Wall clock time and date at job start Sat Apr 11 2020 05:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 110.63963 * 2 1 4 4 C 1.54334 * 110.85086 * 236.83407 * 2 1 3 5 5 N 1.47024 * 107.26646 * 219.67074 * 4 2 1 6 6 C 1.36932 * 125.64836 * 178.85202 * 5 4 2 7 7 H 1.08001 * 120.00172 * 347.84778 * 6 5 4 8 8 C 1.38810 * 119.99990 * 167.85563 * 6 5 4 9 9 N 1.31624 * 119.99867 * 326.24876 * 8 6 5 10 10 Si 1.86800 * 120.00129 * 145.98140 * 8 6 5 11 11 H 1.48506 * 109.47282 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47535 * 119.99869 * 10 8 6 13 13 H 1.48503 * 109.47098 * 239.99494 * 10 8 6 14 14 C 1.47422 * 108.70201 * 358.58505 * 5 4 2 15 15 C 1.54913 * 104.83247 * 24.35686 * 14 5 4 16 16 H 1.08995 * 111.00610 * 81.06475 * 15 14 5 17 17 N 1.46497 * 111.00373 * 204.87955 * 15 14 5 18 18 C 1.34777 * 120.00030 * 273.54696 * 17 15 14 19 19 O 1.21279 * 120.00139 * 359.97438 * 18 17 15 20 20 C 1.50698 * 120.00191 * 180.02562 * 18 17 15 21 21 C 1.53001 * 109.47494 * 179.97438 * 20 18 17 22 22 C 1.52992 * 109.47633 * 179.97438 * 21 20 18 23 23 N 1.46503 * 109.47364 * 179.97438 * 22 21 20 24 24 C 1.34771 * 119.99736 * 179.97438 * 23 22 21 25 25 O 1.21281 * 120.00613 * 0.02562 * 24 23 22 26 26 C 1.50709 * 119.99702 * 179.97438 * 24 23 22 27 27 C 1.53001 * 109.46940 * 180.02562 * 26 24 23 28 28 C 1.52999 * 109.46989 * 300.00462 * 26 24 23 29 29 C 1.52992 * 109.46922 * 60.00229 * 26 24 23 30 30 H 1.09000 * 109.47522 * 296.85818 * 1 2 3 31 31 H 1.09001 * 109.47262 * 56.85915 * 1 2 3 32 32 H 1.09001 * 109.47218 * 176.85755 * 1 2 3 33 33 H 1.09007 * 109.99211 * 100.19376 * 4 2 1 34 34 H 1.09002 * 109.77986 * 339.02692 * 4 2 1 35 35 H 0.96994 * 119.99575 * 353.97716 * 9 8 6 36 36 H 1.08998 * 110.36625 * 143.19544 * 14 5 4 37 37 H 1.08997 * 110.36749 * 265.40909 * 14 5 4 38 38 H 0.97006 * 120.00267 * 93.54539 * 17 15 14 39 39 H 1.08998 * 109.47467 * 299.99613 * 20 18 17 40 40 H 1.08997 * 109.47611 * 59.99448 * 20 18 17 41 41 H 1.09008 * 109.46766 * 300.00361 * 21 20 18 42 42 H 1.08997 * 109.46928 * 59.99292 * 21 20 18 43 43 H 1.09006 * 109.47068 * 300.00465 * 22 21 20 44 44 H 1.09001 * 109.47041 * 59.99484 * 22 21 20 45 45 H 0.96994 * 119.99517 * 359.97438 * 23 22 21 46 46 H 1.09003 * 109.47005 * 60.00285 * 27 26 24 47 47 H 1.09001 * 109.46580 * 179.97438 * 27 26 24 48 48 H 1.08997 * 109.46979 * 300.00069 * 27 26 24 49 49 H 1.08995 * 109.47203 * 59.99801 * 28 26 24 50 50 H 1.08994 * 109.46908 * 180.02562 * 28 26 24 51 51 H 1.09003 * 109.47334 * 299.99946 * 28 26 24 52 52 H 1.09008 * 109.47322 * 60.00227 * 29 26 24 53 53 H 1.09004 * 109.47239 * 179.97438 * 29 26 24 54 54 H 1.09002 * 109.47574 * 300.00116 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0793 -0.7890 -1.2073 5 7 3.2445 -1.5519 -0.7364 6 6 4.0043 -2.3994 -1.4977 7 1 3.6582 -2.7053 -2.4739 8 6 5.2194 -2.8653 -1.0147 9 7 5.9612 -2.0954 -0.2469 10 14 5.7985 -4.5875 -1.4484 11 1 4.7870 -5.2468 -2.3131 12 1 7.0924 -4.5071 -2.1726 13 1 5.9761 -5.3781 -0.2039 14 6 3.4633 -1.2485 0.6896 15 6 2.0789 -0.7934 1.2151 16 1 1.4452 -1.6511 1.4403 17 7 2.2214 0.0730 2.3878 18 6 2.3156 -0.4687 3.6184 19 8 2.2819 -1.6733 3.7549 20 6 2.4615 0.4225 4.8248 21 6 2.5460 -0.4378 6.0872 22 6 2.6949 0.4669 7.3120 23 7 2.7751 -0.3568 8.5208 24 6 2.9104 0.2284 9.7273 25 8 2.9652 1.4370 9.8124 26 6 2.9924 -0.6190 10.9709 27 6 3.1413 0.2858 12.1956 28 6 1.7163 -1.4524 11.1051 29 6 4.2021 -1.5506 10.8743 30 1 -0.3634 0.4643 0.9168 31 1 -0.3634 0.5618 -0.8605 32 1 -0.3634 -1.0261 -0.0563 33 1 2.3814 -0.1003 -1.9964 34 1 1.3156 -1.4714 -1.5804 35 1 5.7025 -1.1740 -0.0896 36 1 3.7961 -2.1404 1.2205 37 1 4.1945 -0.4477 0.7992 38 1 2.2480 1.0365 2.2787 39 1 3.3695 1.0179 4.7291 40 1 1.5986 1.0848 4.8940 41 1 1.6377 -1.0329 6.1828 42 1 3.4088 -1.1003 6.0183 43 1 3.6033 1.0617 7.2161 44 1 1.8323 1.1298 7.3810 45 1 2.7309 -1.3234 8.4528 46 1 2.2792 0.9493 12.2642 47 1 3.2002 -0.3271 13.0951 48 1 4.0502 0.8798 12.1001 49 1 1.6098 -2.0969 10.2326 50 1 1.7755 -2.0649 12.0048 51 1 0.8544 -0.7887 11.1739 52 1 5.1113 -0.9568 10.7786 53 1 4.2617 -2.1632 11.7739 54 1 4.0957 -2.1952 10.0017 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208263443.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:58 Heat of formation + Delta-G solvation = -108.219117 kcal Electronic energy + Delta-G solvation = -29655.214108 eV Core-core repulsion = 25625.277778 eV Total energy + Delta-G solvation = -4029.936330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.25912 -41.02473 -39.39215 -36.93024 -36.50241 -35.84050 -34.44722 -33.57091 -32.18630 -29.98434 -28.37495 -28.23880 -27.72214 -27.19318 -25.42560 -24.02815 -22.87210 -22.22393 -21.67606 -20.95788 -20.18234 -19.61555 -18.20236 -17.68177 -17.49857 -17.09552 -16.94390 -16.47147 -16.22268 -15.78042 -15.57464 -15.39862 -15.19404 -14.90380 -14.68765 -14.54405 -14.44092 -14.27226 -14.05609 -13.53160 -13.35819 -13.26011 -13.16423 -13.05529 -13.01005 -12.84864 -12.71693 -12.64238 -12.53136 -12.51774 -12.17608 -12.10270 -11.93329 -11.90530 -11.89006 -11.86210 -11.70221 -11.59565 -10.94809 -10.70647 -10.50208 -10.12189 -10.09994 -9.08937 -8.44594 -5.33471 1.52370 1.60469 1.60786 1.64980 1.77706 2.00070 2.30940 2.60067 3.09867 3.47222 3.51637 3.59552 3.71359 3.82909 3.86186 3.91061 3.94005 3.98650 4.00671 4.20406 4.29012 4.38652 4.45218 4.51496 4.54642 4.64514 4.69085 4.70451 4.71406 4.78247 4.81028 4.92548 4.93217 4.93718 4.95345 4.99923 5.02634 5.06042 5.09978 5.16215 5.18185 5.23791 5.31365 5.32586 5.36126 5.44159 5.53179 5.63507 6.24099 6.50073 6.57629 6.82283 7.20302 7.29356 7.65224 8.23110 8.89792 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013572 B = 0.002011 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2062.607980 B =13919.858515 C =15341.217395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 H 0.098 0.902 4 C 0.132 3.868 5 N -0.625 5.625 6 C -0.355 4.355 7 H 0.065 0.935 8 C -0.077 4.077 9 N -0.935 5.935 10 Si 1.111 2.889 11 H -0.270 1.270 12 H -0.286 1.286 13 H -0.292 1.292 14 C 0.151 3.849 15 C 0.148 3.852 16 H 0.074 0.926 17 N -0.705 5.705 18 C 0.505 3.495 19 O -0.588 6.588 20 C -0.126 4.126 21 C -0.107 4.107 22 C 0.124 3.876 23 N -0.721 5.721 24 C 0.516 3.484 25 O -0.585 6.585 26 C -0.086 4.086 27 C -0.126 4.126 28 C -0.139 4.139 29 C -0.140 4.140 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.025 0.975 34 H 0.033 0.967 35 H 0.253 0.747 36 H 0.001 0.999 37 H 0.006 0.994 38 H 0.417 0.583 39 H 0.115 0.885 40 H 0.131 0.869 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.412 0.588 46 H 0.049 0.951 47 H 0.084 0.916 48 H 0.046 0.954 49 H 0.069 0.931 50 H 0.087 0.913 51 H 0.053 0.947 52 H 0.050 0.950 53 H 0.088 0.912 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.005 6.650 21.232 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.110 4.110 3 H 0.117 0.883 4 C 0.007 3.993 5 N -0.353 5.353 6 C -0.483 4.483 7 H 0.082 0.918 8 C -0.274 4.274 9 N -0.577 5.577 10 Si 0.935 3.065 11 H -0.195 1.195 12 H -0.212 1.212 13 H -0.219 1.219 14 C 0.024 3.976 15 C 0.042 3.958 16 H 0.092 0.908 17 N -0.358 5.358 18 C 0.294 3.706 19 O -0.468 6.468 20 C -0.166 4.166 21 C -0.145 4.145 22 C 0.000 4.000 23 N -0.373 5.373 24 C 0.304 3.696 25 O -0.465 6.465 26 C -0.089 4.089 27 C -0.184 4.184 28 C -0.196 4.196 29 C -0.198 4.198 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.020 0.980 37 H 0.024 0.976 38 H 0.255 0.745 39 H 0.133 0.867 40 H 0.149 0.851 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.248 0.752 46 H 0.068 0.932 47 H 0.103 0.897 48 H 0.065 0.935 49 H 0.088 0.912 50 H 0.106 0.894 51 H 0.073 0.927 52 H 0.069 0.931 53 H 0.106 0.894 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.795 5.485 21.537 24.708 hybrid contribution -0.560 1.111 -0.862 1.514 sum -11.355 6.596 20.675 24.493 Atomic orbital electron populations 1.21693 0.91408 1.02165 1.03362 1.22363 0.97900 0.98949 0.91819 0.88332 1.21620 0.88845 0.93079 0.95730 1.44747 1.32691 1.51930 1.05901 1.19987 1.02205 1.23361 1.02714 0.91756 1.27071 0.92653 1.07977 0.99691 1.70853 1.36398 1.07475 1.42971 0.82956 0.75569 0.71989 0.75944 1.19520 1.21236 1.21877 1.21599 0.95140 0.95934 0.84945 1.21877 0.95083 0.93598 0.85287 0.90766 1.45775 1.74114 1.10746 1.05116 1.21480 0.74517 0.89137 0.85506 1.90715 1.51447 1.17769 1.86849 1.21571 1.07093 0.98168 0.89763 1.21392 1.03513 0.97712 0.91911 1.21298 1.02294 0.93444 0.82934 1.46016 1.73961 1.11355 1.05974 1.21186 0.74393 0.88355 0.85703 1.90668 1.51735 1.16620 1.87516 1.20879 0.99435 0.96330 0.92218 1.21663 1.01787 0.98794 0.96161 1.21883 0.94252 0.99327 1.04131 1.21896 0.95207 0.98526 1.04150 0.90570 0.90475 0.93381 0.95726 0.94849 0.93669 0.98016 0.97583 0.74507 0.86723 0.85090 0.90664 0.92020 0.91837 0.90902 0.75172 0.93191 0.89675 0.93464 0.91208 0.89429 0.92738 0.93090 0.89358 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 9.16 71.98 0.66 -2.18 16 2 C -0.09 -2.71 3.16 -9.60 -0.03 -2.74 16 3 H 0.10 2.53 8.00 -2.38 -0.02 2.51 16 4 C 0.13 5.36 6.85 86.73 0.59 5.96 16 5 N -0.63 -33.02 3.33 -691.96 -2.30 -35.32 16 6 C -0.35 -20.98 9.97 84.03 0.84 -20.14 16 7 H 0.06 3.76 8.02 -2.91 -0.02 3.74 16 8 C -0.08 -4.65 4.96 84.86 0.42 -4.23 16 9 N -0.94 -59.81 12.86 21.65 0.28 -59.53 16 10 Si 1.11 53.73 30.03 68.60 2.06 55.79 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 13 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 14 C 0.15 7.49 5.03 86.86 0.44 7.93 16 15 C 0.15 5.34 2.77 46.38 0.13 5.47 16 16 H 0.07 3.00 7.63 -2.39 -0.02 2.98 16 17 N -0.71 -19.04 5.23 -435.97 -2.28 -21.32 16 18 C 0.51 14.35 7.83 87.66 0.69 15.04 16 19 O -0.59 -23.01 15.73 -3.03 -0.05 -23.06 16 20 C -0.13 -2.14 5.70 29.85 0.17 -1.97 16 21 C -0.11 -1.92 4.62 30.59 0.14 -1.78 16 22 C 0.12 2.07 5.67 86.38 0.49 2.56 16 23 N -0.72 -11.84 5.34 -463.06 -2.47 -14.31 16 24 C 0.52 10.32 6.48 87.66 0.57 10.89 16 25 O -0.59 -16.61 15.98 -3.03 -0.05 -16.66 16 26 C -0.09 -1.15 0.87 -52.93 -0.05 -1.20 16 27 C -0.13 -1.80 7.76 71.98 0.56 -1.24 16 28 C -0.14 -1.30 8.37 71.98 0.60 -0.70 16 29 C -0.14 -1.49 8.37 71.98 0.60 -0.88 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.17 8.07 -2.39 -0.02 1.15 16 33 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.03 1.33 7.77 -2.39 -0.02 1.32 16 35 H 0.25 16.41 6.43 -92.71 -0.60 15.82 16 36 H 0.00 0.08 7.81 -2.39 -0.02 0.06 16 37 H 0.01 0.34 7.02 -2.39 -0.02 0.32 16 38 H 0.42 7.82 8.52 -92.70 -0.79 7.04 16 39 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.07 1.41 8.10 -2.38 -0.02 1.39 16 42 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 43 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 45 H 0.41 5.11 7.31 -92.71 -0.68 4.43 16 46 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 47 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 49 H 0.07 0.55 7.56 -2.39 -0.02 0.53 16 50 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 51 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 53 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 54 H 0.07 0.63 7.56 -2.39 -0.02 0.62 16 Total: -1.00 -85.67 429.18 1.58 -84.09 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.42 Total: 19.55 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 6.82 Total: 10.78 kcal Atomic # 7 Polarization: -123.71 SS G_CDS: -6.78 Total: -130.48 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -0.10 Total: -39.73 kcal Atomic # 14 Polarization: 53.73 SS G_CDS: 2.06 Total: 55.79 kcal Total: -85.67 1.58 -84.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208263443.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.129 kcal (2) G-P(sol) polarization free energy of solvation -85.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds