Wall clock time and date at job start Sat Apr 11 2020 05:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 110.34940 * 2 1 4 4 C 1.54596 * 110.30998 * 122.14155 * 2 1 3 5 5 C 1.54939 * 102.92049 * 140.87544 * 4 2 1 6 6 N 1.48533 * 103.22561 * 322.58709 * 5 4 2 7 7 C 1.46903 * 110.99826 * 159.72053 * 6 5 4 8 8 C 1.50696 * 109.47146 * 52.60331 * 7 6 5 9 9 O 1.21285 * 120.00207 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00177 * 180.02562 * 8 7 6 11 11 C 1.46925 * 120.63473 * 179.97438 * 10 8 7 12 12 C 1.53186 * 108.77802 * 233.62908 * 11 10 8 13 13 C 1.53036 * 109.31387 * 305.36191 * 12 11 10 14 14 N 1.46503 * 109.45969 * 181.38413 * 13 12 11 15 15 C 1.36937 * 120.00054 * 299.99757 * 14 13 12 16 16 H 1.07992 * 120.00088 * 322.25053 * 15 14 13 17 17 C 1.38812 * 119.99775 * 142.24900 * 15 14 13 18 18 N 1.31618 * 120.00258 * 158.52128 * 17 15 14 19 19 Si 1.86803 * 119.99738 * 338.52107 * 17 15 14 20 20 H 1.48500 * 109.46894 * 95.99393 * 19 17 15 21 21 H 1.48508 * 109.46951 * 215.99214 * 19 17 15 22 22 H 1.48495 * 109.47581 * 335.98882 * 19 17 15 23 23 C 1.46503 * 119.99889 * 120.00575 * 14 13 12 24 24 C 1.52995 * 109.47323 * 83.25012 * 23 14 13 25 25 O 1.42899 * 109.47133 * 295.00131 * 24 23 14 26 26 C 1.53045 * 109.53611 * 61.36850 * 13 12 11 27 27 C 1.46931 * 120.62833 * 0.02562 * 10 8 7 28 28 C 1.47902 * 105.82148 * 39.20728 * 6 5 4 29 29 H 1.09007 * 109.46937 * 182.14119 * 1 2 3 30 30 H 1.08999 * 109.47677 * 302.13770 * 1 2 3 31 31 H 1.09001 * 109.47037 * 62.14237 * 1 2 3 32 32 H 1.09003 * 110.72127 * 259.23579 * 4 2 1 33 33 H 1.08993 * 110.72032 * 22.33920 * 4 2 1 34 34 H 1.08994 * 110.66586 * 204.14902 * 5 4 2 35 35 H 1.09003 * 110.66468 * 81.01873 * 5 4 2 36 36 H 1.09007 * 109.47057 * 292.60461 * 7 6 5 37 37 H 1.09004 * 109.47109 * 172.60346 * 7 6 5 38 38 H 1.09000 * 109.58813 * 113.83654 * 11 10 8 39 39 H 1.09006 * 109.58036 * 353.41782 * 11 10 8 40 40 H 1.08999 * 109.50139 * 185.41152 * 12 11 10 41 41 H 1.09007 * 109.52477 * 65.33210 * 12 11 10 42 42 H 1.08998 * 109.46361 * 301.36354 * 13 12 11 43 43 H 0.96998 * 120.00431 * 179.97438 * 18 17 15 44 44 H 1.09002 * 109.46736 * 323.25086 * 23 14 13 45 45 H 1.08998 * 109.46796 * 203.25202 * 23 14 13 46 46 H 1.08998 * 109.47410 * 55.00078 * 24 23 14 47 47 H 1.09006 * 109.47285 * 175.00170 * 24 23 14 48 48 H 0.96703 * 113.99942 * 179.97438 * 25 24 23 49 49 H 1.08995 * 109.49861 * 58.58329 * 26 13 12 50 50 H 1.09004 * 109.49883 * 178.68719 * 26 13 12 51 51 H 1.08996 * 109.58586 * 246.15596 * 27 10 8 52 52 H 1.08997 * 109.58719 * 6.44277 * 27 10 8 53 53 H 1.09002 * 109.91780 * 94.01958 * 28 6 5 54 54 H 1.09007 * 109.91781 * 215.11551 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9091 1.0220 0.0000 4 6 2.0666 -0.7713 1.2276 5 6 3.2856 -1.5347 0.6515 6 7 2.8314 -1.9235 -0.7082 7 6 3.9752 -2.2260 -1.5789 8 6 4.8665 -3.2367 -0.9043 9 8 4.5776 -3.6627 0.1939 10 7 5.9852 -3.6665 -1.5209 11 6 6.8645 -4.6511 -0.8757 12 6 8.2906 -4.0927 -0.8441 13 6 8.7144 -3.7063 -2.2630 14 7 10.0899 -3.2026 -2.2413 15 6 10.4041 -2.1013 -1.4906 16 1 9.7074 -1.2792 -1.4201 17 6 11.6181 -2.0418 -0.8201 18 7 12.1150 -0.8772 -0.4607 19 14 12.5465 -3.6146 -0.4278 20 1 13.5665 -3.8623 -1.4783 21 1 13.2165 -3.4783 0.8905 22 1 11.5946 -4.7535 -0.3838 23 6 11.1293 -3.8770 -3.0231 24 6 11.0846 -3.3782 -4.4688 25 8 9.8476 -3.7676 -5.0690 26 6 7.7810 -2.6173 -2.7971 27 6 6.3494 -3.1585 -2.8506 28 6 2.0645 -0.7682 -1.2229 29 1 -0.3633 -1.0270 0.0384 30 1 -0.3634 0.5466 0.8702 31 1 -0.3633 0.4802 -0.9086 32 1 2.3791 -0.0805 2.0108 33 1 1.3162 -1.4660 1.6048 34 1 3.5047 -2.4181 1.2511 35 1 4.1564 -0.8816 0.5941 36 1 4.5396 -1.3128 -1.7679 37 1 3.6150 -2.6327 -2.5239 38 1 6.8489 -5.5819 -1.4427 39 1 6.5215 -4.8354 0.1425 40 1 8.9699 -4.8515 -0.4556 41 1 8.3230 -3.2124 -0.2022 42 1 8.6583 -4.5817 -2.9099 43 1 12.9632 -0.8356 0.0082 44 1 10.9570 -4.9532 -3.0046 45 1 12.1067 -3.6581 -2.5932 46 1 11.1680 -2.2914 -4.4809 47 1 11.9128 -3.8125 -5.0288 48 1 9.7499 -3.4838 -5.9882 49 1 7.8177 -1.7508 -2.1369 50 1 8.0976 -2.3259 -3.7987 51 1 6.2918 -3.9672 -3.5791 52 1 5.6652 -2.3597 -3.1365 53 1 2.7162 -0.1224 -1.8113 54 1 1.2348 -1.1174 -1.8375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098478048.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:40 Heat of formation + Delta-G solvation = -71.936061 kcal Electronic energy + Delta-G solvation = -31637.660047 eV Core-core repulsion = 27609.297069 eV Total energy + Delta-G solvation = -4028.362978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.45304 -39.93265 -38.96754 -37.65288 -36.33944 -34.44060 -33.92471 -32.68084 -32.01253 -30.69196 -29.60550 -28.50739 -26.68234 -25.76321 -24.64849 -23.97892 -22.86933 -22.34009 -21.35457 -20.97486 -19.99835 -18.55748 -18.21981 -18.02714 -17.42787 -16.89425 -16.73800 -16.57267 -16.23853 -16.04686 -15.49572 -15.18930 -15.00601 -14.77896 -14.74191 -14.44742 -14.34869 -14.28482 -14.07024 -14.01265 -13.74270 -13.46924 -13.29599 -13.17106 -12.95427 -12.77890 -12.59792 -12.39623 -12.34812 -12.19190 -12.09755 -11.97127 -11.77676 -11.73737 -11.64693 -11.51920 -11.40643 -11.11148 -10.69459 -10.64658 -10.53307 -9.62582 -9.40108 -8.69200 -8.17550 -5.53707 1.26050 1.40514 1.49819 1.60902 1.96737 2.40943 3.03255 3.05960 3.30135 3.46141 3.62597 3.68619 3.83626 3.95567 3.99163 4.14995 4.24261 4.25020 4.30793 4.33254 4.38200 4.43983 4.45570 4.52626 4.55008 4.58099 4.65173 4.67141 4.69404 4.78341 4.84730 4.85594 4.87855 4.95058 4.95449 5.05064 5.07991 5.16981 5.18430 5.18786 5.24341 5.26458 5.44978 5.45980 5.57519 5.68089 5.85558 5.96570 5.99184 6.22866 6.46986 7.02964 7.10266 7.20369 7.68699 8.11864 9.02908 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015759 B = 0.002854 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.390426 B = 9808.838560 C =10369.007288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.102 4.102 3 H 0.079 0.921 4 C -0.118 4.118 5 C 0.032 3.968 6 N -0.514 5.514 7 C 0.033 3.967 8 C 0.508 3.492 9 O -0.571 6.571 10 N -0.607 5.607 11 C 0.124 3.876 12 C -0.134 4.134 13 C 0.189 3.811 14 N -0.605 5.605 15 C -0.232 4.232 16 H 0.040 0.960 17 C -0.024 4.024 18 N -0.953 5.953 19 Si 0.933 3.067 20 H -0.272 1.272 21 H -0.316 1.316 22 H -0.258 1.258 23 C 0.127 3.873 24 C 0.072 3.928 25 O -0.570 6.570 26 C -0.124 4.124 27 C 0.116 3.884 28 C 0.037 3.963 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.022 0.978 36 H 0.073 0.927 37 H 0.132 0.868 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.033 0.967 42 H 0.077 0.923 43 H 0.260 0.740 44 H 0.058 0.942 45 H 0.049 0.951 46 H 0.027 0.973 47 H 0.056 0.944 48 H 0.387 0.613 49 H 0.028 0.972 50 H 0.080 0.920 51 H 0.095 0.905 52 H 0.102 0.898 53 H 0.052 0.948 54 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.539 -2.974 -9.189 20.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.121 4.121 3 H 0.098 0.902 4 C -0.156 4.156 5 C -0.096 4.096 6 N -0.239 5.239 7 C -0.098 4.098 8 C 0.297 3.703 9 O -0.450 6.450 10 N -0.340 5.340 11 C 0.001 3.999 12 C -0.174 4.174 13 C 0.083 3.917 14 N -0.327 5.327 15 C -0.362 4.362 16 H 0.058 0.942 17 C -0.220 4.220 18 N -0.598 5.598 19 Si 0.762 3.238 20 H -0.199 1.199 21 H -0.246 1.246 22 H -0.182 1.182 23 C 0.002 3.998 24 C -0.008 4.008 25 O -0.377 6.377 26 C -0.164 4.164 27 C -0.006 4.006 28 C -0.091 4.091 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.041 0.959 36 H 0.091 0.909 37 H 0.149 0.851 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.046 0.954 47 H 0.074 0.926 48 H 0.235 0.765 49 H 0.047 0.953 50 H 0.098 0.902 51 H 0.113 0.887 52 H 0.121 0.879 53 H 0.070 0.930 54 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.975 -3.872 -7.968 20.941 hybrid contribution 2.142 0.804 0.295 2.307 sum -16.832 -3.069 -7.674 18.752 Atomic orbital electron populations 1.21776 0.93011 1.02037 1.02419 1.22020 0.97504 0.98912 0.93710 0.90226 1.22607 0.96749 0.98608 0.97637 1.23346 0.96152 0.98924 0.91142 1.64690 1.19696 1.37420 1.02054 1.22311 0.91675 0.97525 0.98292 1.20999 0.81351 0.82543 0.85402 1.90602 1.73371 1.59327 1.21734 1.48252 1.22770 1.43147 1.19869 1.21488 0.88315 0.91316 0.98759 1.22260 0.95301 0.99899 0.99989 1.20376 0.83145 0.95133 0.93026 1.44228 1.05363 1.31972 1.51138 1.18485 1.02018 0.93857 1.21859 0.94241 1.26043 0.99393 0.98318 0.98240 1.69980 1.20203 1.25452 1.44193 0.86003 0.78784 0.82870 0.76104 1.19893 1.24573 1.18223 1.21362 0.92110 0.95986 0.90309 1.22588 0.86037 0.97722 0.94457 1.86439 1.38510 1.81085 1.31662 1.22085 0.94478 0.98432 1.01404 1.21933 0.95751 1.00283 0.82630 1.23132 0.98231 0.90351 0.97338 0.92713 0.92096 0.91473 0.90679 0.90769 0.90015 0.95947 0.90942 0.85055 0.89458 0.91098 0.92504 0.94843 0.90512 0.93135 0.92415 0.93344 0.95426 0.92603 0.76525 0.95290 0.90193 0.88697 0.87942 0.92967 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.90 71.98 0.64 -1.12 16 2 C -0.10 -1.70 3.59 -9.92 -0.04 -1.74 16 3 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 4 C -0.12 -2.44 6.61 31.80 0.21 -2.23 16 5 C 0.03 0.87 5.30 86.65 0.46 1.33 16 6 N -0.51 -12.41 5.26 -887.55 -4.67 -17.07 16 7 C 0.03 0.74 3.86 85.55 0.33 1.07 16 8 C 0.51 15.33 7.41 87.66 0.65 15.98 16 9 O -0.57 -21.34 12.93 -3.04 -0.04 -21.38 16 10 N -0.61 -17.30 2.97 -819.00 -2.43 -19.73 16 11 C 0.12 3.85 6.43 86.36 0.56 4.40 16 12 C -0.13 -5.05 5.31 30.67 0.16 -4.89 16 13 C 0.19 6.86 1.93 45.02 0.09 6.95 16 14 N -0.61 -26.57 2.01 -677.89 -1.37 -27.93 16 15 C -0.23 -12.57 8.69 84.03 0.73 -11.84 16 16 H 0.04 2.42 7.04 -2.91 -0.02 2.40 16 17 C -0.02 -1.40 5.27 84.86 0.45 -0.95 16 18 N -0.95 -59.03 13.97 21.65 0.30 -58.73 16 19 Si 0.93 45.41 24.97 68.60 1.71 47.12 16 20 H -0.27 -12.37 6.71 99.48 0.67 -11.71 16 21 H -0.32 -16.06 7.11 99.48 0.71 -15.35 16 22 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 23 C 0.13 5.03 4.63 86.38 0.40 5.43 16 24 C 0.07 2.32 7.39 71.98 0.53 2.85 16 25 O -0.57 -15.30 12.07 -148.98 -1.80 -17.09 16 26 C -0.12 -3.99 5.30 30.66 0.16 -3.82 16 27 C 0.12 2.70 6.34 86.35 0.55 3.24 16 28 C 0.04 0.65 6.35 86.44 0.55 1.20 16 29 H 0.05 0.78 8.11 -2.38 -0.02 0.76 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.53 7.84 -2.39 -0.02 1.51 16 34 H 0.08 2.74 5.97 -2.39 -0.01 2.72 16 35 H 0.02 0.66 8.02 -2.39 -0.02 0.64 16 36 H 0.07 1.55 7.36 -2.38 -0.02 1.54 16 37 H 0.13 2.21 7.94 -2.38 -0.02 2.19 16 38 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.07 2.41 7.00 -2.38 -0.02 2.40 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.03 1.50 7.71 -2.38 -0.02 1.48 16 42 H 0.08 2.56 7.51 -2.39 -0.02 2.54 16 43 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 44 H 0.06 2.09 8.06 -2.39 -0.02 2.07 16 45 H 0.05 2.12 3.61 -2.39 -0.01 2.11 16 46 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 48 H 0.39 6.50 9.12 -74.06 -0.68 5.83 16 49 H 0.03 1.13 7.06 -2.39 -0.02 1.11 16 50 H 0.08 2.51 7.63 -2.38 -0.02 2.49 16 51 H 0.09 1.78 8.14 -2.39 -0.02 1.77 16 52 H 0.10 1.83 5.93 -2.39 -0.01 1.81 16 53 H 0.05 0.85 7.57 -2.39 -0.02 0.83 16 54 H 0.09 1.43 7.69 -2.38 -0.02 1.41 16 Total: -1.00 -72.46 401.19 -1.70 -74.16 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.17 Total: 24.79 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: 6.43 Total: 15.88 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -8.17 Total: -123.48 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -1.84 Total: -38.48 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.71 Total: 47.12 kcal Total: -72.46 -1.70 -74.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098478048.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.225 kcal (2) G-P(sol) polarization free energy of solvation -72.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds