Wall clock time and date at job start Sat Apr 11 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.46990 * 2 1 4 4 C 1.53002 * 109.47089 * 120.00400 * 2 1 3 5 5 N 1.46898 * 109.46800 * 175.83093 * 4 2 1 6 6 C 1.46842 * 110.99893 * 200.35338 * 5 4 2 7 7 C 1.53040 * 109.52508 * 174.16225 * 6 5 4 8 8 C 1.53120 * 109.27430 * 59.18173 * 7 6 5 9 9 C 1.53122 * 109.16194 * 302.34377 * 8 7 6 10 10 C 1.46853 * 110.99882 * 76.14775 * 5 4 2 11 11 N 1.46501 * 109.47012 * 240.00358 * 2 1 3 12 12 C 1.34776 * 120.00364 * 88.29388 * 11 2 1 13 13 O 1.21351 * 119.99781 * 359.97438 * 12 11 2 14 14 C 1.49447 * 120.00499 * 180.02562 * 12 11 2 15 15 O 1.21351 * 119.99720 * 359.97438 * 14 12 11 16 16 N 1.34776 * 120.00499 * 180.02562 * 14 12 11 17 17 C 1.46491 * 120.00339 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47101 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.46993 * 299.99535 * 18 17 16 20 20 C 1.52996 * 109.47382 * 60.00168 * 18 17 16 21 21 C 1.50702 * 109.46833 * 180.02562 * 18 17 16 22 22 H 1.08002 * 120.00174 * 359.97438 * 21 18 17 23 23 C 1.37878 * 119.99778 * 179.97438 * 21 18 17 24 24 N 1.31508 * 120.00187 * 359.97438 * 23 21 18 25 25 Si 1.86800 * 119.99948 * 180.02562 * 23 21 18 26 26 H 1.48493 * 109.47441 * 59.99991 * 25 23 21 27 27 H 1.48504 * 109.47225 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46908 * 299.99985 * 25 23 21 29 29 H 1.08996 * 109.47381 * 300.00056 * 1 2 3 30 30 H 1.08999 * 109.47413 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47068 * 59.99365 * 1 2 3 32 32 H 1.08995 * 109.46860 * 295.82883 * 4 2 1 33 33 H 1.08992 * 109.46648 * 55.83124 * 4 2 1 34 34 H 1.09004 * 109.46289 * 294.18082 * 6 5 4 35 35 H 1.09000 * 109.46436 * 54.14902 * 6 5 4 36 36 H 1.08996 * 109.50122 * 299.24324 * 7 6 5 37 37 H 1.08998 * 109.53557 * 179.13983 * 7 6 5 38 38 H 1.09006 * 109.51940 * 182.44313 * 8 7 6 39 39 H 1.08996 * 109.57797 * 62.28344 * 8 7 6 40 40 H 1.09001 * 109.50052 * 297.72043 * 9 8 7 41 41 H 1.08993 * 109.50212 * 177.59911 * 9 8 7 42 42 H 1.09002 * 109.45996 * 305.85287 * 10 5 4 43 43 H 1.09001 * 109.46204 * 65.81712 * 10 5 4 44 44 H 0.97002 * 119.99791 * 268.29601 * 11 2 1 45 45 H 0.97006 * 119.99323 * 359.97438 * 16 14 12 46 46 H 1.08998 * 109.47083 * 300.00084 * 17 16 14 47 47 H 1.09002 * 109.47451 * 59.99801 * 17 16 14 48 48 H 1.09007 * 109.46923 * 60.00339 * 19 18 17 49 49 H 1.09002 * 109.47113 * 180.02562 * 19 18 17 50 50 H 1.09006 * 109.47691 * 300.00393 * 19 18 17 51 51 H 1.08998 * 109.47302 * 59.99882 * 20 18 17 52 52 H 1.09002 * 109.47194 * 180.02562 * 20 18 17 53 53 H 1.09007 * 109.46853 * 299.99855 * 20 18 17 54 54 H 0.97003 * 120.00287 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5055 -0.8091 1.1998 6 6 3.9989 -1.8737 2.0827 7 6 5.5096 -2.0331 1.8969 8 6 6.2021 -0.7081 2.2278 9 6 5.6358 0.3935 1.3277 10 6 4.1215 0.4825 1.5300 11 7 2.0183 -0.6905 -1.1962 12 6 2.2102 -0.0036 -2.3398 13 8 1.9780 1.1868 -2.3787 14 6 2.7078 -0.7081 -3.5603 15 8 2.9395 -1.8987 -3.5215 16 7 2.9001 -0.0211 -4.7037 17 6 3.3884 -0.7116 -5.8999 18 6 3.5191 0.2898 -7.0492 19 6 2.1522 0.9117 -7.3417 20 6 4.5068 1.3904 -6.6569 21 6 4.0208 -0.4207 -8.2799 22 1 4.2263 -1.4805 -8.2456 23 6 4.2175 0.2821 -9.4496 24 7 3.9668 1.5724 -9.4916 25 14 4.8387 -0.5987 -10.9753 26 1 3.8795 -1.6666 -11.3555 27 1 4.9657 0.3733 -12.0909 28 1 6.1655 -1.2028 -10.6923 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 -0.8900 32 1 1.7390 -0.1662 2.1376 33 1 1.6169 -1.7251 1.2872 34 1 3.7859 -1.6136 3.1196 35 1 3.5016 -2.8113 1.8342 36 1 5.7223 -2.3067 0.8635 37 1 5.8785 -2.8129 2.5632 38 1 7.2741 -0.8044 2.0551 39 1 6.0229 -0.4532 3.2722 40 1 5.8504 0.1579 0.2853 41 1 6.0943 1.3475 1.5877 42 1 3.7130 1.2563 0.8799 43 1 3.9079 0.7316 2.5694 44 1 2.2035 -1.6422 -1.1652 45 1 2.7152 0.9306 -4.7346 46 1 4.3624 -1.1544 -5.6917 47 1 2.6850 -1.4961 -6.1792 48 1 1.7888 1.4255 -6.4516 49 1 2.2452 1.6248 -8.1608 50 1 1.4485 0.1275 -7.6212 51 1 5.4806 0.9473 -6.4485 52 1 4.5996 2.1041 -7.4755 53 1 4.1434 1.9042 -5.7668 54 1 4.1048 2.0668 -10.3147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421565272.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:12 Heat of formation + Delta-G solvation = -104.956552 kcal Electronic energy + Delta-G solvation = -30808.236440 eV Core-core repulsion = 26778.441586 eV Total energy + Delta-G solvation = -4029.794854 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.69475 -40.24136 -39.49194 -38.16642 -37.03395 -35.07984 -34.02551 -32.72890 -31.89653 -31.65478 -27.92940 -27.58987 -27.35891 -27.19009 -25.14818 -24.13713 -23.77947 -21.83576 -21.36415 -20.69728 -20.59077 -19.54892 -18.04611 -17.70589 -17.17429 -16.99017 -16.71311 -16.59942 -16.08116 -15.73819 -15.46472 -15.34742 -15.20609 -14.96839 -14.73566 -14.52238 -14.37822 -14.24451 -14.04744 -13.77461 -13.44183 -13.21849 -13.19412 -13.11917 -12.85554 -12.71619 -12.67891 -12.63148 -12.58483 -12.27184 -12.12908 -12.11732 -11.97636 -11.63020 -11.50595 -11.29344 -11.27270 -11.16908 -10.75634 -10.57248 -10.40253 -10.20420 -10.08027 -9.23459 -8.00976 -6.17758 0.44324 1.44043 1.46471 1.48341 1.54626 2.24065 2.46257 2.74664 2.93094 3.22711 3.55579 3.72474 3.88497 3.96235 4.06681 4.18023 4.30294 4.32966 4.35697 4.46641 4.47578 4.53658 4.62709 4.67879 4.69364 4.70293 4.73664 4.84340 4.92166 4.93066 4.99698 5.03792 5.05114 5.06856 5.07044 5.17018 5.23045 5.24156 5.27401 5.31545 5.38316 5.47759 5.48700 5.64609 5.67439 6.05111 6.10954 6.14266 6.18581 6.19109 6.41318 6.48216 6.82626 6.88413 7.05288 7.50180 8.98213 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016138 B = 0.002377 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.645295 B =11777.081243 C =12544.865562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.143 3.857 3 H 0.075 0.925 4 C 0.052 3.948 5 N -0.553 5.553 6 C 0.059 3.941 7 C -0.118 4.118 8 C -0.117 4.117 9 C -0.119 4.119 10 C 0.058 3.942 11 N -0.664 5.664 12 C 0.514 3.486 13 O -0.550 6.550 14 C 0.496 3.504 15 O -0.552 6.552 16 N -0.683 5.683 17 C 0.144 3.856 18 C 0.052 3.948 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.528 4.528 22 H 0.051 0.949 23 C 0.027 3.973 24 N -0.901 5.901 25 Si 0.949 3.051 26 H -0.275 1.275 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.045 0.955 44 H 0.417 0.583 45 H 0.412 0.588 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.029 0.971 49 H 0.064 0.936 50 H 0.023 0.977 51 H 0.022 0.978 52 H 0.064 0.936 53 H 0.028 0.972 54 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 -3.768 27.662 28.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.039 3.961 3 H 0.093 0.907 4 C -0.076 4.076 5 N -0.278 5.278 6 C -0.068 4.068 7 C -0.156 4.156 8 C -0.155 4.155 9 C -0.157 4.157 10 C -0.069 4.069 11 N -0.315 5.315 12 C 0.294 3.706 13 O -0.428 6.428 14 C 0.277 3.723 15 O -0.431 6.431 16 N -0.335 5.335 17 C 0.021 3.979 18 C 0.051 3.949 19 C -0.182 4.182 20 C -0.181 4.181 21 C -0.567 4.567 22 H 0.069 0.931 23 C -0.173 4.173 24 N -0.540 5.540 25 Si 0.775 3.225 26 H -0.201 1.201 27 H -0.211 1.211 28 H -0.201 1.201 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.254 0.746 45 H 0.250 0.750 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.048 0.952 49 H 0.083 0.917 50 H 0.042 0.958 51 H 0.041 0.959 52 H 0.083 0.917 53 H 0.047 0.953 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.897 -3.733 27.071 27.480 hybrid contribution 0.291 -0.022 -0.608 0.674 sum -2.606 -3.755 26.463 26.855 Atomic orbital electron populations 1.22128 0.93332 1.03343 1.02926 1.21246 0.94621 0.97017 0.83252 0.90686 1.22429 0.87419 1.02230 0.95561 1.61793 1.05819 1.05832 1.54370 1.22113 0.95781 0.94590 0.94322 1.21592 0.94649 0.97635 1.01753 1.21550 0.99793 0.94753 0.99396 1.21574 0.94865 0.99431 0.99849 1.22068 0.94969 0.90894 0.99010 1.45579 1.63551 1.13609 1.08799 1.19912 0.78916 0.86759 0.84976 1.90729 1.51857 1.15427 1.84788 1.20468 0.79538 0.87147 0.85167 1.90701 1.51929 1.15462 1.84984 1.46062 1.63505 1.13841 1.10117 1.21521 0.97572 0.95481 0.83322 1.18357 0.93415 0.92053 0.91045 1.21710 0.96436 0.99961 1.00063 1.21700 0.97614 0.99694 0.99076 1.21228 1.44778 0.94979 0.95691 0.93056 1.25499 0.95383 0.95487 1.00927 1.69918 1.48877 1.07565 1.27638 0.85764 0.78862 0.78380 0.79486 1.20057 1.21050 1.20095 0.89155 0.90885 0.93846 0.91013 0.88439 0.93941 0.89975 0.92876 0.90189 0.91814 0.91330 0.93435 0.90990 0.92105 0.93709 0.74639 0.75049 0.92989 0.92833 0.95232 0.91731 0.95756 0.95864 0.91737 0.95295 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.51 71.98 0.68 -1.61 16 2 C 0.14 2.48 2.65 44.99 0.12 2.60 16 3 H 0.08 1.60 6.33 -2.39 -0.02 1.58 16 4 C 0.05 0.62 4.58 86.30 0.40 1.02 16 5 N -0.55 -8.54 4.32 -896.37 -3.88 -12.42 16 6 C 0.06 0.74 5.42 86.33 0.47 1.21 16 7 C -0.12 -1.63 6.09 30.65 0.19 -1.45 16 8 C -0.12 -1.61 6.00 30.68 0.18 -1.43 16 9 C -0.12 -2.01 6.09 30.65 0.19 -1.83 16 10 C 0.06 0.94 5.29 86.32 0.46 1.40 16 11 N -0.66 -15.31 4.78 -443.87 -2.12 -17.43 16 12 C 0.51 15.88 7.88 87.27 0.69 16.57 16 13 O -0.55 -19.05 16.08 -3.25 -0.05 -19.10 16 14 C 0.50 17.81 7.89 87.27 0.69 18.50 16 15 O -0.55 -21.56 16.48 -3.25 -0.05 -21.62 16 16 N -0.68 -25.97 4.95 -464.43 -2.30 -28.27 16 17 C 0.14 6.18 4.50 86.38 0.39 6.57 16 18 C 0.05 2.46 0.50 -52.93 -0.03 2.44 16 19 C -0.12 -5.76 8.08 71.98 0.58 -5.18 16 20 C -0.12 -5.74 8.08 71.98 0.58 -5.16 16 21 C -0.53 -27.95 8.01 25.60 0.21 -27.74 16 22 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 23 C 0.03 1.42 5.15 84.66 0.44 1.86 16 24 N -0.90 -48.91 9.35 21.45 0.20 -48.71 16 25 Si 0.95 42.64 29.54 68.60 2.03 44.67 16 26 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 28 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 0.64 7.99 -2.39 -0.02 0.62 16 33 H 0.10 0.89 7.79 -2.39 -0.02 0.88 16 34 H 0.04 0.45 8.14 -2.38 -0.02 0.43 16 35 H 0.08 0.91 7.93 -2.39 -0.02 0.89 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.06 1.15 6.81 -2.39 -0.02 1.14 16 43 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.42 9.11 8.11 -92.71 -0.75 8.36 16 45 H 0.41 15.36 5.64 -92.70 -0.52 14.84 16 46 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 48 H 0.03 1.21 6.86 -2.38 -0.02 1.19 16 49 H 0.06 3.31 6.07 -2.39 -0.01 3.30 16 50 H 0.02 1.09 8.14 -2.38 -0.02 1.08 16 51 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 53 H 0.03 1.19 6.86 -2.38 -0.02 1.17 16 54 H 0.26 13.63 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -61.06 417.20 -0.34 -61.40 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.39 Total: 33.73 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 6.22 Total: 7.74 kcal Atomic # 7 Polarization: -98.72 SS G_CDS: -8.10 Total: -106.82 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -0.11 Total: -40.72 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -61.06 -0.34 -61.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421565272.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.554 kcal (2) G-P(sol) polarization free energy of solvation -61.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds