Wall clock time and date at job start Sat Apr 11 2020 05:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 C 1.52999 * 109.46940 * 119.99998 * 2 1 3 5 5 N 1.46507 * 109.47034 * 65.00215 * 4 2 1 6 6 C 1.34781 * 119.99634 * 180.02562 * 5 4 2 7 7 O 1.21588 * 120.00394 * 5.54442 * 6 5 4 8 8 N 1.34780 * 119.99255 * 185.55598 * 6 5 4 9 9 C 1.46919 * 120.63542 * 5.30209 * 8 6 5 10 10 C 1.53194 * 108.77584 * 233.59421 * 9 8 6 11 11 C 1.53048 * 109.30885 * 305.36036 * 10 9 8 12 12 C 1.53041 * 109.53386 * 61.36801 * 11 10 9 13 13 H 1.09000 * 109.49675 * 58.62030 * 12 11 10 14 14 C 1.50704 * 109.49514 * 178.68095 * 12 11 10 15 15 O 1.21286 * 119.99644 * 359.97438 * 14 12 11 16 16 N 1.34771 * 120.00122 * 180.02562 * 14 12 11 17 17 C 1.46502 * 119.99942 * 359.97438 * 16 14 12 18 18 C 1.46505 * 120.00175 * 180.02562 * 16 14 12 19 19 H 1.08997 * 109.46651 * 0.02562 * 18 16 14 20 20 C 1.53006 * 109.47102 * 119.99644 * 18 16 14 21 21 C 1.50695 * 109.46941 * 239.99882 * 18 16 14 22 22 H 1.07996 * 120.00417 * 354.76386 * 21 18 16 23 23 C 1.37885 * 119.99948 * 174.77302 * 21 18 16 24 24 N 1.31518 * 119.99480 * 359.82808 * 23 21 18 25 25 Si 1.86797 * 120.00161 * 179.83220 * 23 21 18 26 26 H 1.48499 * 109.47005 * 265.00364 * 25 23 21 27 27 H 1.48503 * 109.46950 * 145.00346 * 25 23 21 28 28 H 1.48497 * 109.46832 * 25.00590 * 25 23 21 29 29 C 1.46931 * 120.62300 * 185.28723 * 8 6 5 30 30 H 1.09001 * 109.47316 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46760 * 299.99812 * 1 2 3 32 32 H 1.09000 * 109.46833 * 59.99887 * 1 2 3 33 33 H 1.08995 * 109.46920 * 239.99707 * 2 1 3 34 34 H 1.09003 * 109.46702 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47344 * 299.99801 * 3 2 1 36 36 H 1.08999 * 109.47134 * 60.00417 * 3 2 1 37 37 H 1.08998 * 109.47708 * 304.99691 * 4 2 1 38 38 H 1.09001 * 109.47098 * 184.99640 * 4 2 1 39 39 H 0.96999 * 120.00166 * 359.97438 * 5 4 2 40 40 H 1.09000 * 109.58847 * 113.80578 * 9 8 6 41 41 H 1.09005 * 109.70628 * 353.44536 * 9 8 6 42 42 H 1.09004 * 109.49619 * 185.41714 * 10 9 8 43 43 H 1.08995 * 109.52942 * 65.33011 * 10 9 8 44 44 H 1.08996 * 109.46304 * 301.34579 * 11 10 9 45 45 H 1.09002 * 109.45939 * 181.38456 * 11 10 9 46 46 H 1.08991 * 109.47349 * 270.00521 * 17 16 14 47 47 H 1.08999 * 109.46676 * 30.00923 * 17 16 14 48 48 H 1.09000 * 109.46817 * 150.00339 * 17 16 14 49 49 H 1.08996 * 109.47218 * 177.57504 * 20 18 16 50 50 H 1.09001 * 109.46955 * 297.57829 * 20 18 16 51 51 H 1.08999 * 109.46550 * 57.57347 * 20 18 16 52 52 H 0.96999 * 119.99270 * 180.02562 * 24 23 21 53 53 H 1.08993 * 109.59066 * 6.61562 * 29 8 6 54 54 H 1.09003 * 109.57933 * 246.19195 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 1.9955 -2.9681 2.1912 7 8 2.5375 -2.5319 3.1884 8 7 1.7380 -4.2869 2.0863 9 6 1.1907 -4.8462 0.8429 10 6 -0.0775 -5.6387 1.1751 11 6 0.2446 -6.6836 2.2459 12 6 0.7226 -5.9812 3.5189 13 1 -0.0515 -5.2991 3.8705 14 6 1.0086 -7.0090 4.5833 15 8 0.8459 -8.1876 4.3475 16 7 1.4443 -6.6185 5.7974 17 6 1.6403 -5.1949 6.0822 18 6 1.7229 -7.6177 6.8320 19 1 1.5217 -8.6140 6.4383 20 6 3.1915 -7.5224 7.2507 21 6 0.8420 -7.3619 8.0275 22 1 0.2057 -6.4896 8.0528 23 6 0.8483 -8.2415 9.0894 24 7 1.6207 -9.3055 9.0572 25 14 -0.2402 -7.9220 10.5734 26 1 0.5414 -7.2106 11.6166 27 1 -0.7287 -9.2149 11.1165 28 1 -1.3986 -7.0865 10.1668 29 6 1.9997 -5.1925 3.2133 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6055 -0.2618 2.1370 38 1 3.1263 -0.6444 1.2952 39 1 1.1483 -2.4663 0.4319 40 1 1.9259 -5.5082 0.3852 41 1 0.9465 -4.0386 0.1528 42 1 -0.4400 -6.1384 0.2767 43 1 -0.8442 -4.9598 1.5482 44 1 1.0284 -7.3476 1.8814 45 1 -0.6504 -7.2655 2.4665 46 1 2.6607 -4.9102 5.8261 47 1 0.9394 -4.6062 5.4905 48 1 1.4665 -5.0092 7.1421 49 1 3.3883 -8.2362 8.0506 50 1 3.8285 -7.7497 6.3959 51 1 3.4037 -6.5133 7.6039 52 1 1.6249 -9.9244 9.8040 53 1 2.2890 -4.6119 4.0892 54 1 2.8009 -5.8827 2.9489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132889378.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:32 Heat of formation + Delta-G solvation = -92.155608 kcal Electronic energy + Delta-G solvation = -31249.899135 eV Core-core repulsion = 27220.659372 eV Total energy + Delta-G solvation = -4029.239764 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.82011 -40.76951 -38.50272 -37.51404 -37.13041 -35.03105 -34.52157 -33.39801 -32.58854 -30.86417 -28.00944 -27.87535 -27.47340 -27.30452 -25.95813 -24.96398 -23.23276 -21.95883 -21.44260 -20.52955 -19.95170 -18.98789 -18.54934 -17.85364 -17.52375 -17.20197 -16.78128 -16.38700 -16.15515 -15.84243 -15.55030 -15.38440 -15.12557 -14.78891 -14.64018 -14.37190 -14.33416 -14.10550 -14.01961 -13.77482 -13.58886 -13.47276 -13.24840 -12.98462 -12.87974 -12.86723 -12.81002 -12.67975 -12.49792 -12.26582 -12.12325 -12.00161 -11.96547 -11.87733 -11.80701 -11.58904 -11.57225 -11.23171 -11.19506 -10.65031 -10.49516 -10.21094 -9.53597 -9.36223 -8.16862 -6.32323 1.39677 1.40766 1.48906 1.51437 1.79907 2.11915 2.29395 2.46818 2.91424 3.12214 3.56270 3.68595 3.81704 3.83784 3.99976 4.01166 4.07130 4.16005 4.17416 4.36441 4.51044 4.53081 4.63448 4.64616 4.70031 4.71212 4.73792 4.75778 4.82188 4.86671 4.87196 4.90544 4.97461 5.01613 5.03113 5.06526 5.08901 5.18904 5.26559 5.38188 5.38870 5.41424 5.44949 5.46059 5.54379 5.58127 5.65586 5.92549 5.98948 6.12849 6.75514 6.78813 6.95927 7.28887 7.44611 7.54016 8.89101 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016937 B = 0.002527 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.783376 B =11075.575664 C =11805.658254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 C -0.146 4.146 4 C 0.140 3.860 5 N -0.730 5.730 6 C 0.702 3.298 7 O -0.631 6.631 8 N -0.623 5.623 9 C 0.107 3.893 10 C -0.123 4.123 11 C -0.097 4.097 12 C -0.106 4.106 13 H 0.103 0.897 14 C 0.501 3.499 15 O -0.595 6.595 16 N -0.598 5.598 17 C 0.086 3.914 18 C 0.260 3.740 19 H 0.015 0.985 20 C -0.129 4.129 21 C -0.538 4.538 22 H 0.060 0.940 23 C 0.014 3.986 24 N -0.918 5.918 25 Si 0.965 3.035 26 H -0.269 1.269 27 H -0.284 1.284 28 H -0.269 1.269 29 C 0.137 3.863 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.409 0.591 40 H 0.081 0.919 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.060 0.940 50 H 0.021 0.979 51 H 0.046 0.954 52 H 0.265 0.735 53 H 0.096 0.904 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.197 19.789 -23.882 31.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.203 4.203 4 C 0.016 3.984 5 N -0.389 5.389 6 C 0.403 3.597 7 O -0.512 6.512 8 N -0.360 5.360 9 C -0.015 4.015 10 C -0.161 4.161 11 C -0.135 4.135 12 C -0.128 4.128 13 H 0.121 0.879 14 C 0.289 3.711 15 O -0.477 6.477 16 N -0.328 5.328 17 C -0.057 4.057 18 C 0.159 3.841 19 H 0.033 0.967 20 C -0.187 4.187 21 C -0.577 4.577 22 H 0.079 0.921 23 C -0.186 4.186 24 N -0.557 5.557 25 Si 0.790 3.210 26 H -0.195 1.195 27 H -0.210 1.210 28 H -0.194 1.194 29 C 0.013 3.987 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.249 0.751 40 H 0.100 0.900 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.097 0.903 48 H 0.089 0.911 49 H 0.079 0.921 50 H 0.041 0.959 51 H 0.065 0.935 52 H 0.074 0.926 53 H 0.114 0.886 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.806 19.379 -23.185 30.272 hybrid contribution -0.526 -0.702 1.141 1.439 sum -2.332 18.677 -22.044 28.986 Atomic orbital electron populations 1.21876 0.94185 1.02193 1.02345 1.21310 0.96748 0.96950 0.96684 1.21772 1.01315 0.94588 1.02669 1.21354 0.99251 0.78874 0.98926 1.45166 1.60645 1.09422 1.23671 1.16030 0.79141 0.81147 0.83386 1.90905 1.50755 1.76754 1.32826 1.47243 1.68019 1.04991 1.15720 1.21961 0.95820 0.99008 0.84742 1.21927 0.97450 0.97340 0.99377 1.21315 1.01503 0.97791 0.92902 1.21625 1.00030 0.96192 0.94968 0.87923 1.21118 0.76666 0.89700 0.83579 1.90615 1.55062 1.20636 1.81368 1.48264 1.63501 1.08616 1.12377 1.21852 1.01163 0.79893 1.02791 1.18558 0.93119 0.87376 0.85092 0.96675 1.21832 0.96402 1.00871 0.99618 1.21572 1.24456 1.09466 1.02187 0.92137 1.25763 0.96927 0.94518 1.01392 1.70062 1.39839 1.13179 1.32606 0.85438 0.78938 0.77541 0.79074 1.19480 1.21014 1.19399 1.21446 0.94616 0.91887 0.90746 0.92333 0.93248 0.91188 0.89232 0.92369 0.90935 0.92740 0.93063 0.92738 0.75127 0.90035 0.87349 0.87389 0.90848 0.91951 0.92235 0.92009 0.90343 0.91106 0.92126 0.95947 0.93475 0.92637 0.88579 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.07 71.98 0.65 -0.44 16 2 C -0.10 -0.80 2.96 -10.79 -0.03 -0.83 16 3 C -0.15 -1.10 9.19 71.98 0.66 -0.44 16 4 C 0.14 2.08 5.07 86.38 0.44 2.52 16 5 N -0.73 -11.37 5.18 -478.51 -2.48 -13.85 16 6 C 0.70 17.03 8.29 179.05 1.48 18.52 16 7 O -0.63 -21.26 15.79 -3.99 -0.06 -21.32 16 8 N -0.62 -13.41 2.97 -836.91 -2.49 -15.89 16 9 C 0.11 1.37 6.43 86.36 0.55 1.93 16 10 C -0.12 -1.74 6.08 30.68 0.19 -1.55 16 11 C -0.10 -2.40 4.46 30.62 0.14 -2.27 16 12 C -0.11 -3.17 1.87 -11.46 -0.02 -3.19 16 13 H 0.10 2.91 7.40 -2.39 -0.02 2.90 16 14 C 0.50 21.33 7.08 87.66 0.62 21.95 16 15 O -0.60 -30.50 15.31 -3.05 -0.05 -30.55 16 16 N -0.60 -26.65 2.75 -826.79 -2.28 -28.93 16 17 C 0.09 3.09 7.73 127.77 0.99 4.08 16 18 C 0.26 14.06 2.54 44.24 0.11 14.17 16 19 H 0.02 0.97 6.90 -2.39 -0.02 0.96 16 20 C -0.13 -6.44 9.08 71.98 0.65 -5.79 16 21 C -0.54 -30.20 8.02 25.60 0.21 -29.99 16 22 H 0.06 3.30 7.15 -2.91 -0.02 3.28 16 23 C 0.01 0.77 5.31 84.66 0.45 1.22 16 24 N -0.92 -54.46 11.71 21.45 0.25 -54.21 16 25 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 29 C 0.14 3.80 5.27 86.36 0.46 4.26 16 30 H 0.06 0.39 7.18 -2.39 -0.02 0.37 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.41 3.70 5.16 -92.71 -0.48 3.22 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.11 0.66 5.59 -2.38 -0.01 0.65 16 42 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 1.66 8.13 -2.39 -0.02 1.64 16 45 H 0.06 1.66 8.07 -2.39 -0.02 1.64 16 46 H 0.06 2.08 7.07 -2.39 -0.02 2.06 16 47 H 0.08 2.46 5.95 -2.39 -0.01 2.45 16 48 H 0.07 2.70 6.93 -2.39 -0.02 2.68 16 49 H 0.06 3.32 6.45 -2.39 -0.02 3.31 16 50 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.05 2.15 7.59 -2.39 -0.02 2.13 16 52 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 53 H 0.10 2.99 3.63 -2.39 -0.01 2.98 16 54 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -77.38 410.37 2.88 -74.50 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.41 Total: 19.82 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: 7.55 Total: 24.14 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -6.99 Total: -112.88 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -0.11 Total: -51.87 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -77.38 2.88 -74.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132889378.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.656 kcal (2) G-P(sol) polarization free energy of solvation -77.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds