Wall clock time and date at job start Sat Apr 11 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09004 * 109.47289 * 2 1 4 4 C 1.50697 * 109.47366 * 120.00009 * 2 1 3 5 5 O 1.21280 * 120.00008 * 119.99835 * 4 2 1 6 6 N 1.34776 * 120.00046 * 299.99699 * 4 2 1 7 7 C 1.47422 * 125.64665 * 0.04319 * 6 4 2 8 8 C 1.54914 * 104.83189 * 204.08814 * 7 6 4 9 9 H 1.09003 * 110.99862 * 81.06499 * 8 7 6 10 10 C 1.53003 * 111.00540 * 204.91639 * 8 7 6 11 11 C 1.55155 * 101.58069 * 322.99277 * 8 7 6 12 12 H 1.09001 * 110.87045 * 277.06121 * 11 8 7 13 13 N 1.46903 * 110.71933 * 153.86470 * 11 8 7 14 14 C 1.46896 * 110.99955 * 160.02326 * 13 11 8 15 15 C 1.50701 * 109.46946 * 180.02562 * 14 13 11 16 16 O 1.21293 * 120.00278 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00078 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99959 * 179.97438 * 17 15 14 19 19 H 1.07991 * 120.00408 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99816 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99922 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00126 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46986 * 270.00039 * 22 20 18 24 24 H 1.48496 * 109.47029 * 30.00056 * 22 20 18 25 25 H 1.48499 * 109.47352 * 149.99886 * 22 20 18 26 26 C 1.47021 * 125.65009 * 179.97438 * 6 4 2 27 27 C 1.53006 * 109.46877 * 240.00066 * 2 1 3 28 28 C 1.52998 * 109.47172 * 299.99605 * 27 2 1 29 29 C 1.52999 * 109.47177 * 59.99906 * 27 2 1 30 30 C 1.53004 * 109.46993 * 179.97438 * 27 2 1 31 31 H 1.09006 * 109.47062 * 299.99908 * 1 2 3 32 32 H 1.09000 * 109.47582 * 60.00135 * 1 2 3 33 33 H 1.09004 * 109.47289 * 179.97438 * 1 2 3 34 34 H 1.08997 * 110.36838 * 322.93230 * 7 6 4 35 35 H 1.09000 * 110.36912 * 85.14170 * 7 6 4 36 36 H 1.08997 * 109.47051 * 172.20185 * 10 8 7 37 37 H 1.09001 * 109.46673 * 292.19795 * 10 8 7 38 38 H 1.09001 * 109.46792 * 52.19629 * 10 8 7 39 39 H 1.00902 * 110.99560 * 36.06763 * 13 11 8 40 40 H 1.08994 * 109.47346 * 60.00149 * 14 13 11 41 41 H 1.09006 * 109.47133 * 299.99542 * 14 13 11 42 42 H 0.97000 * 119.99555 * 359.97438 * 17 15 14 43 43 H 0.96996 * 120.00340 * 359.97438 * 21 20 18 44 44 H 1.09000 * 109.87937 * 59.56182 * 26 6 4 45 45 H 1.08999 * 109.88175 * 298.39657 * 26 6 4 46 46 H 1.09001 * 109.47010 * 60.00311 * 28 27 2 47 47 H 1.08997 * 109.47085 * 179.97438 * 28 27 2 48 48 H 1.09000 * 109.46889 * 300.00580 * 28 27 2 49 49 H 1.09004 * 109.46989 * 60.00066 * 29 27 2 50 50 H 1.09002 * 109.46630 * 179.97438 * 29 27 2 51 51 H 1.08995 * 109.47362 * 300.00169 * 29 27 2 52 52 H 1.09002 * 109.46990 * 60.00251 * 30 27 2 53 53 H 1.08993 * 109.47274 * 179.97438 * 30 27 2 54 54 H 1.08995 * 109.47235 * 300.00064 * 30 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7295 -1.6965 1.1191 6 7 1.7068 -0.2499 2.4545 7 6 0.8703 0.9315 2.7336 8 6 1.2941 1.3916 4.1509 9 1 2.2092 1.9827 4.1123 10 6 0.1686 2.1712 4.8338 11 6 1.5390 0.0330 4.8591 12 1 0.6030 -0.3876 5.2267 13 7 2.5043 0.1853 5.9560 14 6 2.3961 -0.9261 6.9105 15 6 3.3989 -0.7354 8.0192 16 8 4.1319 0.2310 8.0144 17 7 3.4820 -1.6392 9.0155 18 6 4.3946 -1.4660 10.0238 19 1 5.0472 -0.6056 10.0196 20 6 4.4798 -2.3975 11.0513 21 7 3.6853 -3.4443 11.0567 22 14 5.7238 -2.1620 12.4248 23 1 7.0011 -2.8227 12.0545 24 1 5.9598 -0.7111 12.6354 25 1 5.1993 -2.7649 13.6765 26 6 2.1259 -0.8434 3.7327 27 6 2.0399 -0.7213 -1.2493 28 6 1.5299 -2.1638 -1.2493 29 6 1.5298 0.0000 -2.4985 30 6 3.5699 -0.7207 -1.2497 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.0683 1.7173 2.0046 35 1 -0.1854 0.6605 2.7209 36 1 0.4375 2.3622 5.8727 37 1 0.0179 3.1191 4.3173 38 1 -0.7513 1.5875 4.7979 39 1 2.3869 1.0735 6.4202 40 1 2.5959 -1.8666 6.3972 41 1 1.3905 -0.9478 7.3305 42 1 2.8960 -2.4122 9.0191 43 1 3.0391 -3.5665 10.3437 44 1 3.2139 -0.8518 3.7984 45 1 1.7396 -1.8594 3.8139 46 1 0.4399 -2.1638 -1.2493 47 1 1.8928 -2.6774 -2.1395 48 1 1.8933 -2.6775 -0.3593 49 1 1.8932 1.0277 -2.4985 50 1 1.8935 -0.5137 -3.3885 51 1 0.4399 0.0000 -2.4985 52 1 3.9336 -1.2344 -0.3597 53 1 3.9332 -1.2349 -2.1394 54 1 3.9329 0.3070 -1.2499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214967379.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:56 Heat of formation + Delta-G solvation = -101.825767 kcal Electronic energy + Delta-G solvation = -30607.218811 eV Core-core repulsion = 26577.559718 eV Total energy + Delta-G solvation = -4029.659093 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.75051 -40.45280 -39.61993 -37.61371 -36.57651 -35.78230 -33.62867 -33.10167 -32.26029 -29.91162 -28.37645 -28.10824 -27.68669 -27.42764 -25.96682 -25.10160 -22.96608 -21.77743 -21.27897 -20.78585 -19.98906 -19.34033 -18.45524 -17.86159 -17.46868 -16.90942 -16.68849 -16.43184 -15.92178 -15.73315 -15.52392 -15.40073 -15.23639 -15.05336 -14.89256 -14.50867 -14.39994 -14.04247 -13.91471 -13.54091 -13.45745 -13.34157 -13.20364 -12.98396 -12.86158 -12.82616 -12.77515 -12.72720 -12.38992 -12.20429 -12.12435 -11.96112 -11.94722 -11.90318 -11.88486 -11.54962 -11.54133 -11.42754 -11.34333 -10.45890 -10.39154 -10.13184 -9.65790 -9.50737 -8.94738 -6.08784 1.50764 1.53403 1.63189 1.80948 1.90192 1.98046 2.38748 2.76991 3.14673 3.25153 3.38073 3.45058 3.61599 3.78832 3.86225 4.00942 4.06677 4.13413 4.19657 4.25205 4.32669 4.35008 4.43783 4.46372 4.50184 4.51908 4.58666 4.68874 4.80877 4.82026 4.83230 4.85491 4.88248 4.94547 4.98476 5.02249 5.08497 5.11720 5.18865 5.21923 5.25879 5.28119 5.37795 5.44270 5.56685 5.57571 5.63256 5.89628 5.95700 6.27849 6.54031 6.55687 6.71909 7.19711 7.41674 7.89275 8.52921 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019588 B = 0.002062 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.096756 B =13575.622489 C =14352.879401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 H 0.110 0.890 4 C 0.522 3.478 5 O -0.571 6.571 6 N -0.617 5.617 7 C 0.106 3.894 8 C -0.100 4.100 9 H 0.083 0.917 10 C -0.139 4.139 11 C 0.084 3.916 12 H 0.078 0.922 13 N -0.672 5.672 14 C 0.065 3.935 15 C 0.442 3.558 16 O -0.617 6.617 17 N -0.586 5.586 18 C -0.409 4.409 19 H 0.073 0.927 20 C -0.043 4.043 21 N -0.917 5.917 22 Si 1.136 2.864 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.271 1.271 26 C 0.116 3.884 27 C -0.048 4.048 28 C -0.151 4.151 29 C -0.137 4.137 30 C -0.154 4.154 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.353 0.647 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.384 0.616 43 H 0.259 0.741 44 H 0.046 0.954 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.064 0.936 50 H 0.056 0.944 51 H 0.072 0.928 52 H 0.050 0.950 53 H 0.053 0.947 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.692 10.149 -25.312 30.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.111 4.111 3 H 0.128 0.872 4 C 0.313 3.687 5 O -0.451 6.451 6 N -0.350 5.350 7 C -0.016 4.016 8 C -0.120 4.120 9 H 0.101 0.899 10 C -0.196 4.196 11 C -0.027 4.027 12 H 0.096 0.904 13 N -0.306 5.306 14 C -0.067 4.067 15 C 0.230 3.770 16 O -0.502 6.502 17 N -0.226 5.226 18 C -0.539 4.539 19 H 0.091 0.909 20 C -0.242 4.242 21 N -0.556 5.556 22 Si 0.956 3.044 23 H -0.198 1.198 24 H -0.201 1.201 25 H -0.196 1.196 26 C -0.009 4.009 27 C -0.049 4.049 28 C -0.208 4.208 29 C -0.194 4.194 30 C -0.211 4.211 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.174 0.826 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.219 0.781 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.091 0.909 52 H 0.069 0.931 53 H 0.072 0.928 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.723 9.297 -24.382 29.031 hybrid contribution -1.043 -0.052 -0.642 1.226 sum -13.766 9.246 -25.024 30.020 Atomic orbital electron populations 1.22063 0.91109 1.03039 1.04696 1.21364 0.98964 1.00376 0.90366 0.87173 1.21122 0.79272 0.84190 0.84128 1.90598 1.39755 1.28550 1.86170 1.48558 1.51507 1.30251 1.04688 1.22742 0.95448 0.87048 0.96355 1.22528 1.00653 0.94515 0.94280 0.89863 1.21723 0.96891 1.00806 1.00221 1.22631 0.93034 0.96785 0.90223 0.90387 1.59919 1.53530 1.05011 1.12161 1.21586 0.96679 0.96750 0.91687 1.20830 0.87630 0.84065 0.84517 1.90500 1.47708 1.33086 1.78943 1.42002 1.34910 1.23389 1.22261 1.20541 1.17147 1.11886 1.04296 0.90869 1.27853 1.02298 0.91733 1.02285 1.70941 1.21272 1.28597 1.34768 0.82590 0.72889 0.76456 0.72476 1.19802 1.20117 1.19623 1.21825 0.99272 0.96521 0.83239 1.20320 0.95039 0.95457 0.94043 1.22094 1.00841 0.96003 1.01908 1.21907 1.01888 1.00194 0.95441 1.22077 0.95572 1.01374 1.02051 0.90351 0.88952 0.92770 0.87959 0.88463 0.93036 0.89970 0.90956 0.82570 0.88582 0.90734 0.78143 0.92969 0.93520 0.92602 0.91928 0.93062 0.93024 0.91713 0.92455 0.90876 0.93063 0.92790 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.30 71.98 0.60 -0.81 16 2 C -0.09 -1.32 1.45 -11.54 -0.02 -1.33 16 3 H 0.11 1.27 7.85 -2.38 -0.02 1.26 16 4 C 0.52 12.15 6.63 87.66 0.58 12.73 16 5 O -0.57 -18.24 11.68 -3.03 -0.04 -18.27 16 6 N -0.62 -12.89 3.32 -811.82 -2.70 -15.59 16 7 C 0.11 1.30 4.61 86.86 0.40 1.70 16 8 C -0.10 -1.56 3.07 -9.40 -0.03 -1.59 16 9 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 10 C -0.14 -1.53 9.31 71.98 0.67 -0.86 16 11 C 0.08 1.81 2.71 46.10 0.12 1.94 16 12 H 0.08 1.46 7.80 -2.39 -0.02 1.44 16 13 N -0.67 -20.33 5.92 -489.46 -2.90 -23.23 16 14 C 0.07 2.20 6.02 85.56 0.52 2.71 16 15 C 0.44 21.08 7.82 87.66 0.69 21.76 16 16 O -0.62 -34.48 15.78 -3.07 -0.05 -34.53 16 17 N -0.59 -30.13 5.28 -306.99 -1.62 -31.75 16 18 C -0.41 -23.68 9.68 84.04 0.81 -22.86 16 19 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 20 C -0.04 -2.39 5.50 84.93 0.47 -1.93 16 21 N -0.92 -51.65 13.68 21.66 0.30 -51.35 16 22 Si 1.14 49.15 29.92 68.60 2.05 51.21 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 24 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 25 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 26 C 0.12 2.99 6.55 86.73 0.57 3.56 16 27 C -0.05 -0.77 0.54 -52.18 -0.03 -0.80 16 28 C -0.15 -2.86 7.82 71.98 0.56 -2.29 16 29 C -0.14 -1.41 8.12 71.98 0.58 -0.83 16 30 C -0.15 -3.10 8.18 71.98 0.59 -2.51 16 31 H 0.08 0.52 4.99 -2.38 -0.01 0.51 16 32 H 0.09 0.49 6.43 -2.39 -0.02 0.47 16 33 H 0.05 0.64 6.43 -2.38 -0.02 0.62 16 34 H 0.10 0.82 7.36 -2.39 -0.02 0.81 16 35 H 0.10 0.79 6.91 -2.39 -0.02 0.77 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16 39 H 0.35 10.87 8.20 -89.69 -0.74 10.13 16 40 H 0.10 3.07 8.13 -2.39 -0.02 3.05 16 41 H 0.07 2.09 8.09 -2.38 -0.02 2.07 16 42 H 0.38 18.13 6.73 -92.71 -0.62 17.51 16 43 H 0.26 14.13 6.78 -92.71 -0.63 13.51 16 44 H 0.05 1.55 8.03 -2.39 -0.02 1.53 16 45 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.06 0.97 6.43 -2.39 -0.02 0.96 16 47 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 48 H 0.05 1.34 5.51 -2.39 -0.01 1.32 16 49 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 50 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.07 0.55 6.43 -2.39 -0.02 0.53 16 52 H 0.05 1.40 5.51 -2.39 -0.01 1.39 16 53 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 54 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -77.26 409.31 1.83 -75.43 By element: Atomic # 1 Polarization: 39.80 SS G_CDS: -0.31 Total: 39.49 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 7.09 Total: 8.59 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -6.92 Total: -121.91 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -0.08 Total: -52.80 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.05 Total: 51.21 kcal Total: -77.26 1.83 -75.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214967379.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.393 kcal (2) G-P(sol) polarization free energy of solvation -77.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds