Wall clock time and date at job start Sat Apr 11 2020 05:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00271 * 2 1 4 4 O 1.21278 * 119.99854 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00161 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.46912 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.46886 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 O 1.21286 * 120.00016 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00161 * 179.97438 * 9 8 7 12 12 C 1.46926 * 120.62694 * 0.02562 * 11 9 8 13 13 C 1.53196 * 108.77443 * 126.36696 * 12 11 9 14 14 C 1.53042 * 109.31361 * 54.63479 * 13 12 11 15 15 H 1.08998 * 109.46122 * 58.64287 * 14 13 12 16 16 C 1.52999 * 109.45972 * 178.61681 * 14 13 12 17 17 N 1.46503 * 109.46957 * 294.99714 * 16 14 13 18 18 C 1.36933 * 120.00242 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99785 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00211 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00210 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99870 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.46767 * 90.00433 * 22 20 18 24 24 H 1.48501 * 109.47019 * 210.00216 * 22 20 18 25 25 H 1.48498 * 109.47088 * 330.00002 * 22 20 18 26 26 C 1.53043 * 109.53643 * 298.63061 * 14 13 12 27 27 H 1.09001 * 109.50139 * 301.41849 * 26 14 13 28 28 C 1.52994 * 109.49862 * 181.31785 * 26 14 13 29 29 C 1.46921 * 120.63232 * 179.71738 * 11 9 8 30 30 H 1.09002 * 109.47021 * 299.99722 * 1 2 3 31 31 H 1.09001 * 109.47001 * 59.99554 * 1 2 3 32 32 H 1.09004 * 109.47223 * 179.97438 * 1 2 3 33 33 H 0.97005 * 120.00266 * 180.02562 * 2 1 3 34 34 H 1.09002 * 109.47152 * 60.00245 * 5 3 2 35 35 H 1.09001 * 109.46980 * 300.00345 * 5 3 2 36 36 H 1.09001 * 109.47194 * 299.99742 * 6 5 3 37 37 H 1.08992 * 109.47399 * 59.99914 * 6 5 3 38 38 H 1.09001 * 109.47109 * 299.99380 * 7 6 5 39 39 H 1.09002 * 109.47508 * 59.99571 * 7 6 5 40 40 H 1.08992 * 109.47098 * 299.99158 * 8 7 6 41 41 H 1.09001 * 109.47583 * 60.00267 * 8 7 6 42 42 H 1.09009 * 109.58375 * 246.14950 * 12 11 9 43 43 H 1.08995 * 109.59224 * 6.57765 * 12 11 9 44 44 H 1.09006 * 109.49622 * 174.58243 * 13 12 11 45 45 H 1.09000 * 109.49898 * 294.64865 * 13 12 11 46 46 H 1.08993 * 109.47375 * 54.99397 * 16 14 13 47 47 H 1.08997 * 109.47125 * 174.99792 * 16 14 13 48 48 H 0.97002 * 119.99729 * 0.02562 * 17 16 14 49 49 H 0.96998 * 119.99947 * 179.97438 * 21 20 18 50 50 H 1.09000 * 109.46792 * 59.99982 * 28 26 14 51 51 H 1.08997 * 109.47168 * 180.02562 * 28 26 14 52 52 H 1.09009 * 109.47211 * 300.00418 * 28 26 14 53 53 H 1.09004 * 109.58903 * 353.42623 * 29 11 9 54 54 H 1.09006 * 109.58647 * 113.84762 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 -0.0006 6 6 4.1559 2.6096 0.0002 7 6 5.6859 2.6096 -0.0011 8 6 6.1959 4.0521 0.0004 9 6 7.7029 4.0521 -0.0002 10 8 8.3093 3.0017 -0.0012 11 7 8.3769 5.2193 0.0003 12 6 7.6562 6.4997 0.0020 13 6 8.1648 7.3501 1.1703 14 6 9.6862 7.4852 1.0734 15 1 9.9501 7.9438 0.1205 16 6 10.1940 8.3627 2.2193 17 7 9.6732 9.7228 2.0606 18 6 9.9967 10.6907 2.9736 19 1 10.6355 10.4514 3.8109 20 6 9.5027 11.9793 2.8235 21 7 9.8133 12.9096 3.7013 22 14 8.3973 12.3930 1.3756 23 1 6.9800 12.1603 1.7527 24 1 8.5827 13.8185 1.0028 25 1 8.7505 11.5293 0.2205 26 6 10.3301 6.1000 1.1682 27 1 10.0464 5.6306 2.1101 28 6 11.8523 6.2390 1.1042 29 6 9.8460 5.2354 0.0060 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.9500 -0.8401 -0.0004 34 1 4.0089 0.6535 -0.8909 35 1 4.0096 0.6530 0.8891 36 1 3.7923 3.1241 -0.8893 37 1 3.7929 3.1229 0.8906 38 1 6.0499 2.0951 0.8883 39 1 6.0486 2.0964 -0.8917 40 1 5.8320 4.5670 -0.8887 41 1 5.8333 4.5649 0.8913 42 1 7.8382 7.0226 -0.9370 43 1 6.5881 6.3178 0.1203 44 1 7.7083 8.3390 1.1263 45 1 7.9011 6.8692 2.1123 46 1 9.8537 7.9520 3.1698 47 1 11.2836 8.3867 2.2032 48 1 9.0991 9.9376 1.3088 49 1 9.4684 13.8101 3.5962 50 1 12.1959 6.8567 1.9340 51 1 12.3104 5.2523 1.1713 52 1 12.1352 6.7072 0.1613 53 1 10.2221 4.2195 0.1268 54 1 10.2104 5.6529 -0.9327 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185788790.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:49 Heat of formation + Delta-G solvation = -112.906783 kcal Electronic energy + Delta-G solvation = -29468.697147 eV Core-core repulsion = 25438.557545 eV Total energy + Delta-G solvation = -4030.139602 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.38560 -40.66892 -39.33452 -36.70558 -36.18792 -35.54227 -35.00544 -33.62997 -32.31383 -31.94156 -28.82067 -28.48028 -27.45622 -25.68796 -24.90046 -23.70345 -22.71537 -22.22425 -21.31554 -21.11140 -19.92749 -19.58197 -18.16180 -17.89368 -17.20025 -17.04791 -16.76836 -16.59642 -16.52921 -16.01006 -15.66175 -15.45340 -15.20136 -14.84554 -14.80884 -14.61059 -14.52619 -14.24414 -13.97773 -13.89618 -13.43271 -13.30123 -13.20764 -13.15126 -13.11030 -12.89962 -12.87672 -12.71250 -12.41738 -12.22146 -12.17284 -12.03937 -11.95833 -11.84582 -11.64071 -11.49052 -11.43941 -11.22360 -10.95961 -10.92472 -10.70988 -10.12022 -9.61911 -9.26240 -8.01504 -5.34846 1.38173 1.43059 1.50380 1.64617 1.65831 2.02437 2.35564 2.49887 3.29850 3.49418 3.55649 3.74112 3.82526 3.85772 3.91382 4.01462 4.04982 4.07175 4.30036 4.37963 4.38894 4.41589 4.49170 4.53705 4.60230 4.61833 4.62542 4.67315 4.74786 4.79706 4.81714 4.83947 4.86883 4.91184 4.95323 5.00966 5.07244 5.09480 5.11138 5.20621 5.27037 5.34385 5.36525 5.43517 5.50274 5.52685 5.61423 5.76973 6.22213 6.43769 6.57289 7.09699 7.18508 7.29372 7.85577 8.06312 9.20213 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012629 B = 0.001974 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.613357 B =14179.789498 C =15921.302777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.728 5.728 3 C 0.503 3.497 4 O -0.591 6.591 5 C -0.135 4.135 6 C -0.100 4.100 7 C -0.094 4.094 8 C -0.139 4.139 9 C 0.511 3.489 10 O -0.584 6.584 11 N -0.611 5.611 12 C 0.109 3.891 13 C -0.128 4.128 14 C -0.083 4.083 15 H 0.077 0.923 16 C 0.158 3.842 17 N -0.754 5.754 18 C -0.235 4.235 19 H 0.051 0.949 20 C -0.066 4.066 21 N -0.986 5.986 22 Si 0.957 3.043 23 H -0.275 1.275 24 H -0.298 1.298 25 H -0.246 1.246 26 C -0.087 4.087 27 H 0.063 0.937 28 C -0.146 4.146 29 C 0.120 3.880 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.109 0.891 33 H 0.420 0.580 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.110 0.890 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.014 0.986 47 H 0.029 0.971 48 H 0.367 0.633 49 H 0.257 0.743 50 H 0.054 0.946 51 H 0.067 0.933 52 H 0.063 0.937 53 H 0.082 0.918 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.560 -30.457 -13.384 35.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.380 5.380 3 C 0.291 3.709 4 O -0.471 6.471 5 C -0.175 4.175 6 C -0.138 4.138 7 C -0.132 4.132 8 C -0.179 4.179 9 C 0.301 3.699 10 O -0.465 6.465 11 N -0.343 5.343 12 C -0.013 4.013 13 C -0.166 4.166 14 C -0.102 4.102 15 H 0.095 0.905 16 C 0.032 3.968 17 N -0.400 5.400 18 C -0.366 4.366 19 H 0.069 0.931 20 C -0.258 4.258 21 N -0.636 5.636 22 Si 0.783 3.217 23 H -0.201 1.201 24 H -0.225 1.225 25 H -0.171 1.171 26 C -0.107 4.107 27 H 0.081 0.919 28 C -0.203 4.203 29 C -0.002 4.002 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.127 0.873 33 H 0.256 0.744 34 H 0.134 0.866 35 H 0.132 0.868 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.128 0.872 44 H 0.090 0.910 45 H 0.080 0.920 46 H 0.032 0.968 47 H 0.047 0.953 48 H 0.201 0.799 49 H 0.066 0.934 50 H 0.073 0.927 51 H 0.086 0.914 52 H 0.082 0.918 53 H 0.100 0.900 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.592 -30.218 -13.208 35.669 hybrid contribution -0.178 0.752 -0.047 0.774 sum -13.769 -29.465 -13.255 35.121 Atomic orbital electron populations 1.21631 0.79458 1.04027 1.01125 1.45838 1.08203 1.09041 1.74965 1.21366 0.91637 0.83372 0.74540 1.90701 1.71757 1.33203 1.51475 1.21698 0.89381 0.99832 1.06556 1.21267 0.94091 0.95597 1.02814 1.21252 0.94208 0.94685 1.03083 1.21779 0.89522 1.00611 1.05959 1.21271 0.91501 0.82541 0.74545 1.90651 1.71469 1.32185 1.52211 1.48271 1.07057 1.06525 1.72474 1.21943 0.97668 0.82812 0.98905 1.21924 0.95275 1.00414 0.99010 1.21291 0.95472 0.94844 0.98595 0.90496 1.20879 0.96416 0.83240 0.96221 1.42678 1.60467 1.07244 1.29607 1.19026 1.24044 0.90089 1.03478 0.93093 1.25561 1.02773 0.95715 1.01707 1.69902 1.51336 1.03044 1.39365 0.85385 0.79063 0.77061 0.80171 1.20083 1.22509 1.17073 1.21251 0.96364 0.94352 0.98729 0.91859 1.21812 0.93728 1.02251 1.02535 1.21523 0.79493 1.00844 0.98370 0.93603 0.93475 0.87273 0.74374 0.86554 0.86844 0.91816 0.92235 0.91859 0.91354 0.86908 0.87624 0.89711 0.87230 0.90960 0.92036 0.96789 0.95341 0.79898 0.93397 0.92743 0.91415 0.91810 0.89993 0.90393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.68 10.70 127.77 1.37 2.04 16 2 N -0.73 -6.26 5.71 -484.52 -2.77 -9.02 16 3 C 0.50 7.61 7.83 87.66 0.69 8.29 16 4 O -0.59 -14.91 15.98 -3.02 -0.05 -14.96 16 5 C -0.14 -1.27 5.70 29.85 0.17 -1.10 16 6 C -0.10 -1.33 4.50 30.59 0.14 -1.19 16 7 C -0.09 -1.34 4.50 30.59 0.14 -1.20 16 8 C -0.14 -2.07 4.05 29.85 0.12 -1.95 16 9 C 0.51 11.18 7.70 87.66 0.67 11.86 16 10 O -0.58 -16.84 15.40 -3.05 -0.05 -16.89 16 11 N -0.61 -12.59 2.98 -819.77 -2.44 -15.03 16 12 C 0.11 1.92 6.34 86.36 0.55 2.47 16 13 C -0.13 -3.09 5.25 30.67 0.16 -2.93 16 14 C -0.08 -2.24 1.73 -10.77 -0.02 -2.26 16 15 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 16 C 0.16 5.86 5.41 86.38 0.47 6.33 16 17 N -0.75 -34.40 5.12 -343.45 -1.76 -36.16 16 18 C -0.24 -13.48 10.47 84.03 0.88 -12.60 16 19 H 0.05 3.24 8.06 -2.91 -0.02 3.21 16 20 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 21 N -0.99 -63.52 13.97 21.65 0.30 -63.22 16 22 Si 0.96 44.60 27.74 68.60 1.90 46.51 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 25 H -0.25 -10.12 6.52 99.48 0.65 -9.47 16 26 C -0.09 -2.03 2.40 -10.87 -0.03 -2.06 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 C -0.15 -3.18 8.82 71.98 0.63 -2.55 16 29 C 0.12 2.58 5.68 86.21 0.49 3.07 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.11 0.13 8.14 -2.38 -0.02 0.11 16 33 H 0.42 0.58 8.83 -92.70 -0.82 -0.23 16 34 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 37 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 38 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 39 H 0.07 1.01 8.10 -2.39 -0.02 0.99 16 40 H 0.11 1.27 7.94 -2.39 -0.02 1.25 16 41 H 0.11 1.39 7.69 -2.39 -0.02 1.37 16 42 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 43 H 0.11 1.43 5.93 -2.39 -0.01 1.42 16 44 H 0.07 1.91 7.15 -2.38 -0.02 1.90 16 45 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.03 1.09 6.14 -2.39 -0.01 1.08 16 48 H 0.37 15.61 4.71 -92.71 -0.44 15.18 16 49 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 50 H 0.05 1.36 6.29 -2.39 -0.02 1.34 16 51 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 52 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 53 H 0.08 1.94 7.01 -2.38 -0.02 1.92 16 54 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -81.60 420.53 1.61 -79.99 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -0.43 Total: 26.00 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.90 Total: 2.79 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -6.67 Total: -123.44 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.10 Total: -31.84 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.90 Total: 46.51 kcal Total: -81.60 1.61 -79.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185788790.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.913 kcal (2) G-P(sol) polarization free energy of solvation -81.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds