.43010 * 109.26105 * 176.80138 * 4 2 1 6 6 C 1.43011 * 113.74237 * 301.33284 * 5 4 2 7 7 C 1.53098 * 109.25787 * 58.66625 * 6 5 4 8 8 N 1.47008 * 109.26013 * 303.15394 * 7 6 5 9 9 C 1.46904 * 111.00352 * 182.39121 * 8 7 6 10 10 C 1.53001 * 109.46931 * 66.04564 * 9 8 7 11 11 N 1.46499 * 109.46992 * 180.02562 * 10 9 8 12 12 C 1.34776 * 119.99837 * 180.02562 * 11 10 9 13 13 O 1.21580 * 120.00451 * 355.00934 * 12 11 10 14 14 N 1.34777 * 119.99568 * 175.01559 * 12 11 10 15 15 C 1.46930 * 120.63037 * 184.94273 * 14 12 11 16 16 C 1.52754 * 109.01316 * 233.58769 * 15 14 12 17 17 C 1.53048 * 109.38096 * 305.58443 * 16 15 14 18 18 C 1.52999 * 109.44928 * 181.25416 * 17 16 15 19 19 C 1.50690 * 109.46947 * 64.93950 * 18 17 16 20 20 H 1.07999 * 120.00792 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99735 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00161 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99967 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47501 * 89.99681 * 23 21 19 25 25 H 1.48506 * 109.47003 * 210.00012 * 23 21 19 26 26 H 1.48497 * 109.47211 * 329.99476 * 23 21 19 27 27 C 1.53043 * 109.53566 * 61.23751 * 17 16 15 28 28 C 1.46922 * 120.63468 * 5.22555 * 14 12 11 29 29 H 1.09004 * 109.47145 * 180.09168 * 1 2 3 30 30 H 1.09004 * 109.46983 * 300.08269 * 1 2 3 31 31 H 1.08994 * 109.47431 * 60.08171 * 1 2 3 32 32 H 1.08999 * 109.50847 * 296.74517 * 4 2 1 33 33 H 1.09006 * 109.50244 * 56.87053 * 4 2 1 34 34 H 1.09001 * 109.50993 * 298.73687 * 6 5 4 35 35 H 1.08999 * 109.51067 * 178.60658 * 6 5 4 36 36 H 1.08997 * 109.50682 * 183.21562 * 7 6 5 37 37 H 1.09002 * 109.50538 * 63.09403 * 7 6 5 38 38 H 1.08994 * 109.47124 * 186.04703 * 9 8 7 39 39 H 1.08999 * 109.46722 * 306.04616 * 9 8 7 40 40 H 1.09000 * 109.47100 * 300.00357 * 10 9 8 41 41 H 1.09000 * 109.47253 * 59.99912 * 10 9 8 42 42 H 0.97000 * 120.00386 * 359.97438 * 11 10 9 43 43 H 1.09008 * 109.58210 * 353.42367 * 15 14 12 44 44 H 1.09003 * 109.58905 * 113.83753 * 15 14 12 45 45 H 1.08999 * 109.56580 * 185.55292 * 16 15 14 46 46 H 1.09001 * 109.36319 * 65.49135 * 16 15 14 47 47 H 1.09002 * 109.45984 * 301.22437 * 17 16 15 48 48 H 1.08997 * 109.46807 * 184.94122 * 18 17 16 49 49 H 1.09006 * 109.46925 * 304.93636 * 18 17 16 50 50 H 0.97000 * 119.99955 * 179.97438 * 22 21 19 51 51 H 1.09002 * 109.49627 * 178.68343 * 27 17 16 52 52 H 1.09000 * 109.49661 * 58.59035 * 27 17 16 53 53 H 1.09001 * 109.58327 * 246.15492 * 28 14 12 54 54 H 1.08999 * 109.59049 * 6.43568 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0422 -0.7238 1.2481 5 8 3.4703 -0.7857 1.2048 6 6 3.9827 -1.4563 0.0503 7 6 3.4902 -0.7400 -1.2099 8 7 2.0209 -0.6947 -1.1991 9 6 1.5045 -0.0641 -2.4212 10 6 1.8325 -0.9459 -3.6278 11 7 1.3181 -0.3167 -4.8467 12 6 1.4913 -0.9183 -6.0402 13 8 2.1521 -1.9359 -6.1179 14 7 0.9321 -0.3917 -7.1477 15 6 1.0205 -1.0920 -8.4363 16 6 1.5983 -0.1397 -9.4816 17 6 0.7624 1.1418 -9.5184 18 6 1.3210 2.0839 -10.5867 19 6 1.1527 1.4572 -11.9467 20 1 0.6930 0.4844 -12.0400 21 6 1.5858 2.1257 -13.0722 22 7 2.1452 3.3105 -12.9588 23 14 1.3766 1.3492 -14.7582 24 1 0.0651 1.7494 -15.3282 25 1 2.4673 1.8102 -15.6543 26 1 1.4311 -0.1295 -14.6324 27 6 0.8192 1.8292 -8.1522 28 6 0.2278 0.8964 -7.0906 29 1 -0.3634 -1.0277 0.0016 30 1 -0.3633 0.5151 0.8893 31 1 -0.3634 0.5125 -0.8906 32 1 1.7282 -0.1797 2.1389 33 1 1.6347 -1.7344 1.2756 34 1 3.6317 -2.4882 0.0429 35 1 5.0724 -1.4421 0.0748 36 1 3.8312 -1.2808 -2.0927 37 1 3.8856 0.2756 -1.2293 38 1 0.4239 0.0539 -2.3405 39 1 1.9682 0.9140 -2.5492 40 1 2.9131 -1.0639 -3.7085 41 1 1.3688 -1.9240 -3.4998 42 1 0.8521 0.5324 -4.7947 43 1 1.6712 -1.9608 -8.3361 44 1 0.0260 -1.4119 -8.7474 45 1 1.5765 -0.6165 -10.4615 46 1 2.6274 0.1047 -9.2182 47 1 -0.2718 0.8941 -9.7575 48 1 0.7821 3.0308 -10.5537 49 1 2.3796 2.2616 -10.3968 50 1 2.4502 3.7807 -13.7505 51 1 0.2428 2.7538 -8.1859 52 1 1.8556 2.0550 -7.9013 53 1 -0.8327 0.7421 -7.2898 54 1 0.3534 1.3382 -6.1021 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577103721.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:37 Heat of formation + Delta-G solvation = -97.337571 kcal Electronic energy + Delta-G solvation = -30064.492534 eV Core-core repulsion = 26035.028064 eV Total energy + Delta-G solvation = -4029.464470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50724 -40.77820 -38.93787 -37.50636 -35.81048 -35.59712 -34.00111 -33.55200 -32.06891 -30.81947 -29.66830 -28.25181 -27.10655 -26.19815 -24.16788 -23.73505 -23.60711 -22.92974 -21.51680 -21.07156 -20.42618 -19.10074 -18.38828 -17.76684 -17.35757 -17.07336 -16.84378 -16.55024 -16.42186 -16.08728 -15.80415 -15.39091 -15.30220 -15.22215 -14.95042 -14.71998 -14.60391 -14.36894 -14.27411 -13.86461 -13.76064 -13.37004 -13.15435 -13.03191 -12.93744 -12.81639 -12.72891 -12.51333 -12.46912 -12.32623 -12.14079 -12.10249 -11.81469 -11.77407 -11.50994 -11.35748 -11.28304 -11.02701 -10.81008 -10.61325 -10.51324 -10.23736 -9.47251 -9.44451 -8.16715 -6.25453 1.40645 1.41513 1.52060 1.57582 2.10610 2.42473 2.58816 2.91552 3.07117 3.16997 3.68521 3.79494 3.89011 3.92652 4.00211 4.04392 4.08661 4.14913 4.21455 4.23459 4.28210 4.38689 4.44131 4.47462 4.53146 4.66092 4.68018 4.70422 4.77780 4.80984 4.84400 4.86459 4.90493 4.90887 4.94928 4.99905 5.06719 5.10979 5.30599 5.31561 5.34151 5.39374 5.44942 5.55167 5.61267 5.82057 5.88614 5.90492 5.91807 5.98413 6.16113 6.30533 6.91284 6.94436 7.42979 7.52557 8.94932 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027838 B = 0.001753 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.567995 B =15965.130383 C =16114.013021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 H 0.045 0.955 4 C 0.065 3.935 5 O -0.406 6.406 6 C 0.063 3.937 7 C 0.013 3.987 8 N -0.535 5.535 9 C 0.050 3.950 10 C 0.148 3.852 11 N -0.734 5.734 12 C 0.704 3.296 13 O -0.637 6.637 14 N -0.624 5.624 15 C 0.136 3.864 16 C -0.111 4.111 17 C -0.073 4.073 18 C 0.033 3.967 19 C -0.528 4.528 20 H 0.063 0.937 21 C -0.003 4.003 22 N -0.935 5.935 23 Si 0.958 3.042 24 H -0.272 1.272 25 H -0.287 1.287 26 H -0.264 1.264 27 C -0.125 4.125 28 C 0.119 3.881 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.105 0.895 39 H 0.046 0.954 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.409 0.591 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.036 0.964 47 H 0.066 0.934 48 H -0.007 1.007 49 H -0.018 1.018 50 H 0.261 0.739 51 H 0.082 0.918 52 H 0.047 0.953 53 H 0.089 0.911 54 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.257 -6.209 29.883 30.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.063 4.063 3 H 0.063 0.937 4 C -0.012 4.012 5 O -0.325 6.325 6 C -0.014 4.014 7 C -0.115 4.115 8 N -0.261 5.261 9 C -0.078 4.078 10 C 0.023 3.977 11 N -0.393 5.393 12 C 0.405 3.595 13 O -0.519 6.519 14 N -0.361 5.361 15 C 0.013 3.987 16 C -0.149 4.149 17 C -0.092 4.092 18 C -0.005 4.005 19 C -0.566 4.566 20 H 0.082 0.918 21 C -0.200 4.200 22 N -0.576 5.576 23 Si 0.783 3.217 24 H -0.198 1.198 25 H -0.213 1.213 26 H -0.188 1.188 27 C -0.163 4.163 28 C -0.003 4.003 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.131 0.869 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.123 0.877 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.248 0.752 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.055 0.945 47 H 0.084 0.916 48 H 0.011 0.989 49 H 0.000 1.000 50 H 0.069 0.931 51 H 0.101 0.899 52 H 0.066 0.934 53 H 0.107 0.893 54 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.787 -7.221 29.928 31.157 hybrid contribution 0.471 1.153 -1.729 2.131 sum -4.316 -6.068 28.199 29.165 Atomic orbital electron populations 1.21847 0.91888 1.03169 1.03239 1.22365 0.97544 0.96012 0.90352 0.93652 1.22877 0.80033 1.00803 0.97443 1.87964 1.21884 1.78733 1.43874 1.22750 0.99816 0.95534 0.83282 1.22891 0.87950 1.00427 1.00272 1.62115 1.08487 1.53648 1.01898 1.22249 1.02437 0.95151 0.87975 1.21018 0.98447 0.96476 0.81770 1.44999 1.63099 1.26482 1.04697 1.15957 0.79526 0.82816 0.81210 1.90865 1.46411 1.28531 1.86055 1.47371 1.57805 1.23366 1.07512 1.21365 1.01635 0.94627 0.81045 1.21693 0.98320 0.96400 0.98513 1.21037 0.98971 0.94865 0.94291 1.19022 0.93993 0.94107 0.93331 1.21687 1.38321 1.03899 0.92664 0.91845 1.25941 0.95191 0.95451 1.03466 1.70098 1.42227 1.14909 1.30402 0.85545 0.77745 0.79081 0.79284 1.19800 1.21325 1.18790 1.21940 1.00942 0.98887 0.94526 1.21806 0.96853 0.81847 0.99807 0.91663 0.90269 0.91495 0.86855 0.92033 0.92028 0.87191 0.89232 0.94205 0.87730 0.93547 0.93133 0.91996 0.75224 0.90698 0.90134 0.91381 0.94533 0.91582 0.98894 0.99969 0.93068 0.89916 0.93445 0.89263 0.88050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 8.92 71.98 0.64 -0.44 16 2 C 0.05 0.51 2.59 44.92 0.12 0.63 16 3 H 0.05 0.57 8.14 -2.38 -0.02 0.56 16 4 C 0.07 0.76 6.29 72.02 0.45 1.21 16 5 O -0.41 -6.68 10.83 -148.98 -1.61 -8.29 16 6 C 0.06 0.86 7.01 72.01 0.50 1.37 16 7 C 0.01 0.18 5.43 86.32 0.47 0.65 16 8 N -0.54 -7.32 4.54 -870.01 -3.95 -11.27 16 9 C 0.05 0.63 4.85 86.30 0.42 1.05 16 10 C 0.15 2.74 5.61 86.38 0.48 3.22 16 11 N -0.73 -14.80 5.47 -478.54 -2.62 -17.41 16 12 C 0.70 20.62 8.30 179.05 1.49 22.10 16 13 O -0.64 -24.19 15.77 -3.97 -0.06 -24.25 16 14 N -0.62 -17.20 2.98 -837.76 -2.50 -19.69 16 15 C 0.14 4.21 6.41 86.22 0.55 4.76 16 16 C -0.11 -4.09 5.17 30.53 0.16 -3.93 16 17 C -0.07 -2.76 2.10 -10.76 -0.02 -2.78 16 18 C 0.03 1.65 4.45 29.84 0.13 1.78 16 19 C -0.53 -29.06 8.39 25.60 0.21 -28.84 16 20 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 21 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 22 N -0.94 -56.76 13.29 21.45 0.28 -56.47 16 23 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 27 C -0.12 -3.64 5.36 30.67 0.16 -3.48 16 28 C 0.12 2.54 6.39 86.36 0.55 3.10 16 29 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.07 0.46 6.17 -2.39 -0.01 0.45 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.09 1.34 6.37 -2.39 -0.02 1.33 16 37 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.10 1.01 5.77 -2.39 -0.01 1.00 16 39 H 0.05 0.57 8.12 -2.39 -0.02 0.55 16 40 H 0.05 1.10 6.51 -2.39 -0.02 1.09 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.41 5.73 5.96 -92.71 -0.55 5.18 16 43 H 0.07 2.51 6.99 -2.38 -0.02 2.50 16 44 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.07 2.71 6.91 -2.39 -0.02 2.69 16 46 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 48 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 49 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 50 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 51 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 52 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 53 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 54 H 0.10 1.46 5.64 -2.39 -0.01 1.45 16 Total: -1.00 -73.48 408.68 -1.31 -74.79 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.32 Total: 15.78 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 6.79 Total: 0.67 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -8.77 Total: -104.84 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.68 Total: -32.54 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -73.48 -1.31 -74.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577103721.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.547 kcal (2) G-P(sol) polarization free energy of solvation -73.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds