Wall clock time and date at job start Sat Apr 11 2020 05:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46640 * 2 1 4 4 C 1.53045 * 109.46118 * 240.02460 * 2 1 3 5 5 C 1.53198 * 109.31130 * 178.62928 * 4 2 1 6 6 N 1.46919 * 108.77283 * 54.63852 * 5 4 2 7 7 C 1.36941 * 120.63055 * 126.41417 * 6 5 4 8 8 H 1.08004 * 119.99984 * 332.57499 * 7 6 5 9 9 C 1.38812 * 120.00274 * 152.57788 * 7 6 5 10 10 N 1.31625 * 120.00060 * 159.34942 * 9 7 6 11 11 Si 1.86800 * 119.99995 * 339.35613 * 9 7 6 12 12 H 1.48494 * 109.47321 * 92.90325 * 11 9 7 13 13 H 1.48501 * 109.47194 * 212.90904 * 11 9 7 14 14 H 1.48509 * 109.46983 * 332.90128 * 11 9 7 15 15 C 1.46923 * 118.74191 * 306.38521 * 6 5 4 16 16 C 1.53079 * 109.43966 * 119.82307 * 2 1 3 17 17 H 1.08994 * 109.38911 * 61.36007 * 16 2 1 18 18 N 1.46497 * 109.62164 * 301.24829 * 16 2 1 19 19 C 1.34785 * 119.99800 * 155.10623 * 18 16 2 20 20 O 1.21275 * 119.99727 * 0.02562 * 19 18 16 21 21 C 1.50695 * 119.99784 * 180.02562 * 19 18 16 22 22 C 1.53001 * 109.47369 * 85.00014 * 21 19 18 23 23 C 1.53005 * 109.46765 * 205.00040 * 21 19 18 24 24 N 1.46898 * 109.47222 * 324.99847 * 21 19 18 25 25 C 1.47011 * 110.99951 * 303.63498 * 24 21 19 26 26 C 1.53099 * 109.25705 * 177.60550 * 25 24 21 27 27 O 1.43023 * 109.25862 * 56.85055 * 26 25 24 28 28 C 1.43013 * 113.73893 * 301.33331 * 27 26 25 29 29 C 1.47018 * 110.99951 * 180.02562 * 24 21 19 30 30 H 1.08998 * 109.46972 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46730 * 299.97749 * 1 2 3 32 32 H 1.09002 * 109.46829 * 59.96988 * 1 2 3 33 33 H 1.08997 * 109.49178 * 58.67809 * 4 2 1 34 34 H 1.08997 * 109.49538 * 298.58055 * 4 2 1 35 35 H 1.08994 * 109.58527 * 294.85067 * 5 4 2 36 36 H 1.09000 * 109.70113 * 174.49211 * 5 4 2 37 37 H 0.97000 * 119.99900 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.59029 * 173.40151 * 15 6 5 39 39 H 1.08997 * 109.58950 * 293.68156 * 15 6 5 40 40 H 0.96990 * 120.00490 * 335.11226 * 18 16 2 41 41 H 1.09005 * 109.46952 * 60.00039 * 22 21 19 42 42 H 1.08996 * 109.47297 * 179.97438 * 22 21 19 43 43 H 1.08998 * 109.47188 * 299.99993 * 22 21 19 44 44 H 1.08995 * 109.47283 * 60.00168 * 23 21 19 45 45 H 1.09004 * 109.46820 * 180.02562 * 23 21 19 46 46 H 1.08998 * 109.46868 * 299.99488 * 23 21 19 47 47 H 1.08996 * 109.51004 * 297.54329 * 25 24 21 48 48 H 1.09000 * 109.50403 * 57.67993 * 25 24 21 49 49 H 1.09003 * 109.50755 * 296.91797 * 26 25 24 50 50 H 1.09004 * 109.50947 * 176.78567 * 26 25 24 51 51 H 1.09000 * 109.50262 * 298.73355 * 28 27 26 52 52 H 1.08995 * 109.54277 * 178.62389 * 28 27 26 53 53 H 1.08996 * 109.50767 * 302.32814 * 29 24 21 54 54 H 1.09000 * 109.50710 * 62.41449 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2500 5 6 3.5715 -0.6891 -1.2639 6 7 4.0676 -1.2494 0.0004 7 6 4.9759 -2.2742 0.0006 8 1 5.0121 -2.9639 -0.8297 9 6 5.8503 -2.4265 1.0679 10 7 6.4268 -3.5895 1.2856 11 14 6.2085 -0.9809 2.1954 12 1 5.2796 -1.0142 3.3534 13 1 7.6091 -1.0675 2.6816 14 1 6.0219 0.2884 1.4474 15 6 3.5711 -0.6890 1.2645 16 6 2.0394 -0.7179 1.2523 17 1 1.6952 -1.7520 1.2419 18 7 1.5282 -0.0436 2.4482 19 6 1.4027 -0.7250 3.6043 20 8 1.7135 -1.8962 3.6546 21 6 0.8762 -0.0316 4.8343 22 6 -0.6534 -0.0612 4.8212 23 6 1.3896 -0.7500 6.0838 24 7 1.3388 1.3626 4.8462 25 6 2.8055 1.4317 4.7721 26 6 3.2402 2.8990 4.7268 27 8 2.7234 3.5797 5.8736 28 6 1.2978 3.5328 5.9770 29 6 0.8438 2.0718 6.0351 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 1.6574 -0.2209 -2.1397 34 1 1.6976 -1.7557 -1.2382 35 1 3.9145 0.3403 -1.3670 36 1 3.9438 -1.2837 -2.0981 37 1 7.0381 -3.6958 2.0312 38 1 3.9412 -1.2849 2.0988 39 1 3.9163 0.3396 1.3689 40 1 1.2798 0.8931 2.4080 41 1 -0.9967 -1.0958 4.8124 42 1 -1.0342 0.4399 5.7110 43 1 -1.0192 0.4505 3.9310 44 1 2.4793 -0.7288 6.0932 45 1 1.0084 -0.2486 6.9735 46 1 1.0463 -1.7844 6.0750 47 1 3.2374 0.9510 5.6498 48 1 3.1487 0.9226 3.8715 49 1 2.8526 3.3657 3.8212 50 1 4.3287 2.9564 4.7294 51 1 0.8537 4.0179 5.1077 52 1 0.9808 4.0487 6.8833 53 1 -0.2451 2.0299 6.0567 54 1 1.2441 1.6008 6.9329 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968414675.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:57 Heat of formation + Delta-G solvation = -72.137835 kcal Electronic energy + Delta-G solvation = -33420.282174 eV Core-core repulsion = 29391.910446 eV Total energy + Delta-G solvation = -4028.371728 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.01291 -40.42262 -39.40543 -37.49347 -36.23379 -34.72241 -33.35917 -33.07976 -32.21924 -30.84817 -29.20440 -28.43131 -27.62439 -25.89630 -25.54080 -24.47537 -23.41968 -22.58135 -21.71792 -21.19574 -20.09056 -18.90658 -18.68066 -17.65221 -17.23184 -16.98257 -16.88424 -16.27817 -16.06604 -15.95755 -15.77737 -15.62594 -15.30465 -15.18895 -15.16519 -15.10607 -14.60407 -14.45139 -13.91617 -13.79551 -13.59589 -13.50839 -13.32909 -13.23753 -13.10576 -12.90524 -12.86769 -12.61889 -12.49961 -12.39426 -12.34859 -12.25117 -12.10507 -11.76360 -11.70159 -11.48313 -11.47005 -11.28247 -10.84895 -10.81533 -10.66617 -10.10996 -9.59408 -8.96453 -8.24977 -5.55144 1.19425 1.25280 1.35715 1.51262 2.08884 2.33633 2.50138 2.91543 2.99083 3.31690 3.49927 3.69171 3.77098 3.84465 3.91099 3.94534 3.96291 4.03578 4.05921 4.20646 4.28908 4.31274 4.36687 4.46737 4.54137 4.55067 4.57749 4.64437 4.67303 4.71299 4.75499 4.79999 4.82977 4.86132 4.86700 4.93611 4.98598 5.01450 5.08472 5.09903 5.16929 5.18587 5.20658 5.41874 5.44019 5.57165 5.63329 5.79051 5.81380 6.05782 6.16181 6.57434 6.85375 7.26545 7.56484 7.95720 8.94893 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011074 B = 0.004850 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.841864 B = 5771.809354 C = 6598.539304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 H 0.090 0.910 4 C -0.118 4.118 5 C 0.137 3.863 6 N -0.617 5.617 7 C -0.247 4.247 8 H 0.056 0.944 9 C -0.035 4.035 10 N -0.955 5.955 11 Si 0.945 3.055 12 H -0.298 1.298 13 H -0.308 1.308 14 H -0.248 1.248 15 C 0.124 3.876 16 C 0.143 3.857 17 H 0.049 0.951 18 N -0.695 5.695 19 C 0.516 3.484 20 O -0.588 6.588 21 C 0.096 3.904 22 C -0.129 4.129 23 C -0.166 4.166 24 N -0.509 5.509 25 C 0.003 3.997 26 C 0.073 3.927 27 O -0.402 6.402 28 C 0.061 3.939 29 C 0.010 3.990 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.057 0.943 37 H 0.259 0.741 38 H 0.031 0.969 39 H 0.035 0.965 40 H 0.419 0.581 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.082 0.918 44 H 0.032 0.968 45 H 0.095 0.905 46 H 0.061 0.939 47 H 0.031 0.969 48 H 0.064 0.936 49 H 0.077 0.923 50 H 0.096 0.904 51 H 0.073 0.927 52 H 0.120 0.880 53 H 0.122 0.878 54 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.400 19.591 6.975 28.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.108 0.892 4 C -0.158 4.158 5 C 0.013 3.987 6 N -0.341 5.341 7 C -0.377 4.377 8 H 0.074 0.926 9 C -0.229 4.229 10 N -0.601 5.601 11 Si 0.775 3.225 12 H -0.226 1.226 13 H -0.237 1.237 14 H -0.172 1.172 15 C -0.003 4.003 16 C 0.036 3.964 17 H 0.068 0.932 18 N -0.347 5.347 19 C 0.302 3.698 20 O -0.467 6.467 21 C 0.004 3.996 22 C -0.186 4.186 23 C -0.225 4.225 24 N -0.236 5.236 25 C -0.126 4.126 26 C -0.004 4.004 27 O -0.321 6.321 28 C -0.016 4.016 29 C -0.117 4.117 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.257 0.743 41 H 0.078 0.922 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.051 0.949 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.050 0.950 48 H 0.083 0.917 49 H 0.095 0.905 50 H 0.114 0.886 51 H 0.091 0.909 52 H 0.138 0.862 53 H 0.140 0.860 54 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.155 19.027 6.747 27.829 hybrid contribution 1.390 -0.913 1.216 2.060 sum -17.765 18.114 7.963 26.592 Atomic orbital electron populations 1.21755 0.92773 1.01567 1.03071 1.21288 0.97240 0.99646 0.92068 0.89176 1.21989 0.95472 1.00260 0.98046 1.21260 0.93661 0.97052 0.86723 1.44425 1.48136 1.40022 1.01567 1.18902 1.09545 1.03225 1.06017 0.92603 1.25891 0.98147 0.98691 1.00205 1.69970 1.34300 1.23932 1.31893 0.85920 0.75044 0.82678 0.78858 1.22592 1.23731 1.17211 1.21589 0.94072 0.96095 0.88523 1.21365 0.93048 0.96515 0.85489 0.93231 1.45919 1.64700 1.15184 1.08935 1.21009 0.76684 0.86432 0.85653 1.90763 1.51259 1.19088 1.85562 1.21300 0.99079 0.88069 0.91192 1.21844 0.88432 1.03135 1.05210 1.22261 1.00371 1.01870 0.97997 1.62550 1.08672 1.11207 1.41145 1.22933 0.89173 0.99475 1.01035 1.22596 0.99479 0.88839 0.89522 1.87979 1.22827 1.75278 1.46040 1.22908 0.79915 0.94659 1.04093 1.23086 1.03038 0.95083 0.90464 0.94177 0.91579 0.90148 0.87879 0.93628 0.93735 0.92442 0.93186 0.95073 0.94749 0.74280 0.92178 0.88251 0.89916 0.94882 0.88602 0.92030 0.95030 0.91729 0.90518 0.88600 0.90924 0.86240 0.86041 0.93759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.03 71.98 0.65 -2.00 16 2 C -0.08 -2.18 2.27 -10.75 -0.02 -2.20 16 3 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 4 C -0.12 -3.40 5.37 30.68 0.16 -3.24 16 5 C 0.14 5.09 6.52 86.37 0.56 5.65 16 6 N -0.62 -30.06 2.77 -699.11 -1.94 -32.00 16 7 C -0.25 -14.81 10.03 84.03 0.84 -13.97 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 9 C -0.03 -2.17 5.23 84.86 0.44 -1.72 16 10 N -0.95 -64.16 13.97 21.65 0.30 -63.86 16 11 Si 0.95 50.59 24.34 68.60 1.67 52.26 16 12 H -0.30 -16.21 6.62 99.48 0.66 -15.55 16 13 H -0.31 -16.56 7.11 99.48 0.71 -15.85 16 14 H -0.25 -12.16 6.64 99.48 0.66 -11.50 16 15 C 0.12 5.58 3.78 86.36 0.33 5.91 16 16 C 0.14 5.12 2.06 45.08 0.09 5.21 16 17 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 18 N -0.70 -20.45 3.27 -442.11 -1.44 -21.90 16 19 C 0.52 17.27 5.38 87.65 0.47 17.75 16 20 O -0.59 -26.95 15.76 -3.01 -0.05 -27.00 16 21 C 0.10 2.25 0.64 2.78 0.00 2.25 16 22 C -0.13 -2.04 8.23 71.98 0.59 -1.45 16 23 C -0.17 -4.24 7.31 71.98 0.53 -3.71 16 24 N -0.51 -9.81 3.83 -849.94 -3.25 -13.07 16 25 C 0.00 0.07 4.86 86.32 0.42 0.48 16 26 C 0.07 1.52 7.01 72.02 0.50 2.03 16 27 O -0.40 -8.20 10.83 -148.98 -1.61 -9.81 16 28 C 0.06 0.78 7.01 72.02 0.50 1.28 16 29 C 0.01 0.14 4.87 86.31 0.42 0.56 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.12 7.36 -2.39 -0.02 1.11 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 37 H 0.26 16.67 8.31 -92.71 -0.77 15.90 16 38 H 0.03 1.70 4.50 -2.39 -0.01 1.69 16 39 H 0.03 1.47 7.06 -2.39 -0.02 1.45 16 40 H 0.42 9.40 7.64 -92.72 -0.71 8.69 16 41 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 42 H 0.10 0.97 6.36 -2.39 -0.02 0.95 16 43 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.03 1.02 6.54 -2.39 -0.02 1.00 16 45 H 0.10 1.77 6.46 -2.38 -0.02 1.76 16 46 H 0.06 1.75 7.87 -2.39 -0.02 1.73 16 47 H 0.03 0.91 6.52 -2.39 -0.02 0.90 16 48 H 0.06 2.02 6.22 -2.39 -0.01 2.00 16 49 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 51 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 53 H 0.12 0.95 6.19 -2.39 -0.01 0.93 16 54 H 0.04 0.68 6.44 -2.39 -0.02 0.67 16 Total: -1.00 -82.52 393.44 0.26 -82.26 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.08 Total: 20.28 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 6.50 Total: 12.84 kcal Atomic # 7 Polarization: -124.50 SS G_CDS: -6.33 Total: -130.83 kcal Atomic # 8 Polarization: -35.15 SS G_CDS: -1.66 Total: -36.81 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 1.67 Total: 52.26 kcal Total: -82.52 0.26 -82.26 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968414675.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.117 kcal (2) G-P(sol) polarization free energy of solvation -82.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds