Wall clock time and date at job start Sat Apr 11 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46849 * 2 1 4 4 C 1.52997 * 109.47195 * 119.99852 * 2 1 3 5 5 C 1.53000 * 109.47049 * 65.00323 * 4 2 1 6 6 H 1.08999 * 109.46862 * 304.99570 * 5 4 2 7 7 C 1.52998 * 109.47327 * 64.99741 * 5 4 2 8 8 C 1.50704 * 109.47184 * 184.99882 * 5 4 2 9 9 O 1.21274 * 120.00245 * 274.68848 * 8 5 4 10 10 N 1.34780 * 119.99904 * 94.68672 * 8 5 4 11 11 C 1.46931 * 120.62808 * 354.57180 * 10 8 5 12 12 C 1.53193 * 108.77317 * 233.60662 * 11 10 8 13 13 C 1.53042 * 109.31434 * 305.36860 * 12 11 10 14 14 C 1.53039 * 109.53678 * 61.36526 * 13 12 11 15 15 H 1.08995 * 109.50202 * 58.62279 * 14 13 12 16 16 N 1.46900 * 109.49575 * 178.68380 * 14 13 12 17 17 C 1.46899 * 111.00070 * 275.00127 * 16 14 13 18 18 C 1.50705 * 109.46924 * 180.02562 * 17 16 14 19 19 O 1.21289 * 120.00431 * 359.97438 * 18 17 16 20 20 N 1.34772 * 119.99739 * 179.97438 * 18 17 16 21 21 C 1.37099 * 120.00181 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99599 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00138 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00132 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00003 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47421 * 59.99161 * 25 23 21 27 27 H 1.48495 * 109.47476 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46977 * 299.99375 * 25 23 21 29 29 C 1.46922 * 120.63119 * 174.57008 * 10 8 5 30 30 H 1.08997 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47103 * 300.00027 * 1 2 3 32 32 H 1.09003 * 109.47460 * 59.99830 * 1 2 3 33 33 H 1.08995 * 109.47058 * 240.00187 * 2 1 3 34 34 H 1.09000 * 109.46838 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47318 * 300.00272 * 3 2 1 36 36 H 1.09004 * 109.47290 * 60.00088 * 3 2 1 37 37 H 1.08997 * 109.47200 * 305.00062 * 4 2 1 38 38 H 1.08997 * 109.47262 * 185.00201 * 4 2 1 39 39 H 1.09003 * 109.47353 * 184.87017 * 7 5 4 40 40 H 1.08997 * 109.47027 * 304.87309 * 7 5 4 41 41 H 1.09004 * 109.47104 * 64.86837 * 7 5 4 42 42 H 1.09004 * 109.58264 * 113.82464 * 11 10 8 43 43 H 1.08990 * 109.59231 * 353.39393 * 11 10 8 44 44 H 1.09001 * 109.49641 * 185.41467 * 12 11 10 45 45 H 1.08999 * 109.49633 * 65.32037 * 12 11 10 46 46 H 1.09005 * 109.45695 * 301.34369 * 13 12 11 47 47 H 1.08999 * 109.45058 * 181.37814 * 13 12 11 48 48 H 1.00900 * 111.00158 * 38.95264 * 16 14 13 49 49 H 1.09003 * 109.46976 * 299.99518 * 17 16 14 50 50 H 1.08998 * 109.47501 * 59.99861 * 17 16 14 51 51 H 0.97002 * 120.00118 * 359.97438 * 20 18 17 52 52 H 0.97001 * 120.00219 * 180.02562 * 24 23 21 53 53 H 1.09001 * 109.58317 * 6.60756 * 29 10 8 54 54 H 1.08997 * 109.59092 * 246.18194 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1879 6 1 0.5564 -2.2707 1.0527 7 6 2.3449 -2.8707 0.0126 8 6 2.0295 -2.8784 2.4722 9 8 3.1519 -3.3178 2.6057 10 7 1.1345 -3.0008 3.4726 11 6 -0.1893 -2.3711 3.3738 12 6 -0.4153 -1.5010 4.6142 13 6 -0.2154 -2.3504 5.8715 14 6 1.2198 -2.8805 5.9082 15 1 1.9174 -2.0431 5.8975 16 7 1.4199 -3.6695 7.1311 17 6 1.7776 -2.8045 8.2631 18 6 1.9751 -3.6474 9.4967 19 8 1.8314 -4.8504 9.4386 20 7 2.3112 -3.0646 10.6644 21 6 2.4914 -3.8314 11.7865 22 1 2.3634 -4.9025 11.7347 23 6 2.8375 -3.2304 12.9906 24 7 2.9926 -1.9270 13.0537 25 14 3.0822 -4.2751 14.5196 26 1 4.1728 -5.2544 14.2808 27 1 3.4444 -3.4008 15.6639 28 1 1.8243 -5.0011 14.8296 29 6 1.4642 -3.7663 4.6825 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 1.6054 -0.2617 2.1369 38 1 3.1263 -0.6443 1.2952 39 1 1.9914 -3.8973 -0.0840 40 1 2.1285 -2.3239 -0.9051 41 1 3.4205 -2.8720 0.1897 42 1 -0.9579 -3.1424 3.3236 43 1 -0.2329 -1.7502 2.4791 44 1 -1.4305 -1.1046 4.6005 45 1 0.2977 -0.6766 4.6150 46 1 -0.9119 -3.1887 5.8579 47 1 -0.3996 -1.7396 6.7553 48 1 0.6027 -4.2223 7.3425 49 1 2.7012 -2.2720 8.0358 50 1 0.9773 -2.0855 8.4382 51 1 2.4265 -2.1025 10.7108 52 1 3.2346 -1.5075 13.8941 53 1 2.5118 -4.0658 4.6511 54 1 0.8306 -4.6513 4.7389 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210358643.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:38 Heat of formation + Delta-G solvation = -118.230273 kcal Electronic energy + Delta-G solvation = -30257.576697 eV Core-core repulsion = 26227.206251 eV Total energy + Delta-G solvation = -4030.370446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.56105 -40.25067 -39.05804 -37.83589 -36.40213 -35.78342 -33.58992 -33.29503 -33.08335 -31.19546 -28.04372 -27.94756 -27.61107 -26.72648 -25.88548 -24.06642 -23.35893 -21.73668 -21.15282 -20.59617 -19.95559 -19.52079 -18.53909 -17.84894 -17.06886 -16.88738 -16.52655 -16.40692 -16.07820 -15.95667 -15.53152 -15.36301 -15.17630 -14.94071 -14.61930 -14.54439 -14.40134 -14.21163 -13.94658 -13.88918 -13.57620 -13.36792 -13.34295 -13.11380 -12.98224 -12.89637 -12.73307 -12.45832 -12.44359 -12.27805 -12.18034 -12.13221 -12.03218 -11.83603 -11.75192 -11.68335 -11.51947 -11.35686 -11.33729 -10.61550 -10.40898 -10.04053 -9.75528 -9.28356 -8.48222 -5.97325 1.38689 1.40693 1.51770 1.57663 1.90626 2.02127 2.28433 2.92428 3.18573 3.42636 3.49777 3.76133 3.79775 3.80377 3.92466 3.99083 4.11528 4.16318 4.19981 4.25963 4.27852 4.35527 4.41892 4.45448 4.53487 4.57657 4.62238 4.71461 4.79518 4.81164 4.85061 4.86128 4.89037 4.94253 4.99211 5.05331 5.11814 5.16627 5.17258 5.18629 5.28812 5.30484 5.39024 5.39412 5.45742 5.52994 5.60786 5.86239 6.06086 6.36424 6.42186 6.57626 7.10207 7.16503 7.53238 8.08438 8.68918 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021677 B = 0.001905 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.368464 B =14692.631324 C =14934.245933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.093 4.093 3 C -0.149 4.149 4 C -0.099 4.099 5 C -0.102 4.102 6 H 0.122 0.878 7 C -0.138 4.138 8 C 0.510 3.490 9 O -0.591 6.591 10 N -0.608 5.608 11 C 0.098 3.902 12 C -0.124 4.124 13 C -0.148 4.148 14 C 0.084 3.916 15 H 0.070 0.930 16 N -0.678 5.678 17 C 0.070 3.930 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.274 1.274 27 H -0.269 1.269 28 H -0.270 1.270 29 C 0.127 3.873 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.091 0.909 41 H 0.043 0.957 42 H 0.086 0.914 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.349 0.651 49 H 0.095 0.905 50 H 0.071 0.929 51 H 0.396 0.604 52 H 0.278 0.722 53 H 0.063 0.937 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.111 9.587 -28.687 32.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.137 4.137 5 C -0.123 4.123 6 H 0.139 0.861 7 C -0.195 4.195 8 C 0.300 3.700 9 O -0.471 6.471 10 N -0.340 5.340 11 C -0.023 4.023 12 C -0.162 4.162 13 C -0.187 4.187 14 C -0.027 4.027 15 H 0.088 0.912 16 N -0.311 5.311 17 C -0.062 4.062 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.195 1.195 29 C 0.003 3.997 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.169 0.831 49 H 0.113 0.887 50 H 0.089 0.911 51 H 0.230 0.770 52 H 0.088 0.912 53 H 0.081 0.919 54 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.916 8.529 -28.624 31.471 hybrid contribution -0.087 0.215 1.546 1.563 sum -10.004 8.744 -27.079 30.163 Atomic orbital electron populations 1.21946 0.93935 1.02498 1.02511 1.21146 0.96909 0.95874 0.97183 1.21847 1.00693 0.95919 1.02210 1.21561 1.00801 0.91720 0.99654 1.21464 1.03668 0.96260 0.90929 0.86066 1.21744 1.00171 1.00422 0.97206 1.21490 0.83913 0.78543 0.86083 1.90681 1.22489 1.51406 1.82487 1.48255 1.16348 1.52386 1.17055 1.22156 0.82629 0.97376 1.00163 1.21856 1.03900 0.97682 0.92785 1.22269 0.95997 1.00854 0.99599 1.21843 0.97152 0.94833 0.88860 0.91180 1.59934 1.44021 1.24811 1.02290 1.21493 1.02337 0.93908 0.88482 1.20831 0.82511 0.88850 0.85345 1.90490 1.57647 1.16822 1.85949 1.41922 1.61232 1.10046 1.07721 1.19640 1.46389 0.92709 0.87755 0.90293 1.26068 0.96251 0.97305 1.01718 1.69665 1.47660 1.09859 1.28869 0.84972 0.78865 0.77711 0.76684 1.19886 1.19386 1.19502 1.21294 1.01532 0.93816 0.83058 0.91603 0.92126 0.92050 0.90312 0.93420 0.91765 0.92698 0.91252 0.93105 0.92767 0.89033 0.93735 0.89547 0.86939 0.87721 0.91709 0.90677 0.91591 0.83118 0.88695 0.91085 0.76978 0.91240 0.91885 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.95 71.98 0.64 -0.15 16 2 C -0.09 -0.78 2.79 -10.79 -0.03 -0.81 16 3 C -0.15 -1.34 9.19 71.98 0.66 -0.68 16 4 C -0.10 -1.26 4.03 30.59 0.12 -1.14 16 5 C -0.10 -1.44 1.79 -11.54 -0.02 -1.46 16 6 H 0.12 1.00 4.40 -2.39 -0.01 0.99 16 7 C -0.14 -2.02 8.81 71.98 0.63 -1.39 16 8 C 0.51 11.87 6.69 87.66 0.59 12.46 16 9 O -0.59 -20.02 15.58 -3.01 -0.05 -20.07 16 10 N -0.61 -12.12 2.97 -818.90 -2.43 -14.56 16 11 C 0.10 1.07 6.15 86.36 0.53 1.60 16 12 C -0.12 -1.41 6.08 30.67 0.19 -1.22 16 13 C -0.15 -2.59 5.14 30.62 0.16 -2.43 16 14 C 0.08 2.07 2.62 44.99 0.12 2.19 16 15 H 0.07 1.87 7.80 -2.39 -0.02 1.85 16 16 N -0.68 -22.13 5.88 -495.17 -2.91 -25.04 16 17 C 0.07 2.49 5.97 85.56 0.51 3.00 16 18 C 0.44 21.32 7.82 87.66 0.69 22.01 16 19 O -0.62 -35.28 15.78 -3.06 -0.05 -35.33 16 20 N -0.57 -29.96 5.29 -306.99 -1.62 -31.58 16 21 C -0.34 -19.37 9.68 84.04 0.81 -18.56 16 22 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -50.15 13.05 21.66 0.28 -49.87 16 25 Si 0.99 43.46 29.55 68.60 2.03 45.49 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 29 C 0.13 3.25 6.05 86.36 0.52 3.77 16 30 H 0.07 0.24 6.46 -2.39 -0.02 0.22 16 31 H 0.06 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.08 0.63 6.25 -2.39 -0.01 0.61 16 34 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 37 H 0.07 0.85 8.11 -2.39 -0.02 0.83 16 38 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 39 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 0.85 6.25 -2.39 -0.01 0.84 16 41 H 0.04 0.88 7.68 -2.39 -0.02 0.87 16 42 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.11 0.68 5.51 -2.39 -0.01 0.67 16 44 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 46 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.07 1.22 7.43 -2.39 -0.02 1.20 16 48 H 0.35 11.51 8.18 -89.69 -0.73 10.78 16 49 H 0.09 3.21 8.06 -2.39 -0.02 3.19 16 50 H 0.07 2.15 7.42 -2.39 -0.02 2.13 16 51 H 0.40 19.68 7.90 -92.71 -0.73 18.94 16 52 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 53 H 0.06 2.09 7.00 -2.39 -0.02 2.08 16 54 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -75.47 418.28 1.27 -74.20 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: -0.57 Total: 39.84 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 6.59 Total: 16.92 kcal Atomic # 7 Polarization: -114.37 SS G_CDS: -6.68 Total: -121.05 kcal Atomic # 8 Polarization: -55.30 SS G_CDS: -0.10 Total: -55.40 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -75.47 1.27 -74.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210358643.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.034 kcal (2) G-P(sol) polarization free energy of solvation -75.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds