Wall clock time and date at job start Sat Apr 11 2020 05:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47211 * 2 1 4 4 C 1.52996 * 109.47293 * 119.99744 * 2 1 3 5 5 C 1.53008 * 109.47024 * 186.58503 * 4 2 1 6 6 C 1.52991 * 109.46937 * 53.78259 * 5 4 2 7 7 C 1.53001 * 109.46934 * 173.78478 * 5 4 2 8 8 C 1.52997 * 109.46902 * 293.77848 * 5 4 2 9 9 C 1.50701 * 109.46909 * 239.99903 * 2 1 3 10 10 O 1.21285 * 119.99937 * 278.85790 * 9 2 1 11 11 N 1.34777 * 119.99737 * 98.85830 * 9 2 1 12 12 C 1.47425 * 125.65408 * 359.97418 * 11 9 2 13 13 C 1.54901 * 104.83443 * 155.90884 * 12 11 9 14 14 C 1.55164 * 101.58240 * 37.00999 * 13 12 11 15 15 H 1.09000 * 110.71604 * 82.86535 * 14 13 12 16 16 N 1.46901 * 110.71764 * 206.13310 * 14 13 12 17 17 C 1.46898 * 111.00275 * 273.54751 * 16 14 13 18 18 C 1.50698 * 109.47224 * 180.02562 * 17 16 14 19 19 O 1.21299 * 120.00012 * 0.02562 * 18 17 16 20 20 N 1.34775 * 120.00494 * 179.97438 * 18 17 16 21 21 C 1.37090 * 120.00636 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99649 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00377 * 180.02562 * 21 20 18 24 24 N 1.31402 * 119.99989 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99525 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47056 * 90.00427 * 25 23 21 27 27 H 1.48506 * 109.46704 * 210.00312 * 25 23 21 28 28 H 1.48503 * 109.47373 * 330.00112 * 25 23 21 29 29 C 1.47023 * 125.64472 * 180.02562 * 11 9 2 30 30 H 1.09002 * 109.47000 * 303.28158 * 1 2 3 31 31 H 1.08997 * 109.47632 * 63.27941 * 1 2 3 32 32 H 1.08995 * 109.47095 * 183.28571 * 1 2 3 33 33 H 1.08996 * 109.47431 * 306.58798 * 4 2 1 34 34 H 1.09005 * 109.46936 * 66.59141 * 4 2 1 35 35 H 1.08996 * 109.47513 * 52.93900 * 6 5 4 36 36 H 1.09002 * 109.47030 * 172.93841 * 6 5 4 37 37 H 1.09008 * 109.47128 * 292.93605 * 6 5 4 38 38 H 1.08995 * 109.47512 * 59.99586 * 7 5 4 39 39 H 1.08993 * 109.47310 * 180.02562 * 7 5 4 40 40 H 1.09002 * 109.46796 * 299.99646 * 7 5 4 41 41 H 1.09003 * 109.47096 * 69.56937 * 8 5 4 42 42 H 1.09002 * 109.47028 * 189.56352 * 8 5 4 43 43 H 1.08997 * 109.47424 * 309.56824 * 8 5 4 44 44 H 1.08998 * 110.36207 * 37.06663 * 12 11 9 45 45 H 1.08996 * 110.45697 * 274.79757 * 12 11 9 46 46 H 1.09001 * 111.00673 * 155.08573 * 13 12 11 47 47 H 1.09003 * 111.00420 * 278.93898 * 13 12 11 48 48 H 1.00900 * 110.99638 * 149.58876 * 16 14 13 49 49 H 1.09008 * 109.47007 * 299.99906 * 17 16 14 50 50 H 1.08993 * 109.47156 * 60.00486 * 17 16 14 51 51 H 0.97007 * 119.99073 * 0.02562 * 20 18 17 52 52 H 0.97006 * 119.99827 * 180.02562 * 24 23 21 53 53 H 1.09002 * 109.88193 * 300.44021 * 29 11 9 54 54 H 1.09009 * 109.88619 * 61.45196 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5611 -0.5794 1.3346 6 6 3.9404 0.9007 1.2583 7 6 4.0542 -1.1648 2.6595 8 6 4.2095 -1.3328 0.1715 9 6 2.0323 -0.7104 -1.2305 10 8 2.0819 -1.9221 -1.2534 11 7 2.4263 0.0006 -2.3054 12 6 2.4182 1.4709 -2.4132 13 6 3.4826 1.7954 -3.4908 14 6 3.2823 0.6246 -4.4891 15 1 2.4591 0.8363 -5.1715 16 7 4.5206 0.3584 -5.2332 17 6 4.6145 1.2151 -6.4228 18 6 5.8944 0.9137 -7.1591 19 8 6.6535 0.0681 -6.7348 20 7 6.1952 1.5830 -8.2896 21 6 7.3598 1.3093 -8.9591 22 1 8.0364 0.5575 -8.5804 23 6 7.6701 1.9997 -10.1244 24 7 8.7861 1.7369 -10.7663 25 14 6.5001 3.3004 -10.7789 26 1 6.8526 4.6208 -10.1979 27 1 6.6099 3.3654 -12.2584 28 1 5.1076 2.9491 -10.4008 29 6 2.9345 -0.5616 -3.5653 30 1 -0.3633 0.5639 0.8591 31 1 -0.3634 0.4621 -0.9179 32 1 -0.3633 -1.0259 0.0589 33 1 1.5837 -0.2800 2.1353 34 1 1.7762 -1.7773 1.1922 35 1 3.3808 1.4584 2.0092 36 1 5.0087 1.0121 1.4444 37 1 3.7021 1.2863 0.2669 38 1 3.7839 -2.2192 2.7139 39 1 5.1377 -1.0634 2.7205 40 1 3.5922 -0.6280 3.4881 41 1 3.9952 -0.8133 -0.7624 42 1 5.2880 -1.3769 0.3234 43 1 3.8075 -2.3449 0.1249 44 1 2.6933 1.9226 -1.4601 45 1 1.4372 1.8242 -2.7305 46 1 3.2771 2.7542 -3.9668 47 1 4.4863 1.7791 -3.0660 48 1 4.5897 -0.6166 -5.4833 49 1 3.7649 1.0217 -7.0778 50 1 4.6080 2.2616 -6.1184 51 1 5.5879 2.2590 -8.6291 52 1 9.0030 2.2192 -11.5796 53 1 3.8278 -1.1556 -3.3725 54 1 2.1689 -1.1837 -4.0292 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186111668.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:01 Heat of formation + Delta-G solvation = -99.587613 kcal Electronic energy + Delta-G solvation = -30695.339332 eV Core-core repulsion = 26665.777292 eV Total energy + Delta-G solvation = -4029.562040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73493 -40.36048 -39.28989 -37.91748 -36.23032 -35.59496 -34.26490 -33.74656 -31.58284 -30.15888 -28.31458 -28.19060 -27.89745 -27.51187 -25.71455 -24.73009 -23.24965 -21.52348 -21.29385 -20.34976 -20.14418 -19.34653 -18.43901 -17.75017 -17.52614 -16.97076 -16.67125 -16.52264 -16.13264 -15.64484 -15.42522 -15.26034 -15.01099 -14.82529 -14.75858 -14.53938 -14.32568 -14.12641 -13.95562 -13.79488 -13.58391 -13.44168 -13.27948 -13.06072 -12.99078 -12.86526 -12.68396 -12.61942 -12.45989 -12.41107 -12.39535 -12.16766 -12.02149 -11.96822 -11.78375 -11.51745 -11.50876 -11.35528 -11.19709 -10.66963 -10.44362 -10.25075 -9.65492 -9.39383 -8.41015 -6.02405 1.30744 1.36994 1.45864 1.68253 1.92191 1.96330 2.23990 2.73597 3.15205 3.31190 3.40944 3.60750 3.68628 3.80007 3.84075 3.97879 4.12946 4.14232 4.20947 4.23952 4.31993 4.36470 4.42815 4.45942 4.58444 4.63212 4.67075 4.70715 4.76212 4.76347 4.82210 4.83927 4.89118 4.91729 4.97823 5.02762 5.05663 5.07508 5.15727 5.21771 5.25175 5.29985 5.32808 5.40065 5.45733 5.53122 5.55600 5.90176 6.04207 6.26849 6.54427 6.59758 6.88332 7.21268 7.39772 7.97056 8.76735 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021672 B = 0.002065 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.659239 B =13555.474807 C =14015.929823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 H 0.115 0.885 4 C -0.092 4.092 5 C -0.072 4.072 6 C -0.142 4.142 7 C -0.137 4.137 8 C -0.143 4.143 9 C 0.535 3.465 10 O -0.586 6.586 11 N -0.619 5.619 12 C 0.098 3.902 13 C -0.121 4.121 14 C 0.080 3.920 15 H 0.084 0.916 16 N -0.677 5.677 17 C 0.065 3.935 18 C 0.447 3.553 19 O -0.617 6.617 20 N -0.590 5.590 21 C -0.330 4.330 22 H 0.052 0.948 23 C -0.018 4.018 24 N -0.935 5.935 25 Si 0.968 3.032 26 H -0.255 1.255 27 H -0.277 1.277 28 H -0.228 1.228 29 C 0.109 3.891 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.109 0.891 47 H 0.068 0.932 48 H 0.343 0.657 49 H 0.081 0.919 50 H 0.121 0.879 51 H 0.391 0.609 52 H 0.279 0.721 53 H 0.048 0.952 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.503 6.864 24.439 34.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 H 0.133 0.867 4 C -0.130 4.130 5 C -0.072 4.072 6 C -0.199 4.199 7 C -0.195 4.195 8 C -0.200 4.200 9 C 0.326 3.674 10 O -0.466 6.466 11 N -0.353 5.353 12 C -0.024 4.024 13 C -0.159 4.159 14 C -0.030 4.030 15 H 0.102 0.898 16 N -0.310 5.310 17 C -0.067 4.067 18 C 0.235 3.765 19 O -0.502 6.502 20 N -0.231 5.231 21 C -0.459 4.459 22 H 0.070 0.930 23 C -0.216 4.216 24 N -0.576 5.576 25 Si 0.787 3.213 26 H -0.180 1.180 27 H -0.202 1.202 28 H -0.152 1.152 29 C -0.015 4.015 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.127 0.873 47 H 0.087 0.913 48 H 0.163 0.837 49 H 0.099 0.901 50 H 0.139 0.861 51 H 0.227 0.773 52 H 0.088 0.912 53 H 0.067 0.933 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -22.478 6.058 24.997 34.158 hybrid contribution -0.008 -0.611 -1.734 1.838 sum -22.486 5.447 23.263 32.809 Atomic orbital electron populations 1.21712 0.91344 1.02499 1.03878 1.21518 0.98458 1.01384 0.91359 0.86740 1.21617 0.94247 1.00481 0.96646 1.20608 0.95184 0.96303 0.95123 1.21970 1.01619 0.94107 1.02226 1.21829 1.00958 1.00517 0.96161 1.22199 0.99497 0.99997 0.98338 1.20801 0.75594 0.87061 0.83902 1.90694 1.56918 1.16091 1.82883 1.48600 1.64014 1.08832 1.13827 1.22653 1.00518 0.78436 1.00778 1.22898 0.99253 0.98537 0.95228 1.22606 0.90631 0.95006 0.94714 0.89802 1.60154 1.36772 1.10201 1.23907 1.21672 0.93226 1.00464 0.91324 1.21047 0.89970 0.83564 0.81951 1.90563 1.53880 1.37125 1.68633 1.42008 1.20299 1.37230 1.23599 1.18991 0.98221 1.21744 1.06928 0.92954 1.26179 0.98831 1.00750 0.95876 1.69814 1.25701 1.43326 1.18766 0.85328 0.79405 0.78170 0.78363 1.17965 1.20213 1.15156 1.21857 0.98390 0.96210 0.85040 0.88781 0.91753 0.93469 0.88397 0.92871 0.90362 0.93076 0.92638 0.93502 0.92934 0.90834 0.93353 0.94087 0.94039 0.88543 0.88538 0.87313 0.91304 0.83741 0.90143 0.86085 0.77333 0.91155 0.93312 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.17 71.98 0.66 -0.77 16 2 C -0.11 -1.45 2.13 -11.54 -0.02 -1.47 16 3 H 0.11 1.05 4.32 -2.38 -0.01 1.04 16 4 C -0.09 -1.33 3.81 30.60 0.12 -1.22 16 5 C -0.07 -1.16 0.80 -52.18 -0.04 -1.20 16 6 C -0.14 -1.77 7.71 71.98 0.55 -1.21 16 7 C -0.14 -1.96 8.46 71.98 0.61 -1.35 16 8 C -0.14 -3.38 6.86 71.98 0.49 -2.89 16 9 C 0.53 11.62 3.85 87.66 0.34 11.96 16 10 O -0.59 -18.06 14.33 -3.04 -0.04 -18.10 16 11 N -0.62 -11.79 2.92 -811.80 -2.37 -14.17 16 12 C 0.10 1.10 6.61 86.85 0.57 1.68 16 13 C -0.12 -1.76 6.71 31.99 0.21 -1.55 16 14 C 0.08 1.53 3.24 46.11 0.15 1.68 16 15 H 0.08 1.25 7.90 -2.39 -0.02 1.23 16 16 N -0.68 -18.92 5.93 -489.44 -2.90 -21.82 16 17 C 0.07 1.83 6.03 85.56 0.52 2.34 16 18 C 0.45 19.73 7.82 87.66 0.69 20.41 16 19 O -0.62 -34.35 15.78 -3.09 -0.05 -34.40 16 20 N -0.59 -27.23 5.09 -306.98 -1.56 -28.79 16 21 C -0.33 -19.26 10.16 84.04 0.85 -18.41 16 22 H 0.05 3.68 7.39 -2.91 -0.02 3.65 16 23 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 24 N -0.94 -56.44 13.96 21.66 0.30 -56.14 16 25 Si 0.97 37.97 27.73 68.60 1.90 39.88 16 26 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 27 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 28 H -0.23 -7.38 6.52 99.48 0.65 -6.73 16 29 C 0.11 2.45 6.39 86.73 0.55 3.01 16 30 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 1.04 7.60 -2.38 -0.02 1.02 16 35 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 0.68 5.57 -2.38 -0.01 0.66 16 38 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.05 1.24 4.91 -2.39 -0.01 1.23 16 42 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 43 H 0.04 1.17 7.02 -2.39 -0.02 1.15 16 44 H 0.10 0.76 5.71 -2.39 -0.01 0.74 16 45 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.34 10.84 8.15 -89.69 -0.73 10.11 16 49 H 0.08 1.78 8.09 -2.38 -0.02 1.76 16 50 H 0.12 2.68 8.13 -2.39 -0.02 2.66 16 51 H 0.39 14.62 5.76 -92.70 -0.53 14.09 16 52 H 0.28 15.35 8.31 -92.70 -0.77 14.58 16 53 H 0.05 1.40 7.97 -2.39 -0.02 1.38 16 54 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -83.44 412.51 1.57 -81.87 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: -0.43 Total: 41.20 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.72 Total: 10.48 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -6.53 Total: -120.92 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.09 Total: -52.50 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 1.90 Total: 39.88 kcal Total: -83.44 1.57 -81.87 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186111668.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.720 kcal (2) G-P(sol) polarization free energy of solvation -83.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds