Wall clock time and date at job start Sat Apr 11 2020 05:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 109.47250 * 2 1 4 4 C 1.53000 * 109.47499 * 120.00493 * 2 1 3 5 5 C 1.53000 * 109.47249 * 174.99961 * 4 2 1 6 6 C 1.52998 * 109.46961 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47350 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99525 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00315 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00302 * 180.02562 * 9 7 6 11 11 H 1.09006 * 110.28689 * 32.87183 * 10 9 7 12 12 C 1.54381 * 110.40875 * 270.69210 * 10 9 7 13 13 N 1.48568 * 104.59175 * 264.90942 * 12 10 9 14 14 C 1.46897 * 110.99712 * 200.96296 * 13 12 10 15 15 C 1.50701 * 109.47237 * 290.12360 * 14 13 12 16 16 O 1.21301 * 119.99808 * 0.02562 * 15 14 13 17 17 N 1.34777 * 120.00445 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99970 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00128 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99632 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00175 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99883 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47318 * 90.00161 * 22 20 18 24 24 H 1.48502 * 109.47176 * 210.00058 * 22 20 18 25 25 H 1.48499 * 109.47040 * 329.99687 * 22 20 18 26 26 C 1.48561 * 104.22108 * 320.51487 * 13 12 10 27 27 C 1.54259 * 110.32746 * 155.00250 * 10 9 7 28 28 H 1.08999 * 110.32427 * 359.97438 * 27 10 9 29 29 C 1.53006 * 110.32130 * 237.89543 * 27 10 9 30 30 H 1.09000 * 109.47285 * 299.99555 * 1 2 3 31 31 H 1.08999 * 109.47517 * 59.99967 * 1 2 3 32 32 H 1.08998 * 109.47465 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47285 * 240.00444 * 2 1 3 34 34 H 1.09003 * 109.47069 * 60.00262 * 3 2 1 35 35 H 1.09001 * 109.47379 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47399 * 300.00294 * 3 2 1 37 37 H 1.08998 * 109.46842 * 54.99725 * 4 2 1 38 38 H 1.09003 * 109.46857 * 295.00387 * 4 2 1 39 39 H 1.09000 * 109.46911 * 60.00294 * 5 4 2 40 40 H 1.08995 * 109.47240 * 300.00151 * 5 4 2 41 41 H 1.09001 * 109.47275 * 59.99850 * 6 5 4 42 42 H 1.09003 * 109.47196 * 300.00458 * 6 5 4 43 43 H 0.97004 * 120.00150 * 0.02562 * 9 7 6 44 44 H 1.08992 * 110.41606 * 23.68939 * 12 10 9 45 45 H 1.09007 * 110.41085 * 146.01632 * 12 10 9 46 46 H 1.08994 * 109.47573 * 50.12176 * 14 13 12 47 47 H 1.08998 * 109.47283 * 170.13003 * 14 13 12 48 48 H 0.96998 * 119.99464 * 0.02562 * 17 15 14 49 49 H 0.97000 * 120.00271 * 179.97438 * 21 20 18 50 50 H 1.08998 * 110.41386 * 280.70938 * 26 13 12 51 51 H 1.09004 * 110.40913 * 158.26170 * 26 13 12 52 52 H 1.09001 * 109.46801 * 59.99826 * 29 27 10 53 53 H 1.09001 * 109.46998 * 179.97438 * 29 27 10 54 54 H 1.09000 * 109.47050 * 299.99713 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5648 -0.8311 1.1878 6 6 4.0749 -1.5519 2.4373 7 6 5.5767 -1.6606 2.3766 8 8 6.1797 -1.2059 1.4277 9 7 6.2498 -2.2622 3.3773 10 6 7.7098 -2.3674 3.3187 11 1 8.1310 -1.5005 2.8095 12 6 8.1274 -3.6674 2.5984 13 7 8.3518 -4.6464 3.6932 14 6 9.2094 -5.7511 3.2439 15 6 8.4531 -6.6058 2.2597 16 8 7.3121 -6.3222 1.9615 17 7 9.0445 -7.6854 1.7108 18 6 8.3563 -8.4631 0.8158 19 1 7.3404 -8.2106 0.5503 20 6 8.9663 -9.5758 0.2495 21 7 10.2026 -9.8828 0.5722 22 14 8.0288 -10.6352 -0.9705 23 1 8.2522 -10.1219 -2.3459 24 1 8.5104 -12.0371 -0.8811 25 1 6.5786 -10.5889 -0.6542 26 6 9.0181 -3.8550 4.7595 27 6 8.2958 -2.4908 4.7403 28 1 7.4971 -2.4726 5.4818 29 6 9.2907 -1.3589 5.0051 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4425 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6053 -1.7199 1.2950 38 1 1.7516 -0.1585 2.1369 39 1 3.9994 0.1675 1.1420 40 1 3.8532 -1.3939 0.3001 41 1 3.6403 -2.5504 2.4836 42 1 3.7865 -0.9887 3.3248 43 1 5.7676 -2.6256 4.1365 44 1 7.3296 -4.0102 1.9396 45 1 9.0456 -3.5104 2.0324 46 1 10.1009 -5.3472 2.7643 47 1 9.5010 -6.3568 4.1019 48 1 9.9569 -7.9124 1.9495 49 1 10.6283 -10.6598 0.1771 50 1 10.0767 -3.7278 4.5333 51 1 8.8908 -4.3390 5.7278 52 1 8.7823 -0.3992 4.9119 53 1 9.6954 -1.4591 6.0122 54 1 10.1027 -1.4119 4.2799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208837307.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:07 Heat of formation + Delta-G solvation = -123.153703 kcal Electronic energy + Delta-G solvation = -29842.594116 eV Core-core repulsion = 25812.010175 eV Total energy + Delta-G solvation = -4030.583942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31899 -40.30772 -39.24914 -37.83555 -36.05425 -35.35504 -33.92143 -33.47865 -33.24581 -30.23669 -28.91154 -28.03287 -27.82193 -26.80607 -25.34321 -23.43261 -22.36872 -21.63903 -20.96792 -20.85167 -20.67658 -19.86290 -18.07411 -17.78465 -17.42770 -16.93210 -16.67442 -16.48783 -16.33540 -15.86317 -15.62258 -15.43108 -15.20397 -14.90998 -14.78242 -14.44759 -14.20893 -14.04966 -13.81955 -13.56651 -13.40881 -13.26407 -13.12470 -13.04288 -12.99843 -12.83486 -12.62614 -12.50995 -12.49736 -12.44095 -12.28196 -12.14171 -11.89157 -11.85129 -11.71120 -11.53737 -11.50112 -11.44672 -11.31346 -10.78208 -10.34228 -10.04882 -10.00178 -9.40879 -8.48414 -5.96947 1.35526 1.38890 1.51811 1.67675 2.03975 2.26676 2.27451 2.80959 3.17688 3.32606 3.56266 3.65241 3.78249 3.84388 3.98778 4.06880 4.13177 4.21447 4.24514 4.28252 4.33059 4.38497 4.44195 4.50573 4.57994 4.63392 4.69520 4.71761 4.75812 4.80345 4.81848 4.85968 4.90870 4.95472 4.98532 5.04009 5.10461 5.11255 5.20981 5.24081 5.31026 5.35285 5.38668 5.40009 5.53554 5.54961 5.58682 5.79564 5.90396 6.06833 6.59026 6.61507 7.11414 7.31530 7.54638 8.11186 8.69117 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008138 B = 0.002580 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3439.818173 B =10849.370874 C =13859.853344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.102 4.102 6 C -0.133 4.133 7 C 0.504 3.496 8 O -0.592 6.592 9 N -0.707 5.707 10 C 0.149 3.851 11 H 0.085 0.915 12 C 0.030 3.970 13 N -0.499 5.499 14 C 0.046 3.954 15 C 0.439 3.561 16 O -0.616 6.616 17 N -0.575 5.575 18 C -0.331 4.331 19 H 0.076 0.924 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.268 1.268 25 H -0.273 1.273 26 C 0.032 3.968 27 C -0.087 4.087 28 H 0.105 0.895 29 C -0.138 4.138 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.039 0.961 41 H 0.102 0.898 42 H 0.126 0.874 43 H 0.414 0.586 44 H 0.052 0.948 45 H 0.034 0.966 46 H 0.066 0.934 47 H 0.116 0.884 48 H 0.396 0.604 49 H 0.278 0.722 50 H 0.058 0.942 51 H 0.103 0.897 52 H 0.062 0.938 53 H 0.081 0.919 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.245 20.675 11.069 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.205 4.205 4 C -0.145 4.145 5 C -0.140 4.140 6 C -0.173 4.173 7 C 0.293 3.707 8 O -0.473 6.473 9 N -0.358 5.358 10 C 0.043 3.957 11 H 0.103 0.897 12 C -0.099 4.099 13 N -0.223 5.223 14 C -0.086 4.086 15 C 0.227 3.773 16 O -0.501 6.501 17 N -0.213 5.213 18 C -0.461 4.461 19 H 0.094 0.906 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.198 1.198 24 H -0.192 1.192 25 H -0.198 1.198 26 C -0.095 4.095 27 C -0.107 4.107 28 H 0.123 0.877 29 C -0.195 4.195 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.120 0.880 42 H 0.144 0.856 43 H 0.251 0.749 44 H 0.070 0.930 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.134 0.866 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.121 0.879 52 H 0.081 0.919 53 H 0.100 0.900 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.945 20.766 10.343 25.241 hybrid contribution 0.986 -1.005 -1.069 1.768 sum -8.958 19.761 9.274 23.596 Atomic orbital electron populations 1.21812 0.94299 1.01870 1.02165 1.21141 0.96385 0.96530 0.98070 1.21878 1.00715 0.95808 1.02091 1.21626 0.93455 1.00987 0.98473 1.21337 0.96220 1.00302 0.96138 1.21733 0.89095 1.04337 1.02123 1.21458 0.91730 0.76191 0.81331 1.90668 1.71663 1.50358 1.34571 1.45998 1.07049 1.58738 1.24015 1.21712 0.81017 0.95735 0.97234 0.89736 1.23418 0.99634 0.92585 0.94278 1.65106 1.41789 1.07141 1.08255 1.21940 0.93949 0.94253 0.98427 1.20814 0.87963 0.83300 0.85244 1.90483 1.20544 1.73173 1.65948 1.41925 1.15688 1.24191 1.39498 1.19611 0.98780 1.07180 1.20537 0.90630 1.26029 0.96891 0.98408 1.00000 1.69667 1.12901 1.28721 1.44832 0.84948 0.78116 0.77478 0.77920 1.19841 1.19244 1.19787 1.23427 0.96943 0.92960 0.96206 1.22154 0.99169 0.94870 0.94482 0.87669 1.21814 0.98066 0.96760 1.02906 0.91866 0.92587 0.92737 0.92682 0.91817 0.93421 0.92648 0.91647 0.90205 0.91857 0.94207 0.87992 0.85636 0.74887 0.92981 0.94810 0.91647 0.86614 0.77043 0.91291 0.92387 0.87925 0.91906 0.90004 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.19 71.98 0.66 -1.22 16 2 C -0.10 -1.64 2.92 -10.80 -0.03 -1.67 16 3 C -0.15 -2.23 8.95 71.98 0.64 -1.59 16 4 C -0.11 -1.68 4.68 30.59 0.14 -1.53 16 5 C -0.10 -2.13 4.26 30.59 0.13 -2.00 16 6 C -0.13 -2.52 5.70 29.85 0.17 -2.35 16 7 C 0.50 13.88 7.83 87.66 0.69 14.56 16 8 O -0.59 -21.77 15.63 -3.03 -0.05 -21.82 16 9 N -0.71 -16.99 5.07 -438.30 -2.22 -19.21 16 10 C 0.15 3.88 3.05 45.89 0.14 4.02 16 11 H 0.08 2.38 7.13 -2.38 -0.02 2.36 16 12 C 0.03 1.06 5.52 86.45 0.48 1.54 16 13 N -0.50 -16.05 5.06 -886.04 -4.49 -20.54 16 14 C 0.05 1.63 5.30 85.56 0.45 2.09 16 15 C 0.44 21.71 7.59 87.66 0.66 22.38 16 16 O -0.62 -35.30 14.42 -3.09 -0.04 -35.34 16 17 N -0.58 -30.47 5.29 -306.98 -1.62 -32.09 16 18 C -0.33 -19.38 9.68 84.04 0.81 -18.56 16 19 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 20 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 21 N -0.92 -50.58 13.05 21.66 0.28 -50.30 16 22 Si 0.99 44.06 29.55 68.60 2.03 46.09 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 26 C 0.03 0.68 6.03 86.45 0.52 1.20 16 27 C -0.09 -1.57 3.42 -9.90 -0.03 -1.60 16 28 H 0.11 1.52 7.67 -2.39 -0.02 1.50 16 29 C -0.14 -1.89 8.92 71.98 0.64 -1.25 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.83 6.56 -2.39 -0.02 0.82 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.06 1.40 6.52 -2.39 -0.02 1.39 16 40 H 0.04 1.06 8.10 -2.39 -0.02 1.04 16 41 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.13 1.48 8.14 -2.39 -0.02 1.47 16 43 H 0.41 7.65 8.36 -92.71 -0.77 6.87 16 44 H 0.05 2.36 6.82 -2.39 -0.02 2.34 16 45 H 0.03 1.21 7.83 -2.38 -0.02 1.19 16 46 H 0.07 2.13 7.88 -2.39 -0.02 2.11 16 47 H 0.12 3.52 8.13 -2.39 -0.02 3.50 16 48 H 0.40 19.83 7.90 -92.71 -0.73 19.10 16 49 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 50 H 0.06 1.12 7.68 -2.39 -0.02 1.10 16 51 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 52 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 54 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 Total: -1.00 -76.83 427.91 -0.19 -77.02 By element: Atomic # 1 Polarization: 43.10 SS G_CDS: -0.63 Total: 42.48 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 6.55 Total: 13.71 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -8.05 Total: -122.13 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -0.09 Total: -57.16 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -76.83 -0.19 -77.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208837307.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.135 kcal (2) G-P(sol) polarization free energy of solvation -76.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds