Wall clock time and date at job start Sat Apr 11 2020 05:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.52179 * 2 1 4 4 C 1.53187 * 109.49851 * 239.92209 * 2 1 3 5 5 N 1.46924 * 108.77551 * 185.41099 * 4 2 1 6 6 C 1.36937 * 120.63232 * 233.62603 * 5 4 2 7 7 H 1.08000 * 119.99827 * 27.66322 * 6 5 4 8 8 C 1.38812 * 120.00305 * 207.66017 * 6 5 4 9 9 N 1.31620 * 119.99803 * 17.37065 * 8 6 5 10 10 Si 1.86800 * 120.00199 * 197.37486 * 8 6 5 11 11 H 1.48509 * 109.46898 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47253 * 119.99791 * 10 8 6 13 13 H 1.48493 * 109.47199 * 239.99865 * 10 8 6 14 14 C 1.46930 * 118.73850 * 53.60473 * 5 4 2 15 15 C 1.53188 * 108.77723 * 306.39377 * 14 5 4 16 16 C 1.53038 * 109.49738 * 120.07644 * 2 1 3 17 17 H 1.09003 * 109.44649 * 61.30809 * 16 2 1 18 18 N 1.46493 * 109.46641 * 301.34114 * 16 2 1 19 19 C 1.34777 * 120.00545 * 154.92828 * 18 16 2 20 20 O 1.21278 * 119.99521 * 0.02562 * 19 18 16 21 21 C 1.50697 * 120.00364 * 179.72478 * 19 18 16 22 22 C 1.52999 * 109.46981 * 85.27659 * 21 19 18 23 23 C 1.53000 * 109.47203 * 205.27900 * 21 19 18 24 24 N 1.46905 * 109.46776 * 325.27792 * 21 19 18 25 25 C 1.47006 * 111.00294 * 303.63486 * 24 21 19 26 26 C 1.53101 * 109.25940 * 177.61155 * 25 24 21 27 27 O 1.43014 * 109.25855 * 56.84509 * 26 25 24 28 28 C 1.43020 * 113.73947 * 301.32960 * 27 26 25 29 29 C 1.47019 * 110.99301 * 179.97438 * 24 21 19 30 30 H 1.09000 * 109.47619 * 299.91404 * 1 2 3 31 31 H 1.08995 * 109.47252 * 59.92254 * 1 2 3 32 32 H 1.09006 * 109.46871 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.59256 * 65.62224 * 4 2 1 34 34 H 1.08999 * 109.70403 * 305.26600 * 4 2 1 35 35 H 0.97003 * 119.99529 * 179.97438 * 9 8 6 36 36 H 1.09004 * 109.58669 * 186.60364 * 14 5 4 37 37 H 1.08996 * 109.70154 * 66.25360 * 14 5 4 38 38 H 1.09003 * 109.49662 * 294.68637 * 15 14 5 39 39 H 1.09000 * 109.50022 * 174.58669 * 15 14 5 40 40 H 0.97005 * 119.99425 * 334.93426 * 18 16 2 41 41 H 1.09003 * 109.47165 * 60.00303 * 22 21 19 42 42 H 1.08999 * 109.47127 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.47022 * 300.00310 * 22 21 19 44 44 H 1.09004 * 109.46854 * 60.00081 * 23 21 19 45 45 H 1.08999 * 109.47000 * 180.02562 * 23 21 19 46 46 H 1.09000 * 109.46757 * 300.00171 * 23 21 19 47 47 H 1.09006 * 109.50537 * 297.53905 * 25 24 21 48 48 H 1.08997 * 109.50801 * 57.67348 * 25 24 21 49 49 H 1.09001 * 109.50251 * 296.90996 * 26 25 24 50 50 H 1.08993 * 109.50865 * 176.78264 * 26 25 24 51 51 H 1.08992 * 109.51017 * 298.73546 * 28 27 26 52 52 H 1.08996 * 109.53989 * 178.62500 * 28 27 26 53 53 H 1.08992 * 109.50895 * 302.32482 * 29 24 21 54 54 H 1.08996 * 109.50683 * 62.42382 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7237 -1.2496 5 7 3.5046 -0.8290 -1.1696 6 6 4.2936 -0.3783 -2.1941 7 1 3.9465 0.4216 -2.8313 8 6 5.5395 -0.9497 -2.4136 9 7 5.8287 -2.1205 -1.8865 10 14 6.8057 -0.0568 -3.4571 11 1 6.2378 1.2314 -3.9300 12 1 8.0205 0.2059 -2.6445 13 1 7.1651 -0.8979 -4.6269 14 6 4.1053 -1.4265 0.0308 15 6 3.5709 -0.6949 1.2660 16 6 2.0408 -0.7230 1.2484 17 1 1.6967 -1.7572 1.2351 18 7 1.5265 -0.0530 2.4453 19 6 1.3971 -0.7386 3.5984 20 8 1.7069 -1.9102 3.6452 21 6 0.8740 -0.0477 4.8313 22 6 -0.6557 -0.0754 4.8210 23 6 1.3888 -0.7699 6.0779 24 7 1.3384 1.3459 4.8459 25 6 2.8049 1.4134 4.7690 26 6 3.2415 2.8802 4.7268 27 8 2.7278 3.5585 5.8763 28 6 1.3022 3.5133 5.9822 29 6 0.8456 2.0529 6.0370 30 1 -0.3634 0.5125 0.8907 31 1 -0.3633 0.5150 -0.8892 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7638 -0.1579 -2.1389 34 1 1.6055 -1.7215 -1.3006 35 1 6.6992 -2.5199 -2.0402 36 1 5.1897 -1.3244 -0.0137 37 1 3.8399 -2.4821 0.0880 38 1 3.9158 0.3391 1.2541 39 1 3.9335 -1.1895 2.1671 40 1 1.2790 0.8842 2.4078 41 1 -1.0004 -1.1094 4.8101 42 1 -1.0342 0.4247 5.7125 43 1 -1.0225 0.4392 3.9328 44 1 2.4786 -0.7501 6.0852 45 1 1.0100 -0.2704 6.9696 46 1 1.0442 -1.8040 6.0670 47 1 3.2379 0.9299 5.6447 48 1 3.1458 0.9061 3.8665 49 1 2.8528 3.3498 3.8231 50 1 4.3300 2.9362 4.7274 51 1 0.8571 4.0012 5.1152 52 1 0.9877 4.0272 6.8905 53 1 -0.2433 2.0124 6.0597 54 1 1.2464 1.5794 6.9331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000943516624.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:09 Heat of formation + Delta-G solvation = -73.953004 kcal Electronic energy + Delta-G solvation = -32631.254935 eV Core-core repulsion = 28602.804495 eV Total energy + Delta-G solvation = -4028.450439 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.93823 -40.31759 -39.25595 -37.43408 -36.21043 -34.15181 -33.05854 -32.88770 -32.19524 -31.48312 -28.40905 -27.66845 -27.41880 -26.98237 -25.28553 -24.21385 -23.11239 -22.62574 -21.60474 -21.08890 -19.98107 -18.77994 -18.52839 -17.39945 -17.16191 -16.83315 -16.74912 -16.17702 -15.96158 -15.79040 -15.64648 -15.56334 -15.44081 -15.12511 -15.02923 -14.67818 -14.56621 -14.27150 -13.75288 -13.56885 -13.53781 -13.17697 -13.08890 -13.02048 -12.99882 -12.82384 -12.73634 -12.61765 -12.45946 -12.32363 -12.28276 -12.07451 -12.02973 -12.01930 -11.66048 -11.56432 -11.42913 -11.27499 -10.77230 -10.60528 -10.58104 -9.92691 -9.50188 -8.72477 -7.88270 -5.34236 1.46394 1.48238 1.57735 1.59002 2.18350 2.50863 2.57292 2.97221 3.27503 3.50658 3.63810 3.75929 3.83444 3.91906 3.97634 4.01216 4.06318 4.13121 4.17334 4.27869 4.35589 4.37426 4.53249 4.59090 4.62704 4.63656 4.69508 4.71944 4.74010 4.77136 4.82826 4.85746 4.87588 4.89586 4.93453 5.00582 5.03264 5.10876 5.14632 5.15719 5.24197 5.30448 5.37972 5.51213 5.57536 5.62986 5.68387 5.73319 5.85469 6.20986 6.37025 6.64252 7.12171 7.29946 7.83089 8.35959 9.18828 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014258 B = 0.003286 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.348423 B = 8517.809661 C = 9260.494212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 H 0.078 0.922 4 C 0.150 3.850 5 N -0.608 5.608 6 C -0.260 4.260 7 H 0.074 0.926 8 C -0.053 4.053 9 N -0.938 5.938 10 Si 0.968 3.032 11 H -0.262 1.262 12 H -0.292 1.292 13 H -0.294 1.294 14 C 0.184 3.816 15 C -0.128 4.128 16 C 0.168 3.832 17 H 0.052 0.948 18 N -0.695 5.695 19 C 0.522 3.478 20 O -0.586 6.586 21 C 0.098 3.902 22 C -0.133 4.133 23 C -0.164 4.164 24 N -0.517 5.517 25 C 0.007 3.993 26 C 0.070 3.930 27 O -0.404 6.404 28 C 0.060 3.940 29 C 0.013 3.987 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.008 0.992 35 H 0.249 0.751 36 H 0.055 0.945 37 H -0.014 1.014 38 H 0.062 0.938 39 H 0.042 0.958 40 H 0.416 0.584 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.042 0.958 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.039 0.961 48 H 0.074 0.926 49 H 0.067 0.933 50 H 0.100 0.900 51 H 0.066 0.934 52 H 0.117 0.883 53 H 0.116 0.884 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.401 12.671 17.760 26.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.119 4.119 3 H 0.097 0.903 4 C 0.024 3.976 5 N -0.331 5.331 6 C -0.390 4.390 7 H 0.091 0.909 8 C -0.248 4.248 9 N -0.584 5.584 10 Si 0.796 3.204 11 H -0.186 1.186 12 H -0.219 1.219 13 H -0.221 1.221 14 C 0.058 3.942 15 C -0.168 4.168 16 C 0.063 3.937 17 H 0.071 0.929 18 N -0.345 5.345 19 C 0.308 3.692 20 O -0.466 6.466 21 C 0.005 3.995 22 C -0.191 4.191 23 C -0.223 4.223 24 N -0.243 5.243 25 C -0.121 4.121 26 C -0.007 4.007 27 O -0.322 6.322 28 C -0.017 4.017 29 C -0.115 4.115 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.026 0.974 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.004 0.996 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.253 0.747 41 H 0.080 0.920 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.057 0.943 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.118 0.882 51 H 0.085 0.915 52 H 0.135 0.865 53 H 0.134 0.866 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.138 12.105 17.447 26.079 hybrid contribution 1.504 -0.786 -0.273 1.719 sum -13.634 11.319 17.175 24.677 Atomic orbital electron populations 1.21699 0.92712 1.01758 1.02853 1.21734 0.96885 0.99752 0.93494 0.90326 1.21077 0.83482 0.96671 0.96377 1.44336 1.01114 1.71347 1.16309 1.19599 0.98639 1.12103 1.08706 0.90869 1.25840 1.01897 0.96009 1.01034 1.70223 1.21928 1.16308 1.49991 0.85202 0.78976 0.78514 0.77730 1.18563 1.21877 1.22120 1.20439 0.97626 0.91935 0.84238 1.22287 0.96105 1.00694 0.97735 1.20654 0.92444 0.96085 0.84502 0.92931 1.46041 1.64426 1.15039 1.09021 1.20862 0.76623 0.86360 0.85338 1.90711 1.51685 1.18586 1.85602 1.21263 0.98600 0.88041 0.91609 1.21863 0.89236 1.03082 1.04873 1.22240 1.00876 1.01697 0.97496 1.62499 1.09397 1.11524 1.40897 1.22908 0.88582 0.98989 1.01623 1.22618 0.99632 0.89452 0.88950 1.87975 1.22603 1.75707 1.45961 1.22873 0.80114 0.94920 1.03743 1.23029 1.02789 0.94954 0.90686 0.91007 0.91157 0.93622 0.91695 0.97423 0.94218 0.92641 0.99617 0.91947 0.93929 0.74651 0.92011 0.88589 0.90468 0.93868 0.89192 0.91891 0.94295 0.90731 0.91495 0.88172 0.91533 0.86471 0.86605 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.03 71.98 0.65 -2.48 16 2 C -0.10 -3.07 2.46 -10.72 -0.03 -3.09 16 3 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 4 C 0.15 6.10 5.80 86.36 0.50 6.60 16 5 N -0.61 -30.76 2.99 -699.12 -2.09 -32.86 16 6 C -0.26 -14.27 9.58 84.03 0.81 -13.46 16 7 H 0.07 3.84 7.89 -2.91 -0.02 3.82 16 8 C -0.05 -2.97 4.91 84.86 0.42 -2.55 16 9 N -0.94 -56.92 11.19 21.65 0.24 -56.68 16 10 Si 0.97 45.00 29.59 68.60 2.03 47.03 16 11 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 12 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 13 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 14 C 0.18 9.39 5.31 86.36 0.46 9.85 16 15 C -0.13 -5.18 5.65 30.67 0.17 -5.00 16 16 C 0.17 5.75 1.88 45.02 0.08 5.83 16 17 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 18 N -0.69 -18.41 3.24 -442.42 -1.43 -19.84 16 19 C 0.52 14.78 5.39 87.66 0.47 15.25 16 20 O -0.59 -22.39 15.76 -3.02 -0.05 -22.44 16 21 C 0.10 1.90 0.64 2.78 0.00 1.90 16 22 C -0.13 -1.86 8.23 71.98 0.59 -1.27 16 23 C -0.16 -3.31 7.31 71.98 0.53 -2.79 16 24 N -0.52 -8.48 3.82 -849.93 -3.25 -11.73 16 25 C 0.01 0.15 4.86 86.32 0.42 0.57 16 26 C 0.07 1.29 7.01 72.02 0.50 1.79 16 27 O -0.40 -7.55 10.83 -148.98 -1.61 -9.16 16 28 C 0.06 0.72 7.01 72.02 0.50 1.22 16 29 C 0.01 0.15 4.87 86.32 0.42 0.57 16 30 H 0.07 1.38 7.36 -2.39 -0.02 1.36 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.06 2.52 7.93 -2.39 -0.02 2.50 16 34 H 0.01 0.33 8.14 -2.39 -0.02 0.32 16 35 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.06 3.18 6.03 -2.38 -0.01 3.17 16 37 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 38 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.42 9.02 7.62 -92.70 -0.71 8.31 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.10 0.82 6.35 -2.39 -0.02 0.81 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.04 1.02 6.54 -2.39 -0.02 1.01 16 45 H 0.09 1.31 6.46 -2.39 -0.02 1.30 16 46 H 0.06 1.44 7.87 -2.39 -0.02 1.42 16 47 H 0.04 0.87 6.52 -2.38 -0.02 0.85 16 48 H 0.07 1.84 6.20 -2.39 -0.01 1.83 16 49 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 52 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 53 H 0.12 0.81 6.18 -2.39 -0.01 0.80 16 54 H 0.05 0.61 6.44 -2.39 -0.02 0.59 16 Total: -1.00 -71.06 399.79 0.52 -70.54 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.17 Total: 22.19 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 6.50 Total: 12.94 kcal Atomic # 7 Polarization: -114.58 SS G_CDS: -6.53 Total: -121.11 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.66 Total: -31.60 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -71.06 0.52 -70.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943516624.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.408 kcal (2) G-P(sol) polarization free energy of solvation -71.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds