Wall clock time and date at job start Sat Apr 11 2020 05:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47193 * 2 1 4 4 C 1.52993 * 109.47360 * 239.99507 * 2 1 3 5 5 C 1.53001 * 109.47180 * 68.22745 * 4 2 1 6 6 C 1.53000 * 109.47160 * 53.71149 * 5 4 2 7 7 C 1.53004 * 109.47272 * 173.71437 * 5 4 2 8 8 C 1.53005 * 109.47234 * 293.71170 * 5 4 2 9 9 C 1.50706 * 109.46783 * 119.99694 * 2 1 3 10 10 O 1.21274 * 119.99838 * 108.34477 * 9 2 1 11 11 N 1.34773 * 119.99795 * 288.34689 * 9 2 1 12 12 C 1.47428 * 125.65209 * 356.16290 * 11 9 2 13 13 C 1.54910 * 104.83317 * 155.91975 * 12 11 9 14 14 C 1.55158 * 101.58187 * 37.00900 * 13 12 11 15 15 H 1.08996 * 110.72040 * 82.86314 * 14 13 12 16 16 N 1.46909 * 110.71638 * 205.95956 * 14 13 12 17 17 C 1.46895 * 110.99477 * 271.15770 * 16 14 13 18 18 C 1.50704 * 109.46778 * 180.02562 * 17 16 14 19 19 O 1.21291 * 120.00030 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99986 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99912 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00061 * 0.02562 * 21 20 18 23 23 C 1.38951 * 119.99998 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99903 * 180.02562 * 23 21 20 25 25 Si 1.86805 * 119.99886 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.46968 * 89.99980 * 25 23 21 27 27 H 1.48504 * 109.46714 * 209.99801 * 25 23 21 28 28 H 1.48501 * 109.47121 * 329.99476 * 25 23 21 29 29 C 1.47023 * 125.64863 * 176.21595 * 11 9 2 30 30 H 1.08998 * 109.47134 * 268.10145 * 1 2 3 31 31 H 1.09003 * 109.46846 * 28.09873 * 1 2 3 32 32 H 1.08998 * 109.47344 * 148.09187 * 1 2 3 33 33 H 1.08998 * 109.47617 * 188.22801 * 4 2 1 34 34 H 1.09000 * 109.47373 * 308.22897 * 4 2 1 35 35 H 1.09002 * 109.46628 * 60.00119 * 6 5 4 36 36 H 1.08992 * 109.47223 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.46948 * 300.00244 * 6 5 4 38 38 H 1.08993 * 109.46789 * 60.00104 * 7 5 4 39 39 H 1.09001 * 109.47039 * 179.97438 * 7 5 4 40 40 H 1.08995 * 109.46479 * 299.99756 * 7 5 4 41 41 H 1.09004 * 109.46811 * 84.05805 * 8 5 4 42 42 H 1.08997 * 109.47443 * 204.06164 * 8 5 4 43 43 H 1.09000 * 109.47160 * 324.06402 * 8 5 4 44 44 H 1.08998 * 110.36618 * 37.07400 * 12 11 9 45 45 H 1.09006 * 110.45901 * 274.80463 * 12 11 9 46 46 H 1.09002 * 111.00014 * 278.92960 * 13 12 11 47 47 H 1.08997 * 111.00139 * 155.08800 * 13 12 11 48 48 H 1.00894 * 110.99368 * 147.20106 * 16 14 13 49 49 H 1.09003 * 109.47222 * 299.99761 * 17 16 14 50 50 H 1.08997 * 109.47992 * 60.00438 * 17 16 14 51 51 H 0.97004 * 120.00155 * 0.02562 * 20 18 17 52 52 H 0.96998 * 119.99672 * 180.02562 * 24 23 21 53 53 H 1.09000 * 109.88180 * 61.59404 * 29 11 9 54 54 H 1.08998 * 109.88338 * 300.43212 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.7056 0.1091 -2.4899 6 6 2.2443 1.5302 -2.3129 7 6 2.3502 -0.5311 -3.7210 8 6 0.1878 0.1586 -2.6766 9 6 2.0323 -0.7104 1.2306 10 8 2.5460 -1.8045 1.1319 11 7 1.9105 -0.1298 2.4407 12 6 1.3822 1.2228 2.6956 13 6 0.8760 1.1816 4.1590 14 6 1.9438 0.2798 4.8327 15 1 2.8244 0.8618 5.1043 16 7 1.3850 -0.3950 6.0120 17 6 1.5521 0.4276 7.2175 18 6 0.9689 -0.2957 8.4040 19 8 0.4633 -1.3888 8.2594 20 7 1.0090 0.2719 9.6257 21 6 0.4780 -0.3860 10.7050 22 1 0.0279 -1.3592 10.5763 23 6 0.5199 0.1990 11.9647 24 7 0.0113 -0.4318 12.9993 25 14 1.2991 1.8821 12.1875 26 1 0.2662 2.9336 12.0065 27 1 1.8754 1.9839 13.5523 28 1 2.3751 2.0666 11.1808 29 6 2.2834 -0.7399 3.7253 30 1 -0.3633 -0.0340 1.0271 31 1 -0.3633 0.9066 -0.4840 32 1 -0.3634 -0.8724 -0.5432 33 1 3.1201 -0.8505 -1.1787 34 1 1.5617 -1.6977 -1.3257 35 1 3.3256 1.4948 -2.1799 36 1 2.0065 2.1216 -3.1970 37 1 1.7851 1.9862 -1.4358 38 1 1.9664 -1.5434 -3.8471 39 1 2.1116 0.0603 -4.6050 40 1 3.4315 -0.5663 -3.5880 41 1 -0.2286 0.9536 -2.0579 42 1 -0.0433 0.3542 -3.7237 43 1 -0.2460 -0.7967 -2.3810 44 1 0.5594 1.4431 2.0155 45 1 2.1717 1.9667 2.5880 46 1 -0.1129 0.7269 4.2177 47 1 0.8725 2.1787 4.5994 48 1 1.7982 -1.3070 6.1363 49 1 2.6130 0.6097 7.3890 50 1 1.0373 1.3789 7.0826 51 1 1.4130 1.1462 9.7413 52 1 0.0402 -0.0233 13.8785 53 1 3.3515 -0.9571 3.7363 54 1 1.7150 -1.6572 3.8789 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186111667.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:58 Heat of formation + Delta-G solvation = -98.956965 kcal Electronic energy + Delta-G solvation = -29871.666524 eV Core-core repulsion = 25842.131832 eV Total energy + Delta-G solvation = -4029.534693 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.50589 -40.34774 -39.43047 -38.41013 -36.24288 -35.62236 -33.89731 -33.72665 -31.55245 -30.10155 -28.90393 -28.14439 -27.95897 -27.11377 -25.66377 -24.75870 -23.16534 -21.53405 -21.29055 -20.34121 -20.09476 -19.46521 -18.27393 -17.80716 -17.47606 -16.96042 -16.59428 -16.41713 -16.30930 -15.70130 -15.39141 -15.24491 -15.03975 -14.84087 -14.79063 -14.52732 -14.42272 -14.31993 -13.93059 -13.81374 -13.65004 -13.57087 -13.24532 -13.12096 -12.88344 -12.84013 -12.75304 -12.49686 -12.42215 -12.40618 -12.11693 -12.01920 -11.96818 -11.81484 -11.77696 -11.50544 -11.44371 -11.38668 -11.23261 -10.67954 -10.44032 -10.24614 -9.71845 -9.39500 -8.40707 -6.02189 1.31140 1.37292 1.46180 1.58278 1.88302 1.96547 2.24281 2.73450 3.15597 3.29373 3.40117 3.66127 3.68721 3.70023 3.89899 4.02199 4.12305 4.15138 4.20179 4.32238 4.34925 4.37415 4.40873 4.46057 4.58337 4.64647 4.68075 4.70526 4.74722 4.75704 4.82515 4.86372 4.94038 4.98406 5.00320 5.02411 5.11071 5.16793 5.21776 5.22676 5.29130 5.34162 5.39527 5.44000 5.53418 5.59154 5.61949 5.90375 6.04147 6.26486 6.49652 6.60087 6.88610 7.11242 7.40144 7.97383 8.77034 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033170 B = 0.001713 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.941673 B =16340.481832 C =16575.458170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.123 0.877 4 C -0.085 4.085 5 C -0.066 4.066 6 C -0.145 4.145 7 C -0.142 4.142 8 C -0.151 4.151 9 C 0.521 3.479 10 O -0.593 6.593 11 N -0.615 5.615 12 C 0.096 3.904 13 C -0.120 4.120 14 C 0.080 3.920 15 H 0.085 0.915 16 N -0.677 5.677 17 C 0.065 3.935 18 C 0.447 3.553 19 O -0.617 6.617 20 N -0.589 5.589 21 C -0.331 4.331 22 H 0.052 0.948 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.967 3.033 26 H -0.255 1.255 27 H -0.277 1.277 28 H -0.229 1.229 29 C 0.106 3.894 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.070 0.930 47 H 0.109 0.891 48 H 0.344 0.656 49 H 0.081 0.919 50 H 0.122 0.878 51 H 0.391 0.609 52 H 0.279 0.721 53 H 0.063 0.937 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.038 15.038 -32.913 36.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.141 0.859 4 C -0.123 4.123 5 C -0.066 4.066 6 C -0.202 4.202 7 C -0.200 4.200 8 C -0.208 4.208 9 C 0.312 3.688 10 O -0.474 6.474 11 N -0.349 5.349 12 C -0.025 4.025 13 C -0.159 4.159 14 C -0.030 4.030 15 H 0.103 0.897 16 N -0.310 5.310 17 C -0.067 4.067 18 C 0.235 3.765 19 O -0.502 6.502 20 N -0.231 5.231 21 C -0.460 4.460 22 H 0.071 0.929 23 C -0.215 4.215 24 N -0.576 5.576 25 Si 0.787 3.213 26 H -0.180 1.180 27 H -0.202 1.202 28 H -0.152 1.152 29 C -0.018 4.018 30 H 0.070 0.930 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.120 0.880 45 H 0.114 0.886 46 H 0.088 0.912 47 H 0.127 0.873 48 H 0.163 0.837 49 H 0.098 0.902 50 H 0.140 0.860 51 H 0.227 0.773 52 H 0.088 0.912 53 H 0.082 0.918 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.292 13.896 -33.037 36.229 hybrid contribution 1.190 -0.447 1.275 1.801 sum 6.482 13.449 -31.762 35.096 Atomic orbital electron populations 1.22263 0.91502 1.04454 1.02367 1.21424 0.98599 1.01463 0.90345 0.85927 1.21488 1.00185 0.97970 0.92630 1.20527 0.96572 0.95735 0.93739 1.22009 1.00766 0.94855 1.02592 1.21896 1.00228 1.00514 0.97314 1.22343 0.93958 1.02384 1.02113 1.21244 0.77622 0.85349 0.84562 1.90679 1.46589 1.23417 1.86696 1.48520 1.63154 1.18135 1.05055 1.22719 1.00059 0.82531 0.97241 1.22900 0.98507 1.00975 0.93503 1.22615 0.97377 0.94470 0.88520 0.89708 1.60164 1.62998 1.05811 1.02033 1.21683 1.00722 0.97292 0.87007 1.21044 0.83514 0.87230 0.84751 1.90560 1.50092 1.24061 1.85481 1.42005 1.54692 1.19525 1.06879 1.19005 1.36680 1.03297 0.87040 0.92938 1.26161 0.97557 1.03917 0.93825 1.69814 1.46053 1.41031 1.00695 0.85335 0.79729 0.76798 0.79445 1.17972 1.20224 1.15177 1.21919 0.99722 0.96686 0.83473 0.93021 0.87971 0.91952 0.93281 0.93082 0.93146 0.91752 0.91125 0.93306 0.91576 0.93182 0.90357 0.92554 0.92988 0.88038 0.88575 0.91169 0.87276 0.83714 0.90160 0.86028 0.77332 0.91160 0.91824 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 7.15 71.98 0.51 -1.13 16 2 C -0.10 -1.36 1.72 -11.54 -0.02 -1.38 16 3 H 0.12 1.10 5.63 -2.38 -0.01 1.08 16 4 C -0.08 -1.34 3.14 30.59 0.10 -1.24 16 5 C -0.07 -0.68 0.80 -52.18 -0.04 -0.72 16 6 C -0.15 -1.10 7.84 71.98 0.56 -0.54 16 7 C -0.14 -1.55 8.35 71.98 0.60 -0.95 16 8 C -0.15 -1.28 7.31 71.98 0.53 -0.75 16 9 C 0.52 11.95 6.90 87.66 0.60 12.55 16 10 O -0.59 -19.48 16.35 -3.01 -0.05 -19.53 16 11 N -0.62 -12.02 3.27 -811.79 -2.65 -14.67 16 12 C 0.10 1.07 6.35 86.85 0.55 1.62 16 13 C -0.12 -1.73 6.75 31.99 0.22 -1.52 16 14 C 0.08 1.52 3.25 46.10 0.15 1.67 16 15 H 0.09 1.26 7.86 -2.39 -0.02 1.24 16 16 N -0.68 -18.78 5.95 -489.44 -2.91 -21.69 16 17 C 0.07 1.81 6.04 85.56 0.52 2.33 16 18 C 0.45 19.64 7.82 87.66 0.69 20.33 16 19 O -0.62 -34.22 15.78 -3.06 -0.05 -34.26 16 20 N -0.59 -27.12 5.09 -306.98 -1.56 -28.68 16 21 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 22 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 23 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 24 N -0.94 -56.29 13.96 21.66 0.30 -55.99 16 25 Si 0.97 37.86 27.74 68.60 1.90 39.76 16 26 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 27 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 28 H -0.23 -7.37 6.52 99.48 0.65 -6.72 16 29 C 0.11 2.40 6.39 86.73 0.55 2.96 16 30 H 0.05 0.67 6.58 -2.39 -0.02 0.66 16 31 H 0.10 0.56 5.87 -2.39 -0.01 0.55 16 32 H 0.06 0.81 6.01 -2.39 -0.01 0.79 16 33 H 0.05 0.95 8.02 -2.39 -0.02 0.93 16 34 H 0.05 1.00 7.75 -2.39 -0.02 0.98 16 35 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.07 0.37 6.13 -2.39 -0.01 0.35 16 38 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 0.57 8.12 -2.39 -0.02 0.55 16 40 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.08 0.45 5.30 -2.39 -0.01 0.44 16 42 H 0.06 0.43 7.91 -2.39 -0.02 0.41 16 43 H 0.05 0.54 6.36 -2.39 -0.02 0.52 16 44 H 0.10 0.76 6.00 -2.39 -0.01 0.74 16 45 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.34 10.78 8.09 -89.70 -0.73 10.05 16 49 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 50 H 0.12 2.67 8.14 -2.39 -0.02 2.65 16 51 H 0.39 14.57 5.76 -92.71 -0.53 14.03 16 52 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 53 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 54 H 0.05 1.45 7.95 -2.39 -0.02 1.43 16 Total: -1.00 -83.97 410.73 1.41 -82.56 By element: Atomic # 1 Polarization: 38.57 SS G_CDS: -0.41 Total: 38.16 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.84 Total: 14.35 kcal Atomic # 7 Polarization: -114.21 SS G_CDS: -6.82 Total: -121.04 kcal Atomic # 8 Polarization: -53.70 SS G_CDS: -0.10 Total: -53.80 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.90 Total: 39.76 kcal Total: -83.97 1.41 -82.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186111667.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.394 kcal (2) G-P(sol) polarization free energy of solvation -83.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds