Wall clock time and date at job start Sat Apr 11 2020 05:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.58071 * 2 1 4 4 C 1.53192 * 109.58643 * 239.71778 * 2 1 3 5 5 C 1.53033 * 109.33815 * 185.56248 * 4 2 1 6 6 H 1.09001 * 109.45998 * 301.35574 * 5 4 2 7 7 N 1.46502 * 109.46114 * 181.40159 * 5 4 2 8 8 C 1.36936 * 120.00095 * 154.99690 * 7 5 4 9 9 H 1.07994 * 120.00399 * 0.02562 * 8 7 5 10 10 C 1.38820 * 119.99782 * 179.97438 * 8 7 5 11 11 N 1.31618 * 120.00023 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00005 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.46902 * 60.00419 * 12 10 8 14 14 H 1.48501 * 109.47281 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47200 * 300.00657 * 12 10 8 16 16 C 1.53109 * 109.50802 * 61.34622 * 5 4 2 17 17 C 1.53195 * 109.32760 * 298.65862 * 16 5 4 18 18 N 1.46925 * 108.77481 * 54.63472 * 17 16 5 19 19 C 1.34780 * 120.63209 * 126.37060 * 18 17 16 20 20 O 1.21279 * 119.99985 * 185.08859 * 19 18 17 21 21 C 1.50697 * 119.99749 * 5.09305 * 19 18 17 22 22 O 1.42900 * 109.46866 * 180.02562 * 21 19 18 23 23 C 1.42906 * 113.99734 * 180.02562 * 22 21 19 24 24 C 1.53125 * 109.51788 * 269.68012 * 23 22 21 25 25 C 1.53040 * 109.27601 * 182.44390 * 24 23 22 26 26 N 1.46848 * 109.52422 * 59.17654 * 25 24 23 27 27 C 1.46902 * 110.99805 * 174.16275 * 26 25 24 28 28 C 1.46847 * 111.19992 * 298.26166 * 26 25 24 29 29 C 1.53037 * 109.52522 * 61.74052 * 28 26 25 30 30 H 1.08999 * 109.47491 * 183.86002 * 1 2 3 31 31 H 1.09006 * 109.47437 * 303.85964 * 1 2 3 32 32 H 1.08998 * 109.47643 * 63.85906 * 1 2 3 33 33 H 1.09009 * 109.49579 * 305.53009 * 4 2 1 34 34 H 1.08997 * 109.49820 * 65.59016 * 4 2 1 35 35 H 0.97003 * 119.99659 * 334.99706 * 7 5 4 36 36 H 0.96999 * 119.99655 * 179.97438 * 11 10 8 37 37 H 1.08998 * 109.49195 * 178.69781 * 16 5 4 38 38 H 1.08999 * 109.51060 * 58.62774 * 16 5 4 39 39 H 1.08997 * 109.58527 * 294.84159 * 17 16 5 40 40 H 1.08997 * 109.70103 * 174.48994 * 17 16 5 41 41 H 1.09007 * 109.46975 * 299.99816 * 21 19 18 42 42 H 1.08998 * 109.47649 * 59.99721 * 21 19 18 43 43 H 1.08991 * 109.52492 * 29.86779 * 23 22 21 44 44 H 1.09001 * 109.50513 * 302.37563 * 24 23 22 45 45 H 1.08995 * 109.50680 * 62.50519 * 24 23 22 46 46 H 1.09001 * 109.46249 * 299.16601 * 25 24 23 47 47 H 1.08991 * 109.45725 * 179.19003 * 25 24 23 48 48 H 1.09002 * 109.46917 * 184.21339 * 27 26 25 49 49 H 1.09004 * 109.46914 * 304.20675 * 27 26 25 50 50 H 1.08991 * 109.47247 * 64.21094 * 27 26 25 51 51 H 1.09001 * 109.46027 * 301.72189 * 28 26 25 52 52 H 1.08997 * 109.45424 * 181.75854 * 28 26 25 53 53 H 1.09003 * 109.50188 * 180.88160 * 29 28 26 54 54 H 1.08996 * 109.53265 * 60.78361 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5674 -0.8465 -1.1720 6 1 4.0061 0.1488 -1.1000 7 7 4.0646 -1.5124 -2.3785 8 6 5.3488 -1.2947 -2.8009 9 1 5.9954 -0.6324 -2.2445 10 6 5.8200 -1.9262 -3.9439 11 7 5.0322 -2.7337 -4.6218 12 14 7.5717 -1.6287 -4.5205 13 1 8.5207 -2.0521 -3.4596 14 1 7.8264 -2.4135 -5.7552 15 1 7.7603 -0.1835 -4.8053 16 6 3.9569 -1.6658 0.0614 17 6 3.4650 -0.9485 1.3225 18 7 2.0225 -0.7011 1.1936 19 6 1.1673 -1.1097 2.1518 20 8 -0.0282 -0.9825 1.9920 21 6 1.6966 -1.7244 3.4218 22 8 0.6035 -2.0736 4.2735 23 6 0.9983 -2.6672 5.5120 24 6 1.0754 -4.1877 5.3490 25 6 1.4390 -4.8222 6.6934 26 7 0.4228 -4.4700 7.6932 27 6 0.6642 -5.1738 8.9598 28 6 0.3635 -3.0175 7.9012 29 6 -0.0322 -2.3292 6.5929 30 1 -0.3634 -1.0253 0.0692 31 1 -0.3634 0.5726 0.8534 32 1 -0.3634 0.4527 -0.9225 33 1 1.6029 -1.7237 -1.2935 34 1 1.7654 -0.1644 -2.1370 35 1 3.4840 -2.1076 -2.8781 36 1 5.3614 -3.1746 -5.4206 37 1 5.0412 -1.7697 0.1014 38 1 3.4987 -2.6530 0.0022 39 1 3.9903 0.0002 1.4317 40 1 3.6520 -1.5723 2.1966 41 1 2.2693 -2.6200 3.1807 42 1 2.3404 -1.0077 3.9317 43 1 1.9744 -2.2815 5.8060 44 1 0.1092 -4.5676 5.0169 45 1 1.8381 -4.4365 4.6111 46 1 2.4115 -4.4524 7.0183 47 1 1.4806 -5.9058 6.5840 48 1 -0.1436 -4.9534 9.6576 49 1 0.7034 -6.2477 8.7769 50 1 1.6118 -4.8427 9.3845 51 1 1.3411 -2.6562 8.2204 52 1 -0.3759 -2.7906 8.6691 53 1 -0.0608 -1.2500 6.7437 54 1 -1.0159 -2.6791 6.2800 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044802052.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:04 Heat of formation + Delta-G solvation = -73.061182 kcal Electronic energy + Delta-G solvation = -30548.860490 eV Core-core repulsion = 26520.448723 eV Total energy + Delta-G solvation = -4028.411767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59730 -40.33854 -38.84606 -37.93105 -36.15175 -34.23401 -33.69900 -33.30490 -31.89344 -31.07865 -29.13314 -28.11208 -26.90893 -25.98365 -24.42519 -24.16932 -23.52999 -22.91235 -21.61905 -20.95603 -20.11009 -19.09259 -18.21356 -17.62003 -17.17276 -16.96455 -16.70150 -16.42449 -16.08041 -15.84725 -15.66859 -15.46501 -15.41198 -15.19605 -14.73895 -14.65725 -14.34619 -14.15452 -13.79323 -13.66958 -13.42590 -13.40525 -13.32509 -13.07078 -13.00923 -12.82432 -12.66711 -12.60799 -12.55083 -12.21652 -12.18281 -12.08816 -12.02756 -11.92391 -11.87241 -11.69095 -11.47548 -11.33927 -10.87111 -10.50625 -10.03544 -9.58604 -9.29202 -8.99970 -7.91733 -5.20673 1.48898 1.51595 1.57449 1.58241 1.71759 2.57781 2.76938 2.98136 3.41017 3.51985 3.74011 3.79080 3.79379 3.88796 4.02572 4.08762 4.10730 4.12664 4.18817 4.26585 4.27523 4.32700 4.35027 4.36414 4.54673 4.56822 4.58677 4.62673 4.67421 4.71853 4.72673 4.78802 4.84309 4.86441 4.94161 5.00992 5.02195 5.04490 5.07693 5.14984 5.20087 5.25100 5.28941 5.42943 5.51575 5.55937 5.70150 6.10225 6.11673 6.15209 6.29358 6.45906 7.20587 7.35334 8.11390 8.34303 9.31701 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016319 B = 0.002138 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.427137 B =13093.157372 C =14270.108531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.153 3.847 3 H 0.090 0.910 4 C -0.124 4.124 5 C 0.173 3.827 6 H 0.052 0.948 7 N -0.739 5.739 8 C -0.234 4.234 9 H 0.081 0.919 10 C -0.081 4.081 11 N -0.973 5.973 12 Si 0.972 3.028 13 H -0.275 1.275 14 H -0.301 1.301 15 H -0.278 1.278 16 C -0.142 4.142 17 C 0.113 3.887 18 N -0.603 5.603 19 C 0.508 3.492 20 O -0.556 6.556 21 C 0.045 3.955 22 O -0.384 6.384 23 C 0.086 3.914 24 C -0.139 4.139 25 C 0.062 3.938 26 N -0.565 5.565 27 C 0.026 3.974 28 C 0.063 3.937 29 C -0.112 4.112 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.369 0.631 36 H 0.249 0.751 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.082 0.918 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.032 0.968 51 H 0.045 0.955 52 H 0.089 0.911 53 H 0.080 0.920 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 1.218 28.907 29.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 H 0.107 0.893 4 C -0.163 4.163 5 C 0.064 3.936 6 H 0.070 0.930 7 N -0.378 5.378 8 C -0.366 4.366 9 H 0.099 0.901 10 C -0.272 4.272 11 N -0.624 5.624 12 Si 0.801 3.199 13 H -0.201 1.201 14 H -0.228 1.228 15 H -0.204 1.204 16 C -0.183 4.183 17 C -0.009 4.009 18 N -0.338 5.338 19 C 0.297 3.703 20 O -0.435 6.435 21 C -0.034 4.034 22 O -0.302 6.302 23 C 0.029 3.971 24 C -0.177 4.177 25 C -0.066 4.066 26 N -0.290 5.290 27 C -0.122 4.122 28 C -0.065 4.065 29 C -0.150 4.150 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.200 0.800 36 H 0.058 0.942 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.110 0.890 40 H 0.127 0.873 41 H 0.112 0.888 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.094 0.906 46 H 0.063 0.937 47 H 0.101 0.899 48 H 0.093 0.907 49 H 0.090 0.910 50 H 0.050 0.950 51 H 0.063 0.937 52 H 0.108 0.892 53 H 0.098 0.902 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.661 1.245 28.596 29.388 hybrid contribution 1.567 -0.344 -0.963 1.871 sum -5.095 0.901 27.633 28.113 Atomic orbital electron populations 1.22038 0.93076 1.02212 1.00673 1.21241 0.95131 0.95524 0.83089 0.89252 1.22157 0.96069 1.00331 0.97748 1.20436 0.92002 0.94922 0.86213 0.93035 1.42669 1.12149 1.54670 1.28271 1.19606 0.90041 1.21034 1.05905 0.90099 1.25580 1.02078 1.00579 0.99000 1.69827 1.37256 1.35358 1.19917 0.85228 0.80223 0.77358 0.77052 1.20143 1.22772 1.20432 1.22469 1.01227 0.99179 0.95389 1.21957 0.78470 1.01921 0.98534 1.48213 1.08227 1.57466 1.19910 1.20757 0.86271 0.78063 0.85196 1.90760 1.17096 1.55870 1.79739 1.22433 0.90078 1.01200 0.89687 1.88031 1.31398 1.81042 1.29777 1.22357 0.98772 0.92484 0.83507 1.22085 1.02536 0.95421 0.97649 1.22025 0.92769 1.00857 0.90972 1.61921 1.48802 1.07940 1.10327 1.22378 1.00457 0.99225 0.90149 1.22050 1.01060 0.86667 0.96684 1.21626 0.99010 1.00938 0.93408 0.93430 0.91942 0.92853 0.93505 0.91273 0.79969 0.94248 0.91170 0.93785 0.89004 0.87302 0.88777 0.87370 0.90298 0.92219 0.90627 0.93735 0.89912 0.90663 0.90956 0.94979 0.93688 0.89246 0.90155 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.61 7.59 71.98 0.55 -3.06 16 2 C 0.15 4.26 3.49 44.97 0.16 4.42 16 3 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.12 -4.11 4.84 30.67 0.15 -3.96 16 5 C 0.17 6.33 2.73 45.04 0.12 6.45 16 6 H 0.05 1.86 8.08 -2.39 -0.02 1.85 16 7 N -0.74 -36.09 5.12 -322.71 -1.65 -37.75 16 8 C -0.23 -12.48 9.93 84.04 0.83 -11.64 16 9 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 10 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 11 N -0.97 -59.32 13.06 21.65 0.28 -59.04 16 12 Si 0.97 45.14 29.55 68.60 2.03 47.17 16 13 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 14 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 15 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 16 C -0.14 -4.32 5.66 30.70 0.17 -4.14 16 17 C 0.11 2.36 6.33 86.36 0.55 2.91 16 18 N -0.60 -15.25 2.97 -795.04 -2.36 -17.61 16 19 C 0.51 13.79 7.68 87.66 0.67 14.46 16 20 O -0.56 -19.43 11.90 16.01 0.19 -19.24 16 21 C 0.05 0.87 4.63 71.23 0.33 1.20 16 22 O -0.38 -9.06 9.53 -129.94 -1.24 -10.29 16 23 C 0.09 1.44 2.68 30.68 0.08 1.52 16 24 C -0.14 -2.27 5.72 30.65 0.18 -2.10 16 25 C 0.06 0.81 5.46 86.33 0.47 1.28 16 26 N -0.56 -7.87 4.91 -922.59 -4.53 -12.40 16 27 C 0.03 0.25 9.59 127.69 1.22 1.48 16 28 C 0.06 0.77 5.46 86.33 0.47 1.24 16 29 C -0.11 -1.77 5.75 30.65 0.18 -1.59 16 30 H 0.05 1.62 6.73 -2.39 -0.02 1.60 16 31 H 0.06 1.91 6.76 -2.38 -0.02 1.89 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.37 19.96 7.80 -92.71 -0.72 19.24 16 36 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.11 1.57 5.96 -2.39 -0.01 1.55 16 41 H 0.09 1.50 7.30 -2.38 -0.02 1.48 16 42 H 0.11 1.40 8.05 -2.39 -0.02 1.38 16 43 H 0.08 0.98 7.79 -2.39 -0.02 0.96 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.08 1.13 7.96 -2.39 -0.02 1.11 16 46 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 48 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.07 0.65 8.09 -2.38 -0.02 0.63 16 50 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 51 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 52 H 0.09 0.93 8.12 -2.39 -0.02 0.91 16 53 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 54 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -71.07 412.28 -0.55 -71.62 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.13 Total: 33.14 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 6.60 Total: 4.40 kcal Atomic # 7 Polarization: -118.53 SS G_CDS: -8.26 Total: -126.79 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.05 Total: -29.53 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -71.07 -0.55 -71.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044802052.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.438 kcal (2) G-P(sol) polarization free energy of solvation -71.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds