Wall clock time and date at job start Sat Apr 11 2020 05:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47203 * 2 1 4 4 C 1.53000 * 109.47219 * 120.00011 * 2 1 3 5 5 C 1.53000 * 109.46870 * 66.33681 * 4 2 1 6 6 H 1.09001 * 109.47311 * 304.90778 * 5 4 2 7 7 C 1.52997 * 109.47035 * 64.91268 * 5 4 2 8 8 C 1.50705 * 109.47113 * 184.91154 * 5 4 2 9 9 O 1.21281 * 119.99795 * 353.76505 * 8 5 4 10 10 N 1.34773 * 119.99992 * 173.76277 * 8 5 4 11 11 C 1.47611 * 118.74786 * 356.47698 * 10 8 5 12 12 C 1.53798 * 111.25394 * 138.34566 * 11 10 8 13 13 C 1.51170 * 109.65793 * 319.84604 * 12 11 10 14 14 N 1.46205 * 109.04303 * 92.49503 * 13 12 11 15 15 C 1.46901 * 110.99892 * 144.77453 * 14 13 12 16 16 C 1.50707 * 109.46758 * 197.08415 * 15 14 13 17 17 O 1.21289 * 120.00024 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99449 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99578 * 179.97438 * 18 16 15 20 20 H 1.08009 * 120.00247 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00053 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00349 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99810 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47319 * 90.00043 * 23 21 19 25 25 H 1.48502 * 109.47126 * 209.99848 * 23 21 19 26 26 H 1.48495 * 109.47091 * 329.99589 * 23 21 19 27 27 C 1.41441 * 116.34347 * 272.98209 * 14 13 12 28 28 C 1.44884 * 118.74590 * 176.45300 * 10 8 5 29 29 H 1.09000 * 109.47023 * 300.00312 * 1 2 3 30 30 H 1.09002 * 109.46860 * 59.99796 * 1 2 3 31 31 H 1.08997 * 109.46819 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47405 * 240.00560 * 2 1 3 33 33 H 1.09001 * 109.47199 * 184.66057 * 3 2 1 34 34 H 1.09000 * 109.47164 * 304.66795 * 3 2 1 35 35 H 1.09006 * 109.46897 * 64.66444 * 3 2 1 36 36 H 1.09000 * 109.47404 * 306.33477 * 4 2 1 37 37 H 1.08998 * 109.47117 * 186.33825 * 4 2 1 38 38 H 1.08998 * 109.47252 * 56.64228 * 7 5 4 39 39 H 1.09008 * 109.46947 * 176.64124 * 7 5 4 40 40 H 1.08998 * 109.46812 * 296.63707 * 7 5 4 41 41 H 1.08992 * 109.11239 * 258.78187 * 11 10 8 42 42 H 1.09001 * 109.10968 * 17.90978 * 11 10 8 43 43 H 1.09006 * 109.44211 * 79.97611 * 12 11 10 44 44 H 1.08994 * 109.44775 * 199.87991 * 12 11 10 45 45 H 1.09001 * 109.55508 * 332.63298 * 13 12 11 46 46 H 1.08994 * 109.63145 * 212.40243 * 13 12 11 47 47 H 1.09001 * 109.47419 * 317.08012 * 15 14 13 48 48 H 1.08997 * 109.46799 * 77.08507 * 15 14 13 49 49 H 0.96996 * 119.99885 * 359.97438 * 18 16 15 50 50 H 0.96996 * 120.00128 * 180.02562 * 22 21 19 51 51 H 1.08999 * 109.38170 * 303.31920 * 27 14 13 52 52 H 1.09009 * 109.38017 * 183.63923 * 27 14 13 53 53 H 1.09004 * 109.43652 * 29.79344 * 28 10 8 54 54 H 1.09000 * 109.43439 * 149.66072 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6641 -2.2024 1.1721 6 1 0.5881 -2.2971 1.0260 7 6 2.3976 -2.8542 -0.0017 8 6 2.0591 -2.8883 2.4546 9 8 2.6893 -2.2839 3.2963 10 7 1.7120 -4.1733 2.6661 11 6 0.8782 -4.8584 1.6590 12 6 1.3665 -6.2964 1.4158 13 6 2.8779 -6.3244 1.3996 14 7 3.3640 -6.6193 2.7466 15 6 4.5793 -7.4432 2.6990 16 6 4.8132 -8.0716 4.0487 17 8 4.0431 -7.8548 4.9603 18 7 5.8783 -8.8744 4.2426 19 6 6.0915 -9.4456 5.4705 20 1 5.4062 -9.2520 6.2826 21 6 7.1892 -10.2737 5.6704 22 7 7.3938 -10.8209 6.8476 23 14 8.3748 -10.6081 4.2662 24 1 9.4550 -9.5890 4.2771 25 1 8.9679 -11.9596 4.4303 26 1 7.6443 -10.5415 2.9751 27 6 3.5362 -5.5111 3.6084 28 6 2.1720 -4.8297 3.8730 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 3.1268 1.4437 -0.0835 34 1 1.6100 1.9800 -0.8452 35 1 1.7465 1.9317 0.9289 36 1 1.5871 -0.2771 2.1356 37 1 3.1241 -0.6240 1.3078 38 1 3.4714 -2.7075 0.1142 39 1 2.1766 -3.9215 -0.0207 40 1 2.0672 -2.3981 -0.9349 41 1 -0.1535 -4.8863 2.0091 42 1 0.9222 -4.3033 0.7219 43 1 0.9992 -6.9439 2.2121 44 1 0.9883 -6.6509 0.4570 45 1 3.2573 -5.3539 1.0797 46 1 3.2225 -7.0956 0.7109 47 1 4.4587 -8.2258 1.9499 48 1 5.4323 -6.8174 2.4367 49 1 6.4940 -9.0480 3.5135 50 1 8.1603 -11.3987 6.9872 51 1 4.2147 -4.7947 3.1452 52 1 3.9606 -5.8502 4.5534 53 1 2.2832 -4.0916 4.6674 54 1 1.4438 -5.5817 4.1769 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197596848.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:24 Heat of formation + Delta-G solvation = -85.947216 kcal Electronic energy + Delta-G solvation = -31219.307563 eV Core-core repulsion = 27190.337015 eV Total energy + Delta-G solvation = -4028.970548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.80056 -40.54949 -38.97492 -37.79805 -36.45114 -35.79919 -34.03870 -33.73529 -33.20822 -30.58477 -28.21848 -27.97698 -27.69825 -26.94758 -25.82846 -24.61091 -22.78216 -21.63776 -21.28256 -20.59467 -20.27033 -19.56944 -18.30635 -17.90259 -17.25178 -16.88824 -16.79677 -16.52820 -16.33308 -16.01109 -15.70570 -15.41399 -15.17979 -14.91908 -14.72272 -14.62810 -14.37518 -14.22442 -14.05110 -13.86376 -13.55304 -13.28745 -13.16368 -13.10500 -12.95395 -12.81868 -12.66826 -12.52241 -12.43512 -12.39548 -12.27983 -12.21191 -11.98319 -11.79884 -11.63656 -11.51413 -11.47196 -11.39576 -11.36270 -10.61099 -10.36450 -10.22840 -9.64227 -9.08369 -8.41087 -6.01522 1.28942 1.34876 1.43589 1.61209 1.96293 2.03975 2.22654 2.62275 3.14966 3.20567 3.45315 3.74824 3.86923 3.91640 3.97430 4.11771 4.12964 4.15207 4.20866 4.25543 4.31319 4.33357 4.39594 4.43889 4.48789 4.54608 4.62223 4.72354 4.76123 4.81345 4.82577 4.88331 4.91527 4.92501 5.01743 5.02605 5.07750 5.13171 5.15107 5.21736 5.27892 5.35198 5.37825 5.51032 5.53857 5.58527 5.67319 5.92115 6.10300 6.35614 6.54245 6.60557 6.89152 7.18872 7.40604 7.98119 8.76628 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.002257 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.968518 B =12404.294150 C =12545.236887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.091 4.091 5 C -0.102 4.102 6 H 0.122 0.878 7 C -0.152 4.152 8 C 0.501 3.499 9 O -0.592 6.592 10 N -0.602 5.602 11 C 0.089 3.911 12 C -0.128 4.128 13 C 0.068 3.932 14 N -0.553 5.553 15 C 0.062 3.938 16 C 0.449 3.551 17 O -0.603 6.603 18 N -0.593 5.593 19 C -0.325 4.325 20 H 0.055 0.945 21 C -0.018 4.018 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.229 1.229 27 C 0.076 3.924 28 C 0.130 3.870 29 H 0.045 0.955 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.122 0.878 43 H 0.062 0.938 44 H 0.118 0.882 45 H 0.043 0.957 46 H 0.095 0.905 47 H 0.127 0.873 48 H 0.067 0.933 49 H 0.389 0.611 50 H 0.278 0.722 51 H 0.004 0.996 52 H 0.063 0.937 53 H 0.062 0.938 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.763 17.405 -26.319 34.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.129 4.129 5 C -0.123 4.123 6 H 0.139 0.861 7 C -0.208 4.208 8 C 0.291 3.709 9 O -0.473 6.473 10 N -0.334 5.334 11 C -0.031 4.031 12 C -0.167 4.167 13 C -0.058 4.058 14 N -0.278 5.278 15 C -0.068 4.068 16 C 0.237 3.763 17 O -0.487 6.487 18 N -0.235 5.235 19 C -0.454 4.454 20 H 0.073 0.927 21 C -0.216 4.216 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.185 1.185 25 H -0.200 1.200 26 H -0.152 1.152 27 C -0.055 4.055 28 C 0.006 3.994 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.097 0.903 42 H 0.139 0.861 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.061 0.939 46 H 0.113 0.887 47 H 0.145 0.855 48 H 0.085 0.915 49 H 0.224 0.776 50 H 0.088 0.912 51 H 0.022 0.978 52 H 0.082 0.918 53 H 0.081 0.919 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.214 17.482 -24.938 33.609 hybrid contribution 1.749 -0.082 0.606 1.853 sum -12.465 17.400 -24.332 32.407 Atomic orbital electron populations 1.21915 0.94400 1.02476 1.01880 1.21169 0.96519 0.95957 0.97455 1.21853 1.00860 0.96156 1.01825 1.21409 1.00440 0.92762 0.98328 1.21411 1.03611 0.95708 0.91601 0.86058 1.22105 0.99819 1.01817 0.97092 1.21622 0.78245 0.81681 0.89329 1.90674 1.42456 1.65919 1.48204 1.48019 1.51851 1.11606 1.21883 1.22637 0.93887 0.94318 0.92275 1.21886 0.94722 0.95737 1.04336 1.21767 0.96383 1.00905 0.86779 1.57779 1.32562 1.22984 1.14484 1.21831 0.92841 0.98109 0.94067 1.21008 0.81751 0.82024 0.91558 1.90515 1.47734 1.64171 1.46319 1.42055 1.25240 1.44750 1.11489 1.18981 1.10673 1.26663 0.89096 0.92732 1.26127 0.99343 0.95693 1.00447 1.69808 1.30570 1.32503 1.24763 0.85364 0.78544 0.78819 0.78789 1.18531 1.19954 1.15197 1.21460 0.96629 0.90166 0.97205 1.21216 0.95199 0.95757 0.87229 0.93614 0.91643 0.91466 0.89392 0.93144 0.91441 0.93588 0.93449 0.93386 0.93663 0.89903 0.88408 0.90331 0.86069 0.91879 0.86359 0.93881 0.88652 0.85519 0.91465 0.77599 0.91214 0.97764 0.91842 0.91922 0.89935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.98 71.98 0.65 -0.66 16 2 C -0.09 -1.01 2.79 -10.79 -0.03 -1.04 16 3 C -0.15 -1.75 9.19 71.98 0.66 -1.09 16 4 C -0.09 -1.56 3.44 30.59 0.11 -1.46 16 5 C -0.10 -1.53 1.75 -11.54 -0.02 -1.55 16 6 H 0.12 1.21 5.84 -2.39 -0.01 1.19 16 7 C -0.15 -1.57 8.37 71.98 0.60 -0.97 16 8 C 0.50 12.53 6.94 87.66 0.61 13.14 16 9 O -0.59 -20.95 15.40 -3.03 -0.05 -20.99 16 10 N -0.60 -13.76 2.18 -817.91 -1.79 -15.55 16 11 C 0.09 1.19 5.33 86.44 0.46 1.65 16 12 C -0.13 -1.83 5.77 30.27 0.17 -1.66 16 13 C 0.07 1.28 5.32 85.84 0.46 1.73 16 14 N -0.55 -16.42 3.60 -916.38 -3.30 -19.72 16 15 C 0.06 1.92 5.44 85.56 0.47 2.39 16 16 C 0.45 20.47 7.37 87.66 0.65 21.11 16 17 O -0.60 -33.48 13.97 -3.06 -0.04 -33.53 16 18 N -0.59 -28.30 5.09 -306.97 -1.56 -29.86 16 19 C -0.32 -19.26 10.16 84.04 0.85 -18.40 16 20 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 21 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 22 N -0.94 -57.17 13.96 21.66 0.30 -56.87 16 23 Si 0.96 39.24 27.74 68.60 1.90 41.15 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 27 C 0.08 2.63 5.01 87.90 0.44 3.07 16 28 C 0.13 4.01 5.54 87.29 0.48 4.50 16 29 H 0.04 0.49 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.07 0.44 6.51 -2.39 -0.02 0.42 16 32 H 0.09 0.72 6.36 -2.39 -0.02 0.71 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.04 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.05 1.01 8.05 -2.39 -0.02 0.99 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.08 0.68 4.30 -2.38 -0.01 0.67 16 40 H 0.10 0.52 6.59 -2.39 -0.02 0.51 16 41 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.12 0.90 3.82 -2.39 -0.01 0.89 16 43 H 0.06 1.26 7.98 -2.38 -0.02 1.24 16 44 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.04 0.80 6.25 -2.39 -0.01 0.79 16 46 H 0.10 1.37 7.36 -2.39 -0.02 1.36 16 47 H 0.13 3.02 7.57 -2.39 -0.02 3.01 16 48 H 0.07 1.87 8.11 -2.39 -0.02 1.85 16 49 H 0.39 15.34 5.76 -92.71 -0.53 14.80 16 50 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 51 H 0.00 0.16 8.12 -2.39 -0.02 0.14 16 52 H 0.06 2.80 5.62 -2.38 -0.01 2.78 16 53 H 0.06 2.19 7.24 -2.38 -0.02 2.17 16 54 H 0.08 2.55 8.11 -2.39 -0.02 2.53 16 Total: -1.00 -84.19 402.13 2.80 -81.39 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.30 Total: 33.76 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 7.02 Total: 20.22 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -6.35 Total: -122.00 kcal Atomic # 8 Polarization: -54.43 SS G_CDS: -0.09 Total: -54.52 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.90 Total: 41.15 kcal Total: -84.19 2.80 -81.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197596848.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.555 kcal (2) G-P(sol) polarization free energy of solvation -84.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds