Wall clock time and date at job start Sat Apr 11 2020 05:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47133 * 2 1 4 4 C 1.52998 * 109.47249 * 120.00076 * 2 1 3 5 5 H 1.09001 * 109.46892 * 299.99900 * 4 2 1 6 6 C 1.52999 * 109.47249 * 180.02562 * 4 2 1 7 7 C 1.52999 * 109.47404 * 59.99787 * 4 2 1 8 8 C 1.50696 * 109.47219 * 185.00113 * 7 4 2 9 9 O 1.21281 * 120.00466 * 0.02562 * 8 7 4 10 10 N 1.34778 * 119.99737 * 179.97438 * 8 7 4 11 11 C 1.46505 * 119.99909 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.64360 * 31.84793 * 11 10 8 13 13 C 1.54933 * 110.87436 * 268.59109 * 11 10 8 14 14 N 1.48534 * 103.22824 * 204.15452 * 13 11 10 15 15 C 1.46901 * 111.00172 * 159.71827 * 14 13 11 16 16 C 1.50701 * 109.46921 * 52.60615 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47117 * 59.99412 * 23 21 19 25 25 H 1.48498 * 109.47600 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47088 * 299.99811 * 23 21 19 27 27 C 1.47912 * 105.81750 * 39.20906 * 14 13 11 28 28 C 1.53995 * 107.05535 * 334.66922 * 27 14 13 29 29 H 1.08997 * 110.30497 * 120.14229 * 28 27 14 30 30 C 1.53004 * 110.30707 * 242.21116 * 28 27 14 31 31 H 1.09001 * 109.47092 * 300.00146 * 1 2 3 32 32 H 1.09002 * 109.46971 * 59.99988 * 1 2 3 33 33 H 1.08994 * 109.47222 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47092 * 239.99854 * 2 1 3 35 35 H 1.09001 * 109.47251 * 59.99951 * 3 2 1 36 36 H 1.08998 * 109.47046 * 180.02562 * 3 2 1 37 37 H 1.09002 * 109.47202 * 299.99870 * 3 2 1 38 38 H 1.09001 * 109.47092 * 299.99778 * 6 4 2 39 39 H 1.09008 * 109.47168 * 60.00071 * 6 4 2 40 40 H 1.09002 * 109.46971 * 179.97438 * 6 4 2 41 41 H 1.08996 * 109.46713 * 64.99966 * 7 4 2 42 42 H 1.08998 * 109.46790 * 305.00634 * 7 4 2 43 43 H 0.96999 * 120.00543 * 0.02562 * 10 8 7 44 44 H 1.08997 * 110.67236 * 85.72169 * 13 11 10 45 45 H 1.09001 * 110.67169 * 322.59313 * 13 11 10 46 46 H 1.09002 * 109.47401 * 292.60643 * 15 14 13 47 47 H 1.09001 * 109.46874 * 172.60656 * 15 14 13 48 48 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 49 49 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 50 50 H 1.08997 * 109.91505 * 94.02357 * 27 14 13 51 51 H 1.08999 * 109.91449 * 215.12087 * 27 14 13 52 52 H 1.08992 * 109.47205 * 58.54967 * 30 28 27 53 53 H 1.09001 * 109.46768 * 178.54594 * 30 28 27 54 54 H 1.08999 * 109.46969 * 298.54345 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7207 1.2495 7 6 1.5300 -2.1637 1.2493 8 6 1.9287 -2.8374 2.5370 9 8 2.5584 -2.2242 3.3726 10 7 1.5847 -4.1213 2.7604 11 6 1.9718 -4.7761 4.0125 12 1 2.0010 -4.0556 4.8299 13 6 3.3383 -5.4906 3.8623 14 7 3.2904 -6.5400 4.9124 15 6 4.2561 -7.6107 4.6311 16 6 5.6205 -7.0107 4.4081 17 8 5.7734 -5.8094 4.4772 18 7 6.6709 -7.8091 4.1329 19 6 7.9122 -7.2634 3.9305 20 1 8.0481 -6.1936 3.9912 21 6 8.9950 -8.0863 3.6463 22 7 8.8294 -9.3879 3.5720 23 14 10.6864 -7.3429 3.3713 24 1 11.1067 -6.6047 4.5893 25 1 11.6627 -8.4252 3.0874 26 1 10.6346 -6.4075 2.2190 27 6 1.9054 -7.0590 4.9008 28 6 1.0081 -5.9390 4.3423 29 1 0.4996 -6.2767 3.4393 30 6 -0.0135 -5.5027 5.3945 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9564 -0.8900 38 1 3.9337 -1.2343 0.3596 39 1 3.9330 0.3072 1.2498 40 1 3.9333 -1.2342 2.1398 41 1 1.9646 -2.7027 0.4075 42 1 0.4437 -2.1650 1.1597 43 1 1.0808 -4.6117 2.0922 44 1 4.1579 -4.7967 4.0490 45 1 3.4311 -5.9397 2.8734 46 1 3.9472 -8.1531 3.7375 47 1 4.2947 -8.2966 5.4774 48 1 6.5486 -8.7698 4.0781 49 1 9.5854 -9.9624 3.3740 50 1 1.8438 -7.9385 4.2601 51 1 1.5967 -7.3156 5.9142 52 1 0.5087 -5.1574 6.2866 53 1 -0.6238 -4.6930 4.9944 54 1 -0.6533 -6.3469 5.6517 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206545849.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:41 Heat of formation + Delta-G solvation = -112.329591 kcal Electronic energy + Delta-G solvation = -30507.636388 eV Core-core repulsion = 26477.521815 eV Total energy + Delta-G solvation = -4030.114573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.39789 -40.52918 -39.32780 -38.02031 -36.11816 -35.43396 -33.67170 -33.29506 -32.43986 -30.43092 -29.45651 -28.49251 -27.12562 -26.79228 -25.33624 -23.94983 -22.54741 -21.65881 -21.12548 -20.97058 -20.37436 -19.90015 -18.15670 -17.69026 -17.62474 -16.68180 -16.53081 -16.34239 -15.98641 -15.86751 -15.68633 -15.35121 -15.15735 -14.81955 -14.70664 -14.48977 -14.45693 -14.15084 -13.86527 -13.68177 -13.53625 -13.18134 -13.17935 -13.00021 -12.90926 -12.81419 -12.69030 -12.62098 -12.46611 -12.41857 -12.18102 -12.14770 -11.96932 -11.84814 -11.68508 -11.55807 -11.49850 -11.36544 -11.28136 -10.65844 -10.27268 -10.06887 -9.94615 -9.33179 -8.49743 -5.98426 1.36297 1.38315 1.49288 1.69277 2.00864 2.15210 2.26610 2.89306 3.16729 3.33472 3.56640 3.68852 3.74964 3.82064 3.94627 3.95220 4.16702 4.21595 4.25759 4.27397 4.36609 4.45420 4.52116 4.57054 4.58074 4.58906 4.69562 4.69812 4.75599 4.81486 4.88784 4.92252 4.96834 5.03848 5.06697 5.08686 5.10293 5.13984 5.23344 5.25343 5.29673 5.36795 5.37775 5.44472 5.53101 5.57681 5.61420 5.82809 5.94986 6.11234 6.57726 6.61054 7.10039 7.35646 7.51905 8.09318 8.67444 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009495 B = 0.002761 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.351876 B =10137.368105 C =12653.169001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.151 4.151 4 C -0.066 4.066 5 H 0.059 0.941 6 C -0.155 4.155 7 C -0.131 4.131 8 C 0.503 3.497 9 O -0.580 6.580 10 N -0.711 5.711 11 C 0.150 3.850 12 H 0.073 0.927 13 C 0.039 3.961 14 N -0.516 5.516 15 C 0.050 3.950 16 C 0.434 3.566 17 O -0.617 6.617 18 N -0.571 5.571 19 C -0.334 4.334 20 H 0.075 0.925 21 C -0.011 4.011 22 N -0.918 5.918 23 Si 0.991 3.009 24 H -0.274 1.274 25 H -0.266 1.266 26 H -0.273 1.273 27 C 0.036 3.964 28 C -0.094 4.094 29 H 0.108 0.892 30 C -0.135 4.135 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.037 0.963 41 H 0.109 0.891 42 H 0.127 0.873 43 H 0.416 0.584 44 H 0.061 0.939 45 H 0.031 0.969 46 H 0.073 0.927 47 H 0.113 0.887 48 H 0.397 0.603 49 H 0.279 0.721 50 H 0.065 0.935 51 H 0.095 0.905 52 H 0.045 0.955 53 H 0.061 0.939 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.753 8.375 -8.150 26.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.208 4.208 4 C -0.085 4.085 5 H 0.077 0.923 6 C -0.213 4.213 7 C -0.170 4.170 8 C 0.291 3.709 9 O -0.459 6.459 10 N -0.364 5.364 11 C 0.043 3.957 12 H 0.091 0.909 13 C -0.090 4.090 14 N -0.241 5.241 15 C -0.081 4.081 16 C 0.222 3.778 17 O -0.503 6.503 18 N -0.208 5.208 19 C -0.464 4.464 20 H 0.093 0.907 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.814 3.186 24 H -0.199 1.199 25 H -0.191 1.191 26 H -0.198 1.198 27 C -0.091 4.091 28 C -0.114 4.114 29 H 0.126 0.874 30 C -0.192 4.192 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.056 0.944 41 H 0.128 0.872 42 H 0.145 0.855 43 H 0.253 0.747 44 H 0.079 0.921 45 H 0.049 0.951 46 H 0.091 0.909 47 H 0.131 0.869 48 H 0.231 0.769 49 H 0.088 0.912 50 H 0.083 0.917 51 H 0.113 0.887 52 H 0.064 0.936 53 H 0.080 0.920 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -22.936 9.633 -7.036 25.853 hybrid contribution 1.195 -0.813 -0.855 1.679 sum -21.741 8.820 -7.891 24.754 Atomic orbital electron populations 1.21922 0.94095 1.02608 1.02013 1.21131 0.96552 0.96037 0.96872 1.21899 1.01020 0.95977 1.01893 1.20879 0.94968 0.94006 0.98638 0.92295 1.21980 0.96446 1.01687 1.01149 1.21891 1.04805 0.96350 0.93984 1.21509 0.78028 0.81733 0.89611 1.90705 1.40988 1.65456 1.48776 1.45899 1.57627 1.12595 1.20267 1.21776 0.92721 0.94234 0.86952 0.90865 1.23490 0.98490 0.94837 0.92226 1.64484 1.04369 1.10000 1.45238 1.22011 0.89422 0.94080 1.02604 1.20843 0.87382 0.87199 0.82387 1.90487 1.85691 1.16574 1.57546 1.41896 1.07193 1.09372 1.62367 1.19577 0.85762 0.93719 1.47304 0.90738 1.26005 1.03086 0.95605 0.96363 1.69659 1.33930 1.03559 1.48753 0.85028 0.76870 0.77884 0.78795 1.19913 1.19072 1.19792 1.23185 0.86307 0.96901 1.02748 1.22231 0.95369 0.92934 1.00818 0.87383 1.21779 0.97840 1.02117 0.97493 0.93122 0.91811 0.91245 0.90403 0.93191 0.93024 0.91638 0.92752 0.92317 0.94407 0.87241 0.85542 0.74653 0.92055 0.95065 0.90914 0.86918 0.76918 0.91191 0.91666 0.88712 0.93578 0.92018 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.85 71.98 0.64 -0.93 16 2 C -0.09 -1.22 2.51 -10.79 -0.03 -1.25 16 3 C -0.15 -2.18 8.84 71.98 0.64 -1.54 16 4 C -0.07 -1.29 1.62 -10.79 -0.02 -1.31 16 5 H 0.06 1.38 7.95 -2.39 -0.02 1.36 16 6 C -0.16 -3.90 8.58 71.98 0.62 -3.28 16 7 C -0.13 -2.18 4.96 29.85 0.15 -2.03 16 8 C 0.50 13.07 7.55 87.66 0.66 13.74 16 9 O -0.58 -21.52 13.61 -3.03 -0.04 -21.56 16 10 N -0.71 -15.49 5.18 -436.84 -2.26 -17.75 16 11 C 0.15 4.12 2.97 46.19 0.14 4.26 16 12 H 0.07 2.49 7.27 -2.39 -0.02 2.48 16 13 C 0.04 1.43 4.99 86.65 0.43 1.86 16 14 N -0.52 -17.61 5.26 -887.54 -4.67 -22.28 16 15 C 0.05 1.80 5.52 85.56 0.47 2.28 16 16 C 0.43 21.63 7.49 87.66 0.66 22.28 16 17 O -0.62 -35.97 13.10 -3.07 -0.04 -36.01 16 18 N -0.57 -30.22 5.29 -306.98 -1.62 -31.85 16 19 C -0.33 -19.57 9.68 84.04 0.81 -18.76 16 20 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 22 N -0.92 -50.18 13.05 21.66 0.28 -49.90 16 23 Si 0.99 44.10 29.55 68.60 2.03 46.12 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 27 C 0.04 0.81 6.35 86.44 0.55 1.36 16 28 C -0.09 -1.76 3.32 -9.91 -0.03 -1.79 16 29 H 0.11 1.39 7.75 -2.39 -0.02 1.37 16 30 C -0.13 -2.13 8.90 71.98 0.64 -1.49 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.55 6.32 -2.39 -0.02 0.53 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 0.82 6.43 -2.39 -0.02 0.81 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.37 6.43 -2.38 -0.02 1.35 16 40 H 0.04 1.26 5.95 -2.39 -0.01 1.25 16 41 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.13 1.28 6.17 -2.39 -0.01 1.26 16 43 H 0.42 5.58 8.39 -92.71 -0.78 4.80 16 44 H 0.06 3.04 5.97 -2.39 -0.01 3.02 16 45 H 0.03 1.14 8.02 -2.39 -0.02 1.12 16 46 H 0.07 2.27 7.81 -2.39 -0.02 2.25 16 47 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 48 H 0.40 19.76 7.90 -92.71 -0.73 19.03 16 49 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 50 H 0.07 1.23 7.57 -2.39 -0.02 1.21 16 51 H 0.09 1.91 7.69 -2.39 -0.02 1.89 16 52 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 53 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 54 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -78.52 416.63 -0.15 -78.67 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -0.61 Total: 41.28 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: 6.79 Total: 13.28 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -8.27 Total: -121.78 kcal Atomic # 8 Polarization: -57.49 SS G_CDS: -0.08 Total: -57.57 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -78.52 -0.15 -78.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206545849.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.659 kcal (2) G-P(sol) polarization free energy of solvation -78.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds