Wall clock time and date at job start Sat Apr 11 2020 05:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47368 * 2 1 4 4 N 1.46505 * 109.47168 * 119.99790 * 2 1 3 5 5 C 1.34786 * 119.99566 * 275.00263 * 4 2 1 6 6 O 1.21281 * 119.99858 * 359.97438 * 5 4 2 7 7 C 1.50693 * 119.99760 * 179.97438 * 5 4 2 8 8 H 1.09004 * 109.51294 * 304.91598 * 7 5 4 9 9 C 1.53101 * 109.50770 * 65.00013 * 7 5 4 10 10 N 1.47019 * 109.26015 * 176.78358 * 9 7 5 11 11 C 1.46896 * 110.99806 * 177.60804 * 10 9 7 12 12 C 1.47016 * 110.74978 * 301.38227 * 10 9 7 13 13 C 1.53105 * 109.25700 * 58.61568 * 12 10 9 14 14 H 1.09000 * 109.50143 * 63.13213 * 13 12 10 15 15 C 1.53003 * 109.50532 * 183.21310 * 13 12 10 16 16 O 1.43005 * 109.25927 * 303.15176 * 13 12 10 17 17 C 1.52999 * 109.47376 * 239.99265 * 2 1 3 18 18 C 1.53039 * 109.45904 * 180.02562 * 17 2 1 19 19 C 1.53193 * 109.31102 * 178.60191 * 18 17 2 20 20 N 1.46928 * 108.76421 * 54.66054 * 19 18 17 21 21 C 1.36935 * 120.63097 * 126.40686 * 20 19 18 22 22 H 1.08001 * 120.00317 * 332.60218 * 21 20 19 23 23 C 1.38819 * 120.00085 * 152.60533 * 21 20 19 24 24 N 1.31614 * 120.00110 * 159.35894 * 23 21 20 25 25 Si 1.86803 * 119.99730 * 339.36064 * 23 21 20 26 26 H 1.48493 * 109.47240 * 92.91130 * 25 23 21 27 27 H 1.48500 * 109.47097 * 212.91192 * 25 23 21 28 28 H 1.48505 * 109.47070 * 332.90594 * 25 23 21 29 29 C 1.46921 * 118.73469 * 306.38076 * 20 19 18 30 30 C 1.53040 * 109.45894 * 59.97490 * 17 2 1 31 31 H 1.08991 * 109.47204 * 300.00142 * 1 2 3 32 32 H 1.08995 * 109.46657 * 60.00820 * 1 2 3 33 33 H 1.09000 * 109.46771 * 180.02562 * 1 2 3 34 34 H 0.96993 * 120.00555 * 94.99687 * 4 2 1 35 35 H 1.09000 * 109.50401 * 296.71560 * 9 7 5 36 36 H 1.09002 * 109.50468 * 56.80484 * 9 7 5 37 37 H 1.09002 * 109.47442 * 56.04770 * 11 10 9 38 38 H 1.09004 * 109.46903 * 176.04534 * 11 10 9 39 39 H 1.08995 * 109.47318 * 296.04183 * 11 10 9 40 40 H 1.08998 * 109.50617 * 178.54965 * 12 10 9 41 41 H 1.09000 * 109.50757 * 298.64070 * 12 10 9 42 42 H 1.08997 * 109.46609 * 60.00128 * 15 13 12 43 43 H 1.08994 * 109.46904 * 179.97438 * 15 13 12 44 44 H 1.09005 * 109.47002 * 300.00282 * 15 13 12 45 45 H 1.08996 * 109.46515 * 300.00013 * 17 2 1 46 46 H 1.09001 * 109.50366 * 298.56468 * 18 17 2 47 47 H 1.09000 * 109.49860 * 58.66557 * 18 17 2 48 48 H 1.08999 * 109.60425 * 294.86735 * 19 18 17 49 49 H 1.09009 * 109.70532 * 174.50540 * 19 18 17 50 50 H 0.97002 * 120.00036 * 180.02562 * 24 23 21 51 51 H 1.09001 * 109.58784 * 293.82121 * 29 20 19 52 52 H 1.09006 * 109.58596 * 173.40230 * 29 20 19 53 53 H 1.08999 * 109.49544 * 301.33888 * 30 17 2 54 54 H 1.09004 * 109.49533 * 61.43160 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8589 1.1588 2.4114 7 6 2.6488 -0.7285 3.5878 8 1 2.0268 -1.6022 3.7829 9 6 4.0976 -1.1714 3.3674 10 7 4.6066 -1.7950 4.5977 11 6 5.9783 -2.2861 4.4103 12 6 4.5328 -0.8560 5.7265 13 6 3.0795 -0.4162 5.9233 14 1 2.4704 -1.2806 6.1878 15 6 3.0074 0.6220 7.0448 16 8 2.5921 0.1588 4.7081 17 6 2.0401 -0.7214 -1.2491 18 6 3.5704 -0.7218 -1.2485 19 6 4.0774 -1.4751 -2.4823 20 7 3.4749 -0.8772 -3.6816 21 6 4.2609 -0.4519 -4.7192 22 1 5.2762 -0.1344 -4.5326 23 6 3.7527 -0.4288 -6.0108 24 7 4.3160 0.3309 -6.9261 25 14 2.2694 -1.4760 -6.4497 26 1 1.0305 -0.6752 -6.2800 27 1 2.3799 -1.9240 -7.8612 28 1 2.2188 -2.6615 -5.5567 29 6 2.0131 -0.7450 -3.7468 30 6 1.5293 -0.0003 -2.4986 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 2.2490 -1.6317 1.1528 35 1 4.1376 -1.8922 2.5507 36 1 4.7093 -0.3044 3.1180 37 1 6.6154 -1.4668 4.0773 38 1 6.3556 -2.6791 5.3544 39 1 5.9818 -3.0770 3.6603 40 1 4.8904 -1.3465 6.6319 41 1 5.1522 0.0158 5.5159 42 1 3.6155 1.4866 6.7790 43 1 1.9727 0.9350 7.1841 44 1 3.3827 0.1843 7.9699 45 1 1.6767 -1.7490 -1.2489 46 1 3.9346 0.3053 -1.2740 47 1 3.9338 -1.2147 -0.3468 48 1 3.7906 -2.5244 -2.4136 49 1 5.1631 -1.3962 -2.5408 50 1 3.9606 0.3473 -7.8285 51 1 1.5579 -1.7348 -3.7811 52 1 1.7365 -0.1822 -4.6384 53 1 0.4396 0.0204 -2.4868 54 1 1.9128 1.0200 -2.5122 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997169949.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:23 Heat of formation + Delta-G solvation = -79.924736 kcal Electronic energy + Delta-G solvation = -31335.928796 eV Core-core repulsion = 27307.219403 eV Total energy + Delta-G solvation = -4028.709393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.59707 -40.38265 -39.37591 -37.03050 -36.65622 -34.64833 -34.05217 -33.02924 -31.96162 -31.06311 -29.87641 -28.01776 -27.17817 -26.25143 -24.39207 -24.19431 -23.48218 -22.25994 -21.63351 -21.45493 -20.81078 -18.84886 -18.30807 -17.96971 -17.23793 -17.11912 -16.85922 -16.53852 -16.16464 -15.91340 -15.63800 -15.44691 -15.30085 -15.18855 -14.85645 -14.62422 -14.44683 -14.29538 -13.96869 -13.71404 -13.66458 -13.56493 -13.43810 -13.28696 -13.08702 -12.85718 -12.75948 -12.69561 -12.56990 -12.42343 -12.21444 -12.18811 -12.00940 -11.75775 -11.63515 -11.51439 -11.28261 -11.17888 -10.82403 -10.70537 -10.62706 -10.11285 -9.54273 -8.90275 -8.15504 -5.46718 1.31647 1.42411 1.48400 1.52182 1.75014 2.43294 2.67752 2.93691 3.07239 3.38722 3.58736 3.65233 3.72212 3.78649 3.89402 3.94610 3.97090 4.07563 4.20929 4.32598 4.35937 4.38989 4.46590 4.50426 4.51713 4.55550 4.57773 4.59897 4.67741 4.70944 4.71689 4.82381 4.83789 4.87187 4.99502 5.01211 5.02152 5.03126 5.09226 5.11726 5.20579 5.24162 5.29194 5.37860 5.45633 5.62259 5.76283 5.86046 5.88406 6.05966 6.13596 6.53325 6.94861 7.19774 7.65579 8.05072 9.04709 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019909 B = 0.002525 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.026315 B =11086.013564 C =11942.715714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.156 3.844 3 H 0.058 0.942 4 N -0.701 5.701 5 C 0.520 3.480 6 O -0.570 6.570 7 C 0.084 3.916 8 H 0.115 0.885 9 C 0.032 3.968 10 N -0.541 5.541 11 C 0.022 3.978 12 C 0.021 3.979 13 C 0.082 3.918 14 H 0.080 0.920 15 C -0.142 4.142 16 O -0.387 6.387 17 C -0.074 4.074 18 C -0.117 4.117 19 C 0.144 3.856 20 N -0.622 5.622 21 C -0.248 4.248 22 H 0.045 0.955 23 C -0.041 4.041 24 N -0.961 5.961 25 Si 0.952 3.048 26 H -0.274 1.274 27 H -0.314 1.314 28 H -0.254 1.254 29 C 0.120 3.880 30 C -0.121 4.121 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.417 0.583 35 H 0.115 0.885 36 H 0.028 0.972 37 H 0.022 0.978 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.112 0.888 41 H 0.031 0.969 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.036 0.964 47 H 0.088 0.912 48 H 0.045 0.955 49 H 0.048 0.952 50 H 0.261 0.739 51 H 0.041 0.959 52 H 0.045 0.955 53 H 0.088 0.912 54 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 -9.410 29.615 31.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.051 3.949 3 H 0.076 0.924 4 N -0.355 5.355 5 C 0.306 3.694 6 O -0.448 6.448 7 C 0.023 3.977 8 H 0.132 0.868 9 C -0.097 4.097 10 N -0.265 5.265 11 C -0.126 4.126 12 C -0.108 4.108 13 C 0.025 3.975 14 H 0.098 0.902 15 C -0.199 4.199 16 O -0.307 6.307 17 C -0.093 4.093 18 C -0.156 4.156 19 C 0.019 3.981 20 N -0.347 5.347 21 C -0.378 4.378 22 H 0.063 0.937 23 C -0.235 4.235 24 N -0.608 5.608 25 Si 0.781 3.219 26 H -0.201 1.201 27 H -0.243 1.243 28 H -0.179 1.179 29 C -0.005 4.005 30 C -0.161 4.161 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.254 0.746 35 H 0.133 0.867 36 H 0.047 0.953 37 H 0.041 0.959 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.130 0.870 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.120 0.880 45 H 0.115 0.885 46 H 0.054 0.946 47 H 0.106 0.894 48 H 0.063 0.937 49 H 0.066 0.934 50 H 0.069 0.931 51 H 0.059 0.941 52 H 0.063 0.937 53 H 0.107 0.893 54 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.098 -8.755 29.626 31.310 hybrid contribution 0.570 0.382 -1.301 1.470 sum -4.529 -8.373 28.325 29.882 Atomic orbital electron populations 1.22167 0.94140 1.03285 1.02079 1.20871 0.94644 0.96130 0.83237 0.92371 1.45830 1.66609 1.14704 1.08319 1.20486 0.77316 0.86759 0.84855 1.90714 1.50928 1.17904 1.85249 1.21937 0.97420 0.92836 0.85536 0.86766 1.22675 0.93569 0.98867 0.94587 1.62293 1.23744 1.36638 1.03824 1.22485 0.86478 0.99776 1.03819 1.22942 0.97048 0.94922 0.95839 1.22476 0.93549 0.97215 0.84293 0.90194 1.21768 1.03077 0.98311 0.96742 1.88099 1.84921 1.40086 1.17545 1.21228 0.95388 1.00453 0.92205 1.21922 0.95346 1.00085 0.98242 1.21115 0.96540 0.95150 0.85285 1.44505 1.01827 1.71271 1.17109 1.18852 0.96915 1.35529 0.86493 0.93679 1.25979 1.01807 1.00145 0.95616 1.69988 1.45661 1.40824 1.04294 0.85822 0.79731 0.80693 0.75655 1.20095 1.24332 1.17853 1.21419 0.83761 0.97900 0.97430 1.21991 1.00949 0.98866 0.94255 0.93715 0.90799 0.90325 0.74571 0.86733 0.95327 0.95927 0.89514 0.89831 0.87010 0.95047 0.92902 0.91838 0.88004 0.88468 0.94554 0.89388 0.93733 0.93369 0.93063 0.94068 0.93725 0.89322 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 9.13 71.98 0.66 -2.65 16 2 C 0.16 3.64 2.16 44.99 0.10 3.73 16 3 H 0.06 1.76 7.58 -2.39 -0.02 1.74 16 4 N -0.70 -13.31 4.33 -442.52 -1.91 -15.23 16 5 C 0.52 12.76 7.15 87.65 0.63 13.39 16 6 O -0.57 -20.09 16.17 15.93 0.26 -19.83 16 7 C 0.08 1.60 3.22 29.88 0.10 1.70 16 8 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 9 C 0.03 0.51 4.90 86.31 0.42 0.94 16 10 N -0.54 -7.47 4.99 -921.40 -4.59 -12.06 16 11 C 0.02 0.24 9.63 127.69 1.23 1.46 16 12 C 0.02 0.28 4.94 86.32 0.43 0.70 16 13 C 0.08 1.27 3.43 30.63 0.10 1.37 16 14 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 15 C -0.14 -1.77 9.57 71.98 0.69 -1.08 16 16 O -0.39 -9.16 9.65 -130.02 -1.25 -10.41 16 17 C -0.07 -1.82 1.79 -10.77 -0.02 -1.84 16 18 C -0.12 -3.29 5.22 30.67 0.16 -3.13 16 19 C 0.14 5.12 6.52 86.36 0.56 5.68 16 20 N -0.62 -28.47 2.77 -699.08 -1.94 -30.40 16 21 C -0.25 -14.15 10.03 84.04 0.84 -13.31 16 22 H 0.05 2.85 8.06 -2.91 -0.02 2.82 16 23 C -0.04 -2.43 5.23 84.86 0.44 -1.98 16 24 N -0.96 -61.30 13.97 21.65 0.30 -61.00 16 25 Si 0.95 46.23 24.34 68.60 1.67 47.90 16 26 H -0.27 -12.55 6.62 99.48 0.66 -11.89 16 27 H -0.31 -15.63 7.11 99.48 0.71 -14.93 16 28 H -0.25 -11.51 6.64 99.48 0.66 -10.85 16 29 C 0.12 4.80 4.20 86.36 0.36 5.16 16 30 C -0.12 -3.79 5.04 30.67 0.15 -3.63 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.51 6.40 -2.39 -0.02 1.50 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.42 5.04 8.25 -92.71 -0.77 4.27 16 35 H 0.11 1.32 8.01 -2.39 -0.02 1.30 16 36 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.09 0.68 8.08 -2.39 -0.02 0.66 16 39 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.11 0.96 8.11 -2.39 -0.02 0.94 16 41 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.09 1.84 7.41 -2.39 -0.02 1.82 16 48 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.05 1.81 7.93 -2.38 -0.02 1.80 16 50 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 51 H 0.04 1.54 7.08 -2.39 -0.02 1.52 16 52 H 0.04 2.04 4.50 -2.38 -0.01 2.03 16 53 H 0.09 2.27 6.36 -2.39 -0.02 2.25 16 54 H 0.04 1.60 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -78.46 406.91 -0.61 -79.06 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.00 Total: 15.45 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 6.86 Total: 6.52 kcal Atomic # 7 Polarization: -110.55 SS G_CDS: -8.14 Total: -118.69 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -1.00 Total: -30.25 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.67 Total: 47.90 kcal Total: -78.46 -0.61 -79.06 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997169949.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.862 kcal (2) G-P(sol) polarization free energy of solvation -78.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds