Wall clock time and date at job start Sat Apr 11 2020 05:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47218 * 2 1 4 4 C 1.52998 * 109.46952 * 119.99990 * 2 1 3 5 5 C 1.52999 * 109.47259 * 297.38715 * 4 2 1 6 6 N 1.46499 * 109.47290 * 185.06000 * 5 4 2 7 7 C 1.34776 * 119.99960 * 180.02562 * 6 5 4 8 8 O 1.21344 * 120.00340 * 359.97438 * 7 6 5 9 9 C 1.49452 * 119.99657 * 180.02562 * 7 6 5 10 10 O 1.21345 * 120.00464 * 359.97438 * 9 7 6 11 11 N 1.34784 * 119.99759 * 179.97438 * 9 7 6 12 12 C 1.46502 * 119.99985 * 179.97438 * 11 9 7 13 13 C 1.53000 * 109.47087 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.47085 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.46931 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00561 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99888 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99997 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00158 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46769 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46880 * 120.00330 * 19 17 15 22 22 H 1.48498 * 109.47326 * 240.00412 * 19 17 15 23 23 N 1.46900 * 109.46987 * 239.99999 * 2 1 3 24 24 C 1.46840 * 111.00019 * 62.13863 * 23 2 1 25 25 C 1.53040 * 109.52432 * 185.83583 * 24 23 2 26 26 C 1.53109 * 109.27847 * 300.82053 * 25 24 23 27 27 C 1.53118 * 109.21298 * 57.62090 * 26 25 24 28 28 C 1.46846 * 110.99687 * 186.34516 * 23 2 1 29 29 H 1.09007 * 109.47109 * 300.00142 * 1 2 3 30 30 H 1.09001 * 109.47105 * 59.99779 * 1 2 3 31 31 H 1.08994 * 109.47095 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47480 * 57.38644 * 4 2 1 33 33 H 1.08999 * 109.47498 * 177.38767 * 4 2 1 34 34 H 1.09005 * 109.47370 * 305.06206 * 5 4 2 35 35 H 1.08997 * 109.47166 * 65.05716 * 5 4 2 36 36 H 0.96998 * 119.99842 * 0.02562 * 6 5 4 37 37 H 0.96998 * 120.00095 * 0.02562 * 11 9 7 38 38 H 1.08992 * 109.47331 * 300.00702 * 12 11 9 39 39 H 1.09003 * 109.46704 * 60.00841 * 12 11 9 40 40 H 1.08992 * 109.47141 * 300.00870 * 13 12 11 41 41 H 1.09003 * 109.46766 * 60.00752 * 13 12 11 42 42 H 1.09002 * 109.47122 * 300.00293 * 14 13 12 43 43 H 1.08997 * 109.47160 * 60.00241 * 14 13 12 44 44 H 0.97000 * 120.00534 * 179.97438 * 18 17 15 45 45 H 1.09006 * 109.46755 * 65.82233 * 24 23 2 46 46 H 1.09006 * 109.45663 * 305.84971 * 24 23 2 47 47 H 1.09000 * 109.50295 * 180.87280 * 25 24 23 48 48 H 1.09002 * 109.49988 * 60.76373 * 25 24 23 49 49 H 1.09001 * 109.52413 * 177.55796 * 26 25 24 50 50 H 1.09002 * 109.52505 * 297.68701 * 26 25 24 51 51 H 1.08997 * 109.50659 * 62.31706 * 27 26 25 52 52 H 1.09005 * 109.50600 * 182.43708 * 27 26 25 53 53 H 1.08996 * 109.46637 * 294.17538 * 28 23 2 54 54 H 1.09000 * 109.46076 * 54.15753 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5844 0.0370 2.4976 6 7 2.1722 -0.5835 3.6875 7 6 1.9079 -0.0809 4.9098 8 8 1.1835 0.8858 5.0247 9 6 2.5080 -0.7135 6.1235 10 8 3.2329 -1.6799 6.0086 11 7 2.2442 -0.2106 7.3459 12 6 2.8320 -0.8310 8.5358 13 6 2.3758 -0.0732 9.7842 14 6 2.9902 -0.7208 11.0268 15 6 2.5405 0.0253 12.2564 16 1 1.8819 0.8760 12.1613 17 6 2.9689 -0.3788 13.5031 18 7 3.7704 -1.4149 13.6191 19 14 2.4119 0.5464 15.0274 20 1 1.5205 1.6653 14.6290 21 1 1.6743 -0.3780 15.9255 22 1 3.5978 1.0870 15.7392 23 7 2.0197 -0.6925 -1.1994 24 6 1.5910 0.0022 -2.4200 25 6 1.9926 -0.8219 -3.6454 26 6 3.5118 -1.0122 -3.6509 27 6 3.9390 -1.6934 -2.3478 28 6 3.4797 -0.8447 -1.1600 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6389 -1.7345 1.2730 33 1 3.1290 -0.7620 1.2262 34 1 1.9095 1.0753 2.4310 35 1 0.4973 0.0005 2.5683 36 1 2.7516 -1.3559 3.5956 37 1 1.6645 0.5617 7.4378 38 1 2.5070 -1.8692 8.6023 39 1 3.9191 -0.7944 8.4651 40 1 2.7005 0.9651 9.7177 41 1 1.2887 -0.1102 9.8547 42 1 2.6659 -1.7593 11.0933 43 1 4.0773 -0.6835 10.9561 44 1 4.0721 -1.6990 14.4961 45 1 2.0691 0.9807 -2.4680 46 1 0.5083 0.1274 -2.4054 47 1 1.6880 -0.2985 -4.5517 48 1 1.5039 -1.7954 -3.6052 49 1 3.7978 -1.6353 -4.4984 50 1 4.0003 -0.0412 -3.7314 51 1 3.4819 -2.6810 -2.2866 52 1 5.0244 -1.7922 -2.3276 53 1 3.9489 0.1377 -1.2138 54 1 3.7687 -1.3348 -0.2303 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343298438.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:03 Heat of formation + Delta-G solvation = -119.142210 kcal Electronic energy + Delta-G solvation = -28522.932715 eV Core-core repulsion = 24492.522724 eV Total energy + Delta-G solvation = -4030.409990 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.73923 -40.39822 -39.65718 -37.40222 -36.99805 -35.49731 -35.04385 -33.04184 -32.13248 -31.87401 -29.53372 -28.85280 -26.64480 -25.53200 -24.60698 -23.74552 -23.11876 -22.36664 -21.63416 -20.92375 -20.58962 -19.45377 -18.52312 -18.05021 -17.47876 -17.31629 -16.66466 -16.53474 -16.35112 -16.00394 -15.94501 -15.81777 -15.25676 -15.12215 -14.95004 -14.61251 -14.43297 -14.29996 -14.23534 -13.94259 -13.77076 -13.63564 -13.50322 -12.92124 -12.79672 -12.77912 -12.72705 -12.55011 -12.37954 -12.37030 -12.11698 -12.07387 -11.91335 -11.70236 -11.56480 -11.54153 -11.21901 -11.16990 -11.05430 -10.70904 -10.55104 -10.36295 -10.26701 -9.25579 -8.19309 -6.30095 0.29812 1.27075 1.41890 1.42643 1.55504 2.09765 2.41788 2.58489 2.88292 3.14883 3.39757 3.78404 3.85027 3.87769 3.98743 4.07799 4.08531 4.12936 4.18470 4.31457 4.37963 4.42305 4.49964 4.52834 4.55621 4.59977 4.69585 4.80273 4.86626 4.88010 4.91858 4.92782 4.92917 5.02385 5.05862 5.12033 5.14556 5.15507 5.21509 5.23647 5.24940 5.30046 5.40987 5.49984 5.52170 5.71143 5.84862 5.87693 6.17327 6.18620 6.23301 6.32106 6.69239 6.87062 6.90066 7.39448 8.92800 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.037164 B = 0.001321 C = 0.001288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.229055 B =21186.789285 C =21733.727467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.088 3.912 3 H 0.041 0.959 4 C -0.120 4.120 5 C 0.119 3.881 6 N -0.688 5.688 7 C 0.514 3.486 8 O -0.541 6.541 9 C 0.501 3.499 10 O -0.548 6.548 11 N -0.687 5.687 12 C 0.127 3.873 13 C -0.106 4.106 14 C 0.024 3.976 15 C -0.542 4.542 16 H 0.064 0.936 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.964 3.036 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.280 1.280 23 N -0.539 5.539 24 C 0.051 3.949 25 C -0.115 4.115 26 C -0.122 4.122 27 C -0.116 4.116 28 C 0.046 3.954 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.420 0.580 37 H 0.419 0.581 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.067 0.933 42 H -0.003 1.003 43 H -0.003 1.003 44 H 0.263 0.737 45 H 0.028 0.972 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.056 0.944 51 H 0.065 0.935 52 H 0.072 0.928 53 H 0.028 0.972 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 2.609 -38.197 38.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 H 0.059 0.941 4 C -0.158 4.158 5 C -0.004 4.004 6 N -0.341 5.341 7 C 0.294 3.706 8 O -0.418 6.418 9 C 0.282 3.718 10 O -0.426 6.426 11 N -0.339 5.339 12 C 0.004 3.996 13 C -0.144 4.144 14 C -0.013 4.013 15 C -0.580 4.580 16 H 0.082 0.918 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.789 3.211 20 H -0.184 1.184 21 H -0.205 1.205 22 H -0.205 1.205 23 N -0.264 5.264 24 C -0.077 4.077 25 C -0.152 4.152 26 C -0.160 4.160 27 C -0.154 4.154 28 C -0.081 4.081 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.257 0.743 37 H 0.257 0.743 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.015 0.985 43 H 0.015 0.985 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.101 0.899 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.087 0.913 50 H 0.075 0.925 51 H 0.084 0.916 52 H 0.091 0.909 53 H 0.046 0.954 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.331 2.055 -38.101 38.401 hybrid contribution 0.429 0.937 1.145 1.541 sum -3.902 2.992 -36.955 37.281 Atomic orbital electron populations 1.21952 0.93498 1.02783 1.02326 1.21468 0.96315 0.95246 0.89071 0.94071 1.21854 1.02111 1.00391 0.91451 1.21617 0.98961 0.97322 0.82493 1.45753 1.49691 1.33820 1.04814 1.19917 0.81709 0.83959 0.85010 1.90760 1.37367 1.26937 1.86735 1.20351 0.82020 0.84221 0.85249 1.90750 1.37773 1.27279 1.86805 1.45889 1.49243 1.33601 1.05156 1.21480 0.98052 0.97184 0.82892 1.21643 1.00916 0.99445 0.92410 1.18941 0.95026 0.95173 0.92210 1.21711 1.29344 1.14540 0.92389 0.91790 1.25961 0.95107 0.95975 1.02752 1.70100 1.35257 1.27276 1.24704 0.85406 0.78208 0.78714 0.78758 1.18436 1.20550 1.20549 1.61975 1.11705 1.50978 1.01741 1.22184 1.00996 0.94874 0.89601 1.21569 0.96058 1.00674 0.96935 1.21588 0.95996 1.00606 0.97813 1.21579 1.00698 0.99243 0.93868 1.22241 0.87206 0.98757 0.99933 0.91516 0.91971 0.91852 0.89723 0.90100 0.91074 0.90367 0.74277 0.74343 0.91704 0.91706 0.91466 0.91452 0.98499 0.98495 0.92802 0.95396 0.89920 0.90690 0.91619 0.91269 0.92502 0.91619 0.90928 0.95406 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.74 71.98 0.63 -0.78 16 2 C 0.09 0.90 2.18 44.92 0.10 1.00 16 3 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 4 C -0.12 -1.21 4.49 30.59 0.14 -1.07 16 5 C 0.12 1.62 5.24 86.38 0.45 2.08 16 6 N -0.69 -12.31 5.55 -464.42 -2.58 -14.88 16 7 C 0.51 12.65 7.89 87.27 0.69 13.34 16 8 O -0.54 -15.31 16.48 -3.23 -0.05 -15.36 16 9 C 0.50 14.39 7.89 87.27 0.69 15.08 16 10 O -0.55 -18.04 16.48 -3.23 -0.05 -18.10 16 11 N -0.69 -19.89 5.55 -464.40 -2.58 -22.47 16 12 C 0.13 4.31 5.67 86.38 0.49 4.80 16 13 C -0.11 -4.07 5.27 30.59 0.16 -3.91 16 14 C 0.02 1.24 4.97 29.85 0.15 1.39 16 15 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 16 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 17 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 18 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 19 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 N -0.54 -5.96 4.53 -871.10 -3.94 -9.90 16 24 C 0.05 0.50 5.25 86.33 0.45 0.96 16 25 C -0.11 -0.99 6.09 30.64 0.19 -0.80 16 26 C -0.12 -1.05 6.00 30.67 0.18 -0.86 16 27 C -0.12 -1.09 6.10 30.65 0.19 -0.91 16 28 C 0.05 0.49 5.08 86.33 0.44 0.92 16 29 H 0.07 0.62 6.61 -2.38 -0.02 0.61 16 30 H 0.06 0.54 6.33 -2.39 -0.02 0.52 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 0.76 6.04 -2.39 -0.01 0.74 16 34 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.08 1.11 6.76 -2.39 -0.02 1.09 16 36 H 0.42 6.60 7.94 -92.71 -0.74 5.87 16 37 H 0.42 10.89 7.94 -92.71 -0.74 10.16 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 45 H 0.03 0.30 8.14 -2.38 -0.02 0.28 16 46 H 0.08 0.74 6.07 -2.38 -0.01 0.73 16 47 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 48 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 51 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 53 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 54 H 0.08 0.83 5.81 -2.39 -0.01 0.81 16 Total: -1.00 -67.45 424.27 -1.84 -69.29 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -0.58 Total: 19.94 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: 5.64 Total: 1.77 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -8.81 Total: -103.37 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.11 Total: -33.46 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -67.45 -1.84 -69.29 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343298438.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.853 kcal (2) G-P(sol) polarization free energy of solvation -67.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds