Wall clock time and date at job start Sat Apr 11 2020 05:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.44825 * 2 1 4 4 C 1.53032 * 109.46042 * 119.97225 * 2 1 3 5 5 C 1.53199 * 109.31200 * 181.38710 * 4 2 1 6 6 N 1.46917 * 108.77385 * 305.36293 * 5 4 2 7 7 C 1.36946 * 120.62917 * 233.58528 * 6 5 4 8 8 H 1.07995 * 119.99737 * 27.69379 * 7 6 5 9 9 C 1.38806 * 119.99857 * 207.69254 * 7 6 5 10 10 N 1.31625 * 120.00335 * 17.37188 * 9 7 6 11 11 Si 1.86800 * 120.00018 * 197.36629 * 9 7 6 12 12 H 1.48500 * 109.46906 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.47115 * 120.00275 * 11 9 7 14 14 H 1.48495 * 109.47587 * 240.00253 * 11 9 7 15 15 C 1.46929 * 118.74051 * 53.61151 * 6 5 4 16 16 C 1.53038 * 109.46060 * 240.04110 * 2 1 3 17 17 H 1.09000 * 109.52471 * 298.57769 * 16 2 1 18 18 N 1.46500 * 109.50189 * 58.66107 * 16 2 1 19 19 C 1.34778 * 120.00152 * 204.56623 * 18 16 2 20 20 O 1.21280 * 120.00252 * 0.26773 * 19 18 16 21 21 C 1.50701 * 119.99965 * 180.27786 * 19 18 16 22 22 C 1.53002 * 109.47531 * 84.99306 * 21 19 18 23 23 C 1.52998 * 109.46907 * 205.00077 * 21 19 18 24 24 N 1.46906 * 109.47035 * 324.99383 * 21 19 18 25 25 C 1.47017 * 110.99881 * 303.64225 * 24 21 19 26 26 C 1.53101 * 109.25420 * 177.60455 * 25 24 21 27 27 O 1.43018 * 109.25721 * 56.85037 * 26 25 24 28 28 C 1.43022 * 113.73576 * 301.32109 * 27 26 25 29 29 C 1.47013 * 111.00103 * 180.02562 * 24 21 19 30 30 H 1.09004 * 109.46759 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47230 * 299.96415 * 1 2 3 32 32 H 1.09004 * 109.47252 * 59.96503 * 1 2 3 33 33 H 1.08995 * 109.50141 * 61.43188 * 4 2 1 34 34 H 1.09007 * 109.52410 * 301.34947 * 4 2 1 35 35 H 1.08998 * 109.58207 * 185.57463 * 5 4 2 36 36 H 1.09007 * 109.58676 * 65.15262 * 5 4 2 37 37 H 0.97000 * 119.99825 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.58303 * 186.60204 * 15 6 5 39 39 H 1.08991 * 109.70530 * 66.24786 * 15 6 5 40 40 H 0.96997 * 119.99571 * 24.83719 * 18 16 2 41 41 H 1.09004 * 109.46580 * 60.00087 * 22 21 19 42 42 H 1.08998 * 109.46750 * 179.97438 * 22 21 19 43 43 H 1.08997 * 109.47151 * 300.00627 * 22 21 19 44 44 H 1.08989 * 109.47757 * 59.99582 * 23 21 19 45 45 H 1.09000 * 109.46857 * 179.97438 * 23 21 19 46 46 H 1.08996 * 109.46978 * 299.99094 * 23 21 19 47 47 H 1.08999 * 109.50333 * 297.53481 * 25 24 21 48 48 H 1.08996 * 109.51005 * 57.66764 * 25 24 21 49 49 H 1.08990 * 109.50739 * 296.91061 * 26 25 24 50 50 H 1.09007 * 109.50536 * 176.77826 * 26 25 24 51 51 H 1.08995 * 109.50651 * 298.74072 * 28 27 26 52 52 H 1.09003 * 109.50228 * 178.60878 * 28 27 26 53 53 H 1.08995 * 109.50661 * 302.32503 * 29 24 21 54 54 H 1.08998 * 109.50568 * 62.41313 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7208 1.2499 5 6 3.5714 -0.6886 1.2641 6 7 4.0678 -1.2487 -0.0001 7 6 4.9765 -2.2733 -0.0002 8 1 5.0097 -2.9656 0.8280 9 6 5.8548 -2.4219 -1.0648 10 7 6.0606 -1.4199 -1.8930 11 14 6.7447 -4.0440 -1.3219 12 1 6.3423 -5.0029 -0.2617 13 1 6.3877 -4.5991 -2.6522 14 1 8.2112 -3.8200 -1.2565 15 6 3.5714 -0.6883 -1.2644 16 6 2.0398 -0.7206 -1.2501 17 1 1.6979 -1.7555 -1.2391 18 7 1.5256 -0.0485 -2.4460 19 6 1.4054 -0.7296 -3.6027 20 8 1.7184 -1.9003 -3.6525 21 6 0.8823 -0.0365 -4.8344 22 6 2.0333 0.6784 -5.5451 23 6 0.2640 -1.0705 -5.7776 24 7 -0.1394 0.9455 -4.4471 25 6 -1.2218 0.3066 -3.6845 26 6 -2.2313 1.3729 -3.2509 27 8 -2.7164 2.0611 -4.4069 28 6 -1.6886 2.6956 -5.1727 29 6 -0.6741 1.6424 -5.6259 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3634 0.5144 -0.8897 33 1 1.6978 -1.7557 1.2381 34 1 1.6572 -0.2213 2.1401 35 1 3.9416 -1.2846 2.0982 36 1 3.9143 0.3410 1.3673 37 1 6.6747 -1.5237 -2.6367 38 1 3.9417 -1.2843 -2.0986 39 1 3.9142 0.3408 -1.3699 40 1 1.2753 0.8878 -2.4062 41 1 2.7913 -0.0503 -5.8325 42 1 1.6549 1.1792 -6.4362 43 1 2.4737 1.4149 -4.8731 44 1 -0.5559 -1.5797 -5.2714 45 1 -0.1148 -0.5691 -6.6682 46 1 1.0220 -1.7991 -6.0651 47 1 -1.7204 -0.4333 -4.3105 48 1 -0.8069 -0.1817 -2.8028 49 1 -1.7457 2.0830 -2.5816 50 1 -3.0648 0.8965 -2.7345 51 1 -1.1873 3.4442 -4.5593 52 1 -2.1296 3.1758 -6.0463 53 1 0.1408 2.1293 -6.1616 54 1 -1.1632 0.9233 -6.2830 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968414672.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:44 Heat of formation + Delta-G solvation = -74.515941 kcal Electronic energy + Delta-G solvation = -33078.932511 eV Core-core repulsion = 29050.457661 eV Total energy + Delta-G solvation = -4028.474850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.91662 -40.26725 -39.23726 -37.40588 -36.10995 -34.63941 -33.02833 -32.79801 -32.16841 -30.51260 -28.99731 -28.42239 -27.55644 -26.05936 -25.31229 -24.30241 -23.05220 -22.58070 -21.59499 -21.05824 -20.03406 -18.84081 -18.51651 -17.40194 -17.10833 -16.86264 -16.72157 -16.12420 -15.96966 -15.76197 -15.62896 -15.47365 -15.26800 -15.21394 -15.03355 -14.85181 -14.48346 -14.09998 -13.78443 -13.61603 -13.51433 -13.26376 -13.17428 -13.05565 -13.00682 -12.84333 -12.77800 -12.58074 -12.48942 -12.36240 -12.26756 -12.14896 -12.02996 -11.90772 -11.63244 -11.43513 -11.39168 -11.19530 -10.74264 -10.58011 -10.55706 -10.00177 -9.48544 -8.70367 -7.90844 -5.36162 1.38063 1.42609 1.51093 1.61517 2.21298 2.47549 2.56998 3.00261 3.25138 3.49670 3.75191 3.82741 3.83524 3.94892 3.96519 4.02970 4.04903 4.14946 4.19009 4.31210 4.36097 4.47913 4.52038 4.57989 4.59474 4.62168 4.67699 4.68394 4.73611 4.75498 4.82094 4.88112 4.90360 4.93695 4.98869 5.03467 5.11402 5.14104 5.18608 5.20872 5.23250 5.30195 5.46987 5.49763 5.53678 5.60575 5.71737 5.81036 5.87964 6.23246 6.34997 6.67859 7.10541 7.35915 7.83943 8.32784 9.13915 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.003887 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.854876 B = 7201.499341 C = 8508.353608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.084 4.084 3 H 0.076 0.924 4 C -0.115 4.115 5 C 0.136 3.864 6 N -0.609 5.609 7 C -0.264 4.264 8 H 0.067 0.933 9 C -0.048 4.048 10 N -0.929 5.929 11 Si 0.959 3.041 12 H -0.264 1.264 13 H -0.299 1.299 14 H -0.285 1.285 15 C 0.181 3.819 16 C 0.140 3.860 17 H 0.045 0.955 18 N -0.692 5.692 19 C 0.519 3.481 20 O -0.589 6.589 21 C 0.101 3.899 22 C -0.134 4.134 23 C -0.161 4.161 24 N -0.517 5.517 25 C 0.004 3.996 26 C 0.072 3.928 27 O -0.402 6.402 28 C 0.064 3.936 29 C 0.010 3.990 30 H 0.042 0.958 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.021 0.979 37 H 0.247 0.753 38 H 0.042 0.958 39 H -0.003 1.003 40 H 0.414 0.586 41 H 0.048 0.952 42 H 0.101 0.899 43 H 0.067 0.933 44 H 0.050 0.950 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.039 0.961 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.109 0.891 51 H 0.066 0.934 52 H 0.117 0.883 53 H 0.108 0.892 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.095 11.662 -5.199 22.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 H 0.095 0.905 4 C -0.155 4.155 5 C 0.011 3.989 6 N -0.333 5.333 7 C -0.395 4.395 8 H 0.085 0.915 9 C -0.244 4.244 10 N -0.575 5.575 11 Si 0.787 3.213 12 H -0.188 1.188 13 H -0.226 1.226 14 H -0.211 1.211 15 C 0.054 3.946 16 C 0.033 3.967 17 H 0.064 0.936 18 N -0.343 5.343 19 C 0.305 3.695 20 O -0.468 6.468 21 C 0.008 3.992 22 C -0.191 4.191 23 C -0.220 4.220 24 N -0.244 5.244 25 C -0.124 4.124 26 C -0.005 4.005 27 O -0.321 6.321 28 C -0.013 4.013 29 C -0.117 4.117 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.015 0.985 40 H 0.251 0.749 41 H 0.067 0.933 42 H 0.119 0.881 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.098 0.902 49 H 0.088 0.912 50 H 0.127 0.873 51 H 0.084 0.916 52 H 0.135 0.865 53 H 0.126 0.874 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.728 11.197 -5.046 22.396 hybrid contribution 1.115 -1.559 -0.792 2.074 sum -17.613 9.638 -5.838 20.910 Atomic orbital electron populations 1.21799 0.92870 1.01610 1.02910 1.21243 0.97080 0.99182 0.92803 0.90539 1.21963 0.95624 1.00176 0.97693 1.21174 0.93680 0.96098 0.87970 1.44253 1.48140 1.39838 1.01091 1.19526 1.09713 1.03988 1.06230 0.91512 1.25743 0.98570 1.00207 0.99875 1.70178 1.38423 1.30682 1.18212 0.85330 0.77999 0.80562 0.77383 1.18799 1.22613 1.21119 1.20758 0.89888 0.94765 0.89152 1.21476 0.94733 0.95636 0.84807 0.93628 1.45899 1.64205 1.15116 1.09078 1.20887 0.77179 0.86200 0.85250 1.90726 1.52130 1.18828 1.85126 1.21184 0.94295 0.92170 0.91572 1.21836 0.95651 1.00292 1.01364 1.22201 1.01008 0.98994 0.99761 1.62490 1.11979 1.26699 1.23231 1.23014 0.92981 0.97501 0.98908 1.22679 0.96871 0.93324 0.87651 1.87969 1.34101 1.70336 1.39677 1.22826 0.88273 0.93655 0.96519 1.23038 0.99436 0.97458 0.91761 0.93852 0.90282 0.91690 0.93243 0.88557 0.92718 0.96127 0.94420 0.93964 0.98526 0.74855 0.93300 0.88067 0.91357 0.93053 0.89006 0.92741 0.94253 0.90151 0.91213 0.87327 0.91559 0.86487 0.87390 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.02 71.98 0.65 -2.30 16 2 C -0.08 -2.50 2.27 -10.77 -0.02 -2.53 16 3 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 4 C -0.12 -3.65 5.36 30.67 0.16 -3.48 16 5 C 0.14 5.58 6.52 86.37 0.56 6.14 16 6 N -0.61 -31.93 2.99 -699.10 -2.09 -34.03 16 7 C -0.26 -15.39 9.59 84.03 0.81 -14.58 16 8 H 0.07 3.78 7.89 -2.91 -0.02 3.75 16 9 C -0.05 -2.87 4.91 84.86 0.42 -2.46 16 10 N -0.93 -58.21 11.19 21.65 0.24 -57.96 16 11 Si 0.96 48.18 29.59 68.60 2.03 50.21 16 12 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 13 H -0.30 -15.41 7.11 99.48 0.71 -14.70 16 14 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 15 C 0.18 9.25 4.88 86.36 0.42 9.67 16 16 C 0.14 5.50 2.06 45.07 0.09 5.59 16 17 H 0.05 2.12 7.59 -2.39 -0.02 2.10 16 18 N -0.69 -22.65 3.26 -442.16 -1.44 -24.09 16 19 C 0.52 18.53 5.37 87.66 0.47 19.00 16 20 O -0.59 -27.76 15.76 -3.03 -0.05 -27.81 16 21 C 0.10 2.57 0.64 2.78 0.00 2.57 16 22 C -0.13 -3.14 8.23 71.98 0.59 -2.55 16 23 C -0.16 -3.99 7.31 71.98 0.53 -3.46 16 24 N -0.52 -10.00 3.83 -849.91 -3.25 -13.25 16 25 C 0.00 0.08 4.86 86.31 0.42 0.50 16 26 C 0.07 1.13 7.01 72.02 0.50 1.63 16 27 O -0.40 -7.07 10.83 -148.98 -1.61 -8.68 16 28 C 0.06 0.82 7.01 72.02 0.50 1.32 16 29 C 0.01 0.15 4.87 86.32 0.42 0.57 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 1.25 6.16 -2.38 -0.01 1.24 16 33 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.10 2.32 8.14 -2.38 -0.02 2.30 16 35 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 36 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.04 2.59 6.04 -2.39 -0.01 2.58 16 39 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.41 11.12 7.62 -92.71 -0.71 10.41 16 41 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.10 1.63 6.36 -2.39 -0.02 1.61 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 44 H 0.05 1.34 6.54 -2.39 -0.02 1.33 16 45 H 0.09 1.70 6.46 -2.39 -0.02 1.68 16 46 H 0.05 1.60 7.87 -2.39 -0.02 1.58 16 47 H 0.04 0.85 6.52 -2.39 -0.02 0.84 16 48 H 0.08 1.83 5.02 -2.39 -0.01 1.82 16 49 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 51 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 53 H 0.11 1.22 6.19 -2.39 -0.01 1.20 16 54 H 0.05 0.73 6.44 -2.39 -0.02 0.72 16 Total: -1.00 -76.63 397.43 0.53 -76.10 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.18 Total: 23.88 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: 6.53 Total: 15.64 kcal Atomic # 7 Polarization: -122.79 SS G_CDS: -6.55 Total: -129.34 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -1.66 Total: -36.49 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -76.63 0.53 -76.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968414672.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.584 kcal (2) G-P(sol) polarization free energy of solvation -76.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds