Wall clock time and date at job start Sat Apr 11 2020 05:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.88694 * 2 1 4 4 C 1.55134 * 110.90662 * 124.09719 * 2 1 3 5 5 N 1.47425 * 104.72091 * 155.27554 * 4 2 1 6 6 C 1.34776 * 125.64574 * 155.81761 * 5 4 2 7 7 O 1.21282 * 120.00206 * 4.59632 * 6 5 4 8 8 C 1.50699 * 119.99796 * 184.59014 * 6 5 4 9 9 C 1.53000 * 109.46977 * 51.63796 * 8 6 5 10 10 C 1.52995 * 109.47600 * 291.63501 * 8 6 5 11 11 C 1.53007 * 109.47014 * 171.63431 * 8 6 5 12 12 N 1.46906 * 109.47012 * 279.52661 * 11 8 6 13 13 C 1.47026 * 110.99796 * 62.61402 * 12 11 8 14 14 C 1.53094 * 109.25301 * 182.35124 * 13 12 11 15 15 O 1.43016 * 109.29360 * 303.21769 * 14 13 12 16 16 C 1.43017 * 113.73847 * 58.64968 * 15 14 13 17 17 C 1.47007 * 110.99899 * 186.29550 * 12 11 8 18 18 C 1.47021 * 108.70395 * 335.54728 * 5 4 2 19 19 C 1.54320 * 107.27222 * 1.29275 * 18 5 4 20 20 H 1.09002 * 110.72258 * 140.54918 * 19 18 5 21 21 N 1.46495 * 110.72040 * 263.82808 * 19 18 5 22 22 C 1.36938 * 119.99892 * 273.54375 * 21 19 18 23 23 H 1.08000 * 119.99966 * 0.02562 * 22 21 19 24 24 C 1.38814 * 120.00117 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00129 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99998 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47265 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47292 * 119.99894 * 26 24 22 29 29 H 1.48506 * 109.46883 * 239.99638 * 26 24 22 30 30 H 1.08996 * 109.46979 * 183.87866 * 1 2 3 31 31 H 1.08997 * 109.47183 * 303.88253 * 1 2 3 32 32 H 1.09001 * 109.46950 * 63.88164 * 1 2 3 33 33 H 1.08998 * 110.49347 * 36.42927 * 4 2 1 34 34 H 1.09004 * 110.33597 * 274.03944 * 4 2 1 35 35 H 1.08997 * 109.47297 * 160.74143 * 9 8 6 36 36 H 1.09004 * 109.46814 * 280.74043 * 9 8 6 37 37 H 1.08996 * 109.47265 * 40.73473 * 9 8 6 38 38 H 1.09002 * 109.47064 * 311.63610 * 10 8 6 39 39 H 1.08993 * 109.47080 * 71.63389 * 10 8 6 40 40 H 1.08995 * 109.47135 * 191.63861 * 10 8 6 41 41 H 1.08993 * 109.46981 * 159.52733 * 11 8 6 42 42 H 1.09000 * 109.47151 * 39.52231 * 11 8 6 43 43 H 1.09000 * 109.46605 * 62.43792 * 13 12 11 44 44 H 1.09002 * 109.54339 * 302.31135 * 13 12 11 45 45 H 1.09001 * 109.50362 * 183.26556 * 14 13 12 46 46 H 1.09002 * 109.50914 * 63.17555 * 14 13 12 47 47 H 1.09007 * 109.50366 * 61.26656 * 16 15 14 48 48 H 1.09000 * 109.50659 * 181.34854 * 16 15 14 49 49 H 1.09000 * 109.50719 * 57.67299 * 17 12 11 50 50 H 1.09002 * 109.50623 * 297.54258 * 17 12 11 51 51 H 1.08999 * 109.88115 * 120.70775 * 18 5 4 52 52 H 1.08996 * 109.88436 * 241.71854 * 18 5 4 53 53 H 0.97003 * 120.00239 * 93.54777 * 21 19 18 54 54 H 0.96996 * 120.00480 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0836 -0.8124 1.2001 5 7 3.4272 -1.2434 0.7728 6 6 4.4477 -1.5622 1.5934 7 8 4.2757 -1.5869 2.7937 8 6 5.8024 -1.8882 1.0194 9 6 6.2324 -0.7742 0.0628 10 6 5.7286 -3.2135 0.2587 11 6 6.8218 -2.0076 2.1542 12 7 7.2589 -0.6660 2.5630 13 6 6.1323 0.1170 3.0915 14 6 6.6190 1.5236 3.4496 15 8 7.6977 1.4269 4.3837 16 6 8.8119 0.6717 3.9002 17 6 8.3477 -0.7439 3.5477 18 6 3.4674 -1.2740 -0.6965 19 6 2.0862 -0.8075 -1.2026 20 1 2.1922 -0.1692 -2.0797 21 7 1.2268 -1.9569 -1.4969 22 6 1.2815 -2.5553 -2.7274 23 1 1.9585 -2.1802 -3.4807 24 6 0.4676 -3.6447 -3.0062 25 7 -0.3563 -4.1028 -2.0877 26 14 0.5427 -4.4614 -4.6845 27 1 1.5425 -3.7622 -5.5309 28 1 0.9367 -5.8844 -4.5253 29 1 -0.7919 -4.3867 -5.3315 30 1 -0.3633 -1.0253 0.0695 31 1 -0.3633 0.5729 0.8531 32 1 -0.3633 0.4524 -0.9227 33 1 1.4524 -1.6787 1.3981 34 1 2.1515 -0.1809 2.0859 35 1 7.3115 -0.8184 -0.0847 36 1 5.7291 -0.9038 -0.8954 37 1 5.9629 0.1930 0.4868 38 1 5.2296 -3.9599 0.8767 39 1 5.1668 -3.0717 -0.6645 40 1 6.7369 -3.5532 0.0219 41 1 7.6825 -2.5812 1.8105 42 1 6.3628 -2.5145 3.0031 43 1 5.7383 -0.3700 3.9836 44 1 5.3488 0.1840 2.3366 45 1 5.8009 2.0892 3.8957 46 1 6.9627 2.0304 2.5479 47 1 9.2196 1.1532 3.0113 48 1 9.5802 0.6220 4.6719 49 1 9.1809 -1.3055 3.1253 50 1 7.9896 -1.2442 4.4474 51 1 4.2426 -0.5995 -1.0602 52 1 3.6677 -2.2885 -1.0408 53 1 0.6190 -2.2940 -0.8202 54 1 -0.9253 -4.8638 -2.2825 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054797777.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:12 Heat of formation + Delta-G solvation = -65.204445 kcal Electronic energy + Delta-G solvation = -32575.061782 eV Core-core repulsion = 28546.990709 eV Total energy + Delta-G solvation = -4028.071073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.02369 -40.37663 -39.19091 -37.30831 -35.84276 -35.19807 -33.59080 -32.18902 -32.13196 -29.40015 -29.16610 -28.31920 -27.41396 -25.94122 -25.38686 -24.96737 -24.02893 -22.23424 -21.28619 -20.69356 -19.83321 -19.24413 -17.76721 -17.53243 -17.31736 -17.06254 -16.69456 -16.47558 -16.14537 -16.03566 -15.73572 -15.54593 -15.42876 -15.02648 -14.72655 -14.62123 -14.31566 -14.21809 -13.79659 -13.47250 -13.42506 -13.26239 -13.14335 -13.02229 -12.92876 -12.84060 -12.83314 -12.49842 -12.37254 -12.28426 -12.15467 -12.05277 -12.04160 -11.97102 -11.71423 -11.42505 -11.39695 -11.32949 -10.96696 -10.65830 -10.59256 -9.57693 -9.38946 -8.97315 -7.90468 -5.18297 1.50114 1.51370 1.60189 1.60362 2.05876 2.59085 2.72772 2.95594 3.34121 3.42007 3.58829 3.82213 3.91335 3.92776 3.94553 4.00692 4.06795 4.09963 4.14027 4.21782 4.28342 4.36555 4.42170 4.52007 4.56115 4.60550 4.61454 4.67699 4.70057 4.70604 4.75517 4.85019 4.87528 4.88576 4.90498 4.93482 4.99021 5.05373 5.07627 5.09519 5.19507 5.27898 5.30671 5.40137 5.46412 5.54999 5.61364 5.87269 5.97006 6.17193 6.30936 6.61093 7.14961 7.38499 8.13509 8.35778 9.33110 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018712 B = 0.003057 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.987528 B = 9156.674560 C = 9971.486453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.098 4.098 3 H 0.111 0.889 4 C 0.115 3.885 5 N -0.603 5.603 6 C 0.528 3.472 7 O -0.586 6.586 8 C -0.071 4.071 9 C -0.123 4.123 10 C -0.141 4.141 11 C 0.078 3.922 12 N -0.524 5.524 13 C 0.030 3.970 14 C 0.065 3.935 15 O -0.408 6.408 16 C 0.063 3.937 17 C 0.015 3.985 18 C 0.072 3.928 19 C 0.160 3.840 20 H 0.082 0.918 21 N -0.724 5.724 22 C -0.229 4.229 23 H 0.085 0.915 24 C -0.075 4.075 25 N -0.971 5.971 26 Si 0.965 3.035 27 H -0.260 1.260 28 H -0.301 1.301 29 H -0.300 1.300 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.037 0.963 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.022 0.978 43 H 0.020 0.980 44 H 0.075 0.925 45 H 0.098 0.902 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.116 0.884 49 H 0.110 0.890 50 H 0.025 0.975 51 H 0.099 0.901 52 H 0.060 0.940 53 H 0.374 0.626 54 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.473 11.312 6.539 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.118 4.118 3 H 0.129 0.871 4 C -0.007 4.007 5 N -0.334 5.334 6 C 0.319 3.681 7 O -0.468 6.468 8 C -0.074 4.074 9 C -0.180 4.180 10 C -0.199 4.199 11 C -0.051 4.051 12 N -0.248 5.248 13 C -0.098 4.098 14 C -0.012 4.012 15 O -0.327 6.327 16 C -0.014 4.014 17 C -0.112 4.112 18 C -0.053 4.053 19 C 0.050 3.950 20 H 0.100 0.900 21 N -0.364 5.364 22 C -0.361 4.361 23 H 0.102 0.898 24 C -0.267 4.267 25 N -0.622 5.622 26 Si 0.796 3.204 27 H -0.184 1.184 28 H -0.229 1.229 29 H -0.228 1.228 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.125 0.875 42 H 0.040 0.960 43 H 0.038 0.962 44 H 0.093 0.907 45 H 0.116 0.884 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.134 0.866 49 H 0.128 0.872 50 H 0.043 0.957 51 H 0.117 0.883 52 H 0.078 0.922 53 H 0.207 0.793 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 18.672 11.582 6.777 22.994 hybrid contribution -1.400 -1.945 0.169 2.402 sum 17.272 9.637 6.946 20.963 Atomic orbital electron populations 1.21471 0.93761 1.01169 1.01929 1.22613 0.96539 0.99303 0.93297 0.87078 1.22228 0.83083 0.97374 0.98056 1.48461 1.11491 1.65508 1.07980 1.20780 0.86398 0.75338 0.85617 1.90671 1.84747 1.55020 1.16369 1.20774 0.90116 0.99105 0.97396 1.21892 1.03174 0.95727 0.97255 1.21927 1.04152 0.93973 0.99799 1.22052 0.97473 0.90008 0.95523 1.62415 1.08881 1.14550 1.38992 1.22876 0.93611 0.94831 0.98481 1.22753 0.89788 0.95224 0.93435 1.87944 1.27940 1.73855 1.42927 1.22834 0.88289 0.89376 1.00870 1.22870 0.95452 0.99022 0.93903 1.23494 1.01190 1.02087 0.78506 1.21518 0.88597 0.88707 0.96167 0.90033 1.42641 1.46127 1.34019 1.13587 1.19677 1.16738 1.08210 0.91445 0.89757 1.25476 0.99839 1.00470 1.00962 1.69825 1.29067 1.28262 1.35014 0.85179 0.77024 0.77794 0.80410 1.18416 1.22927 1.22774 0.94598 0.91236 0.92304 0.94351 0.90841 0.89654 0.91218 0.92707 0.94414 0.91422 0.88542 0.87480 0.95996 0.96161 0.90651 0.88434 0.91296 0.91206 0.86646 0.87229 0.95704 0.88348 0.92190 0.79278 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.78 8.85 71.98 0.64 -3.15 16 2 C -0.10 -2.80 3.53 -9.32 -0.03 -2.83 16 3 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 4 C 0.12 3.72 6.34 86.93 0.55 4.27 16 5 N -0.60 -19.02 3.30 -811.36 -2.67 -21.70 16 6 C 0.53 16.82 4.50 87.66 0.39 17.21 16 7 O -0.59 -22.32 12.99 -3.04 -0.04 -22.36 16 8 C -0.07 -1.72 0.50 -52.93 -0.03 -1.74 16 9 C -0.12 -2.44 6.75 71.98 0.49 -1.95 16 10 C -0.14 -3.36 8.26 71.98 0.59 -2.77 16 11 C 0.08 1.78 4.21 86.30 0.36 2.15 16 12 N -0.52 -11.34 3.81 -895.19 -3.41 -14.75 16 13 C 0.03 0.79 3.64 86.31 0.31 1.10 16 14 C 0.06 1.41 7.01 72.01 0.50 1.91 16 15 O -0.41 -9.35 10.83 -148.98 -1.61 -10.96 16 16 C 0.06 1.03 7.01 72.01 0.50 1.53 16 17 C 0.02 0.28 5.66 86.31 0.49 0.77 16 18 C 0.07 2.17 4.99 86.73 0.43 2.60 16 19 C 0.16 5.39 3.36 46.18 0.16 5.54 16 20 H 0.08 2.58 8.12 -2.39 -0.02 2.56 16 21 N -0.72 -32.72 4.61 -317.33 -1.46 -34.19 16 22 C -0.23 -11.53 9.98 84.03 0.84 -10.69 16 23 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 24 C -0.08 -4.10 5.50 84.86 0.47 -3.63 16 25 N -0.97 -57.63 13.06 21.65 0.28 -57.35 16 26 Si 0.97 44.16 29.55 68.60 2.03 46.19 16 27 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 28 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 29 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 30 H 0.03 1.32 6.37 -2.39 -0.02 1.31 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 33 H 0.04 1.46 7.99 -2.39 -0.02 1.44 16 34 H 0.07 2.25 8.08 -2.38 -0.02 2.23 16 35 H 0.08 1.43 7.98 -2.39 -0.02 1.41 16 36 H 0.07 1.34 4.92 -2.38 -0.01 1.32 16 37 H 0.05 1.15 6.38 -2.39 -0.02 1.14 16 38 H 0.04 1.04 8.09 -2.39 -0.02 1.03 16 39 H 0.07 1.75 5.25 -2.39 -0.01 1.74 16 40 H 0.10 1.71 7.87 -2.39 -0.02 1.69 16 41 H 0.11 1.88 7.75 -2.39 -0.02 1.86 16 42 H 0.02 0.64 7.19 -2.39 -0.02 0.62 16 43 H 0.02 0.66 7.23 -2.39 -0.02 0.65 16 44 H 0.08 2.13 3.91 -2.39 -0.01 2.12 16 45 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 48 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.11 1.40 8.12 -2.39 -0.02 1.38 16 50 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.10 2.37 5.19 -2.39 -0.01 2.35 16 52 H 0.06 2.10 5.95 -2.39 -0.01 2.09 16 53 H 0.37 18.91 6.10 -92.71 -0.57 18.34 16 54 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -66.81 393.34 0.11 -66.70 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: 0.33 Total: 38.11 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 6.67 Total: 10.31 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -7.27 Total: -127.98 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -1.65 Total: -33.33 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -66.81 0.11 -66.70 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054797777.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.500 kcal (2) G-P(sol) polarization free energy of solvation -66.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds