Wall clock time and date at job start Sat Apr 11 2020 05:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 C 1.52993 * 109.47602 * 239.99741 * 2 1 3 5 5 N 1.46895 * 109.47819 * 185.00126 * 4 2 1 6 6 C 1.46850 * 110.99953 * 294.21474 * 5 4 2 7 7 C 1.53034 * 109.52284 * 174.15423 * 6 5 4 8 8 C 1.53120 * 109.27772 * 59.18148 * 7 6 5 9 9 C 1.53123 * 109.15848 * 302.33939 * 8 7 6 10 10 C 1.46841 * 111.00580 * 170.00033 * 5 4 2 11 11 N 1.46506 * 109.46691 * 119.99739 * 2 1 3 12 12 C 1.34773 * 119.99969 * 274.72265 * 11 2 1 13 13 O 1.21348 * 120.00453 * 0.02562 * 12 11 2 14 14 C 1.49456 * 119.99965 * 180.02562 * 12 11 2 15 15 O 1.21348 * 119.99585 * 359.97438 * 14 12 11 16 16 N 1.34773 * 119.99966 * 180.02562 * 14 12 11 17 17 C 1.46496 * 119.99975 * 179.97438 * 16 14 12 18 18 C 1.52995 * 109.47522 * 179.97438 * 17 16 14 19 19 C 1.52999 * 109.47139 * 300.00595 * 18 17 16 20 20 C 1.53008 * 109.46927 * 59.99952 * 18 17 16 21 21 C 1.50696 * 109.47633 * 180.02562 * 18 17 16 22 22 H 1.08004 * 119.99951 * 0.02562 * 21 18 17 23 23 C 1.37880 * 120.00237 * 179.97438 * 21 18 17 24 24 N 1.31515 * 119.99891 * 0.02562 * 23 21 18 25 25 Si 1.86800 * 119.99895 * 179.97438 * 23 21 18 26 26 H 1.48500 * 109.47213 * 90.00589 * 25 23 21 27 27 H 1.48504 * 109.47159 * 210.00248 * 25 23 21 28 28 H 1.48502 * 109.47154 * 330.00339 * 25 23 21 29 29 H 1.09001 * 109.47659 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47574 * 300.00469 * 1 2 3 31 31 H 1.09002 * 109.46832 * 60.00240 * 1 2 3 32 32 H 1.09002 * 109.47378 * 305.00625 * 4 2 1 33 33 H 1.09004 * 109.46895 * 64.99844 * 4 2 1 34 34 H 1.08997 * 109.46066 * 294.17500 * 6 5 4 35 35 H 1.09002 * 109.46144 * 54.13627 * 6 5 4 36 36 H 1.09000 * 109.50686 * 299.23510 * 7 6 5 37 37 H 1.09001 * 109.50178 * 179.11403 * 7 6 5 38 38 H 1.09003 * 109.52323 * 182.44159 * 8 7 6 39 39 H 1.08998 * 109.52827 * 62.24704 * 8 7 6 40 40 H 1.08991 * 109.50527 * 297.71738 * 9 8 7 41 41 H 1.09004 * 109.50338 * 177.59520 * 9 8 7 42 42 H 1.09009 * 109.46175 * 305.85773 * 10 5 4 43 43 H 1.08998 * 109.46090 * 65.82098 * 10 5 4 44 44 H 0.97005 * 119.99811 * 95.00317 * 11 2 1 45 45 H 0.97004 * 120.00022 * 0.02562 * 16 14 12 46 46 H 1.08999 * 109.47567 * 300.00249 * 17 16 14 47 47 H 1.09010 * 109.47207 * 59.99635 * 17 16 14 48 48 H 1.09002 * 109.47295 * 59.99438 * 19 18 17 49 49 H 1.09004 * 109.47430 * 180.02562 * 19 18 17 50 50 H 1.09001 * 109.47163 * 299.99520 * 19 18 17 51 51 H 1.08999 * 109.46477 * 60.00443 * 20 18 17 52 52 H 1.09004 * 109.47049 * 179.97438 * 20 18 17 53 53 H 1.08992 * 109.47193 * 300.00378 * 20 18 17 54 54 H 0.97000 * 119.99447 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5040 -0.8267 -1.1903 6 6 4.1306 0.4993 -1.2657 7 6 5.6405 0.3641 -1.0557 8 6 6.2202 -0.5569 -2.1329 9 6 5.5169 -1.9153 -2.0642 10 6 4.0106 -1.7141 -2.2449 11 7 2.0182 -0.6906 1.1963 12 6 2.1522 -0.0169 2.3558 13 8 1.8680 1.1617 2.4092 14 6 2.6508 -0.7212 3.5760 15 8 2.9346 -1.8999 3.5228 16 7 2.7843 -0.0476 4.7357 17 6 3.2725 -0.7382 5.9319 18 6 3.3305 0.2466 7.1014 19 6 4.2783 1.3962 6.7535 20 6 1.9307 0.8031 7.3694 21 6 3.8333 -0.4636 8.3317 22 1 4.0867 -1.5124 8.2842 23 6 3.9710 0.2258 9.5178 24 7 3.6630 1.5031 9.5756 25 14 4.5936 -0.6548 11.0431 26 1 6.0742 -0.5563 11.1018 27 1 4.0072 -0.0240 12.2529 28 1 4.1944 -2.0841 10.9871 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1583 -2.1369 34 1 3.9378 0.9369 -2.2452 35 1 3.7125 1.1430 -0.4918 36 1 5.8344 -0.0606 -0.0708 37 1 6.1072 1.3465 -1.1274 38 1 7.2883 -0.6907 -1.9614 39 1 6.0608 -0.1135 -3.1157 40 1 5.7089 -2.3759 -1.0952 41 1 5.8954 -2.5615 -2.8563 42 1 3.5054 -2.6780 -2.1823 43 1 3.8184 -1.2662 -3.2198 44 1 2.2489 -1.6318 1.1527 45 1 2.5564 0.8943 4.7785 46 1 2.5975 -1.5574 6.1795 47 1 4.2700 -1.1343 5.7411 48 1 3.9150 1.9100 5.8635 49 1 4.3200 2.0976 7.5869 50 1 5.2756 0.9998 6.5626 51 1 1.2555 -0.0159 7.6172 52 1 1.9719 1.5043 8.2029 53 1 1.5674 1.3169 6.4794 54 1 3.7603 1.9881 10.4099 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421565271.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:09 Heat of formation + Delta-G solvation = -104.300695 kcal Electronic energy + Delta-G solvation = -30838.963502 eV Core-core repulsion = 26809.197088 eV Total energy + Delta-G solvation = -4029.766414 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.71501 -40.28083 -39.48780 -38.16899 -37.03833 -35.08290 -34.02042 -32.73030 -31.90508 -31.65077 -27.93126 -27.59058 -27.36391 -27.19569 -25.18680 -24.17342 -23.77233 -21.80461 -21.36174 -20.69919 -20.57735 -19.55482 -18.04754 -17.71038 -17.21445 -17.00515 -16.71373 -16.59735 -16.10064 -15.72879 -15.45911 -15.35970 -15.23826 -14.96239 -14.74253 -14.53528 -14.40173 -14.24391 -14.04744 -13.73912 -13.46650 -13.21514 -13.18462 -13.12809 -12.86436 -12.76167 -12.69745 -12.60440 -12.56201 -12.27640 -12.12999 -12.11662 -12.00900 -11.62673 -11.50746 -11.29432 -11.26896 -11.14796 -10.75293 -10.57572 -10.40717 -10.21664 -10.08423 -9.24868 -8.01353 -6.17939 0.43552 1.43265 1.44616 1.48151 1.56010 2.23174 2.46005 2.73610 2.93627 3.22467 3.54912 3.68620 3.88110 3.96240 4.05806 4.15652 4.28162 4.32409 4.35591 4.46692 4.47462 4.53368 4.62916 4.67864 4.69426 4.71786 4.72931 4.82858 4.92339 4.93015 4.99461 5.03785 5.04677 5.06785 5.06992 5.16986 5.22968 5.23998 5.26522 5.31433 5.37139 5.47680 5.48648 5.64508 5.67547 6.04542 6.10942 6.12453 6.17596 6.19037 6.41278 6.47826 6.82212 6.88140 7.04559 7.50056 8.98039 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016482 B = 0.002372 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.434964 B =11803.815271 C =12578.125407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.141 3.859 3 H 0.076 0.924 4 C 0.052 3.948 5 N -0.551 5.551 6 C 0.057 3.943 7 C -0.119 4.119 8 C -0.117 4.117 9 C -0.118 4.118 10 C 0.059 3.941 11 N -0.665 5.665 12 C 0.514 3.486 13 O -0.548 6.548 14 C 0.496 3.504 15 O -0.552 6.552 16 N -0.683 5.683 17 C 0.144 3.856 18 C 0.052 3.948 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.527 4.527 22 H 0.051 0.949 23 C 0.026 3.974 24 N -0.902 5.902 25 Si 0.949 3.051 26 H -0.279 1.279 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.072 0.928 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.041 0.959 44 H 0.418 0.582 45 H 0.412 0.588 46 H 0.053 0.947 47 H 0.052 0.948 48 H 0.028 0.972 49 H 0.064 0.936 50 H 0.022 0.978 51 H 0.023 0.977 52 H 0.064 0.936 53 H 0.029 0.971 54 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.291 -3.364 -27.742 28.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.037 3.963 3 H 0.094 0.906 4 C -0.076 4.076 5 N -0.276 5.276 6 C -0.071 4.071 7 C -0.157 4.157 8 C -0.155 4.155 9 C -0.155 4.155 10 C -0.068 4.068 11 N -0.317 5.317 12 C 0.294 3.706 13 O -0.427 6.427 14 C 0.277 3.723 15 O -0.431 6.431 16 N -0.335 5.335 17 C 0.021 3.979 18 C 0.051 3.949 19 C -0.181 4.181 20 C -0.182 4.182 21 C -0.565 4.565 22 H 0.069 0.931 23 C -0.173 4.173 24 N -0.540 5.540 25 Si 0.775 3.225 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.198 1.198 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.059 0.941 44 H 0.255 0.745 45 H 0.250 0.750 46 H 0.071 0.929 47 H 0.070 0.930 48 H 0.047 0.953 49 H 0.083 0.917 50 H 0.041 0.959 51 H 0.043 0.957 52 H 0.082 0.918 53 H 0.048 0.952 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.173 -3.424 -27.175 27.476 hybrid contribution 0.286 0.131 0.662 0.733 sum -1.887 -3.293 -26.513 26.783 Atomic orbital electron populations 1.22124 0.93343 1.03336 1.02947 1.21267 0.94810 0.96948 0.83239 0.90594 1.22428 0.87510 1.02213 0.95419 1.61841 1.05198 1.11964 1.48625 1.22056 0.94986 0.90091 0.99934 1.21571 0.94780 1.00083 0.99287 1.21553 0.99750 0.95606 0.98590 1.21590 0.94520 0.97234 1.02199 1.22104 0.95805 0.96993 0.91947 1.45617 1.63314 1.14976 1.07791 1.19923 0.79052 0.86602 0.85025 1.90731 1.50639 1.16064 1.85233 1.20465 0.79664 0.87004 0.85213 1.90705 1.50767 1.16161 1.85420 1.46060 1.63287 1.15032 1.09129 1.21521 0.97618 0.95477 0.83285 1.18362 0.93479 0.92119 0.90941 1.21704 0.97569 0.99585 0.99252 1.21706 0.96422 0.99901 1.00135 1.21252 1.44302 0.96130 0.94843 0.93075 1.25502 0.95354 0.95501 1.00975 1.69929 1.48601 1.08611 1.26875 0.85704 0.78368 0.78865 0.79538 1.20500 1.21021 1.19753 0.90920 0.93814 0.89159 0.88284 0.91271 0.93895 0.92261 0.93297 0.91221 0.91741 0.91441 0.92638 0.90114 0.89795 0.94054 0.74503 0.75035 0.92853 0.92971 0.95269 0.91734 0.95865 0.95743 0.91751 0.95209 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 9.49 71.98 0.68 -1.65 16 2 C 0.14 2.44 2.36 44.99 0.11 2.55 16 3 H 0.08 1.58 6.09 -2.39 -0.01 1.57 16 4 C 0.05 0.63 4.52 86.30 0.39 1.02 16 5 N -0.55 -8.43 4.38 -896.39 -3.93 -12.36 16 6 C 0.06 0.95 5.29 86.32 0.46 1.41 16 7 C -0.12 -2.06 6.09 30.65 0.19 -1.88 16 8 C -0.12 -1.61 6.00 30.68 0.18 -1.43 16 9 C -0.12 -1.56 6.09 30.65 0.19 -1.37 16 10 C 0.06 0.71 5.46 86.33 0.47 1.18 16 11 N -0.67 -15.27 4.79 -443.87 -2.13 -17.40 16 12 C 0.51 15.74 7.86 87.27 0.69 16.42 16 13 O -0.55 -18.79 16.14 -3.24 -0.05 -18.84 16 14 C 0.50 17.72 7.89 87.27 0.69 18.41 16 15 O -0.55 -21.54 16.48 -3.24 -0.05 -21.59 16 16 N -0.68 -25.84 4.95 -464.42 -2.30 -28.14 16 17 C 0.14 6.16 4.50 86.38 0.39 6.55 16 18 C 0.05 2.44 0.50 -52.93 -0.03 2.42 16 19 C -0.12 -5.74 8.08 71.98 0.58 -5.16 16 20 C -0.12 -5.74 8.08 71.98 0.58 -5.16 16 21 C -0.53 -27.83 8.01 25.60 0.21 -27.63 16 22 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 23 C 0.03 1.40 5.15 84.66 0.44 1.83 16 24 N -0.90 -48.86 9.35 21.45 0.20 -48.66 16 25 Si 0.95 42.64 29.54 68.60 2.03 44.67 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 27 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 28 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 32 H 0.10 0.92 7.99 -2.39 -0.02 0.90 16 33 H 0.07 0.63 8.12 -2.38 -0.02 0.61 16 34 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 1.20 6.32 -2.39 -0.02 1.19 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.08 0.87 8.02 -2.38 -0.02 0.85 16 43 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.42 9.22 8.07 -92.70 -0.75 8.47 16 45 H 0.41 15.27 5.63 -92.71 -0.52 14.75 16 46 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 48 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 49 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 50 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 53 H 0.03 1.21 6.86 -2.39 -0.02 1.20 16 54 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -60.71 416.61 -0.41 -61.13 By element: Atomic # 1 Polarization: 34.06 SS G_CDS: -0.38 Total: 33.67 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 6.20 Total: 7.51 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -8.15 Total: -106.55 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.11 Total: -40.43 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -60.71 -0.41 -61.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421565271.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.176 kcal (2) G-P(sol) polarization free energy of solvation -60.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds