Wall clock time and date at job start Sat Apr 11 2020 05:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00189 * 2 1 4 4 O 1.21278 * 119.99644 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99808 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.46883 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47285 * 180.02562 * 6 5 3 8 8 C 1.53000 * 109.47285 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47417 * 179.97438 * 8 7 6 10 10 O 1.21289 * 119.99647 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00506 * 180.02562 * 9 8 7 12 12 C 1.46499 * 120.00353 * 179.97438 * 11 9 8 13 13 H 1.09009 * 109.46714 * 34.99995 * 12 11 9 14 14 C 1.52996 * 109.47552 * 275.00128 * 12 11 9 15 15 C 1.52993 * 109.47249 * 154.99632 * 12 11 9 16 16 C 1.53043 * 109.46189 * 300.03298 * 15 12 11 17 17 C 1.53193 * 109.31040 * 178.60015 * 16 15 12 18 18 N 1.46928 * 108.76897 * 54.65298 * 17 16 15 19 19 C 1.36940 * 120.62960 * 126.40304 * 18 17 16 20 20 H 1.07999 * 120.00088 * 332.60795 * 19 18 17 21 21 C 1.38808 * 119.99651 * 152.61192 * 19 18 17 22 22 N 1.31622 * 119.99979 * 159.34284 * 21 19 18 23 23 Si 1.86801 * 120.00262 * 339.34288 * 21 19 18 24 24 H 1.48495 * 109.47411 * 92.94328 * 23 21 19 25 25 H 1.48506 * 109.47139 * 212.94833 * 23 21 19 26 26 H 1.48503 * 109.46848 * 332.94377 * 23 21 19 27 27 C 1.46925 * 118.73843 * 306.38316 * 18 17 16 28 28 C 1.53044 * 109.46380 * 179.97438 * 15 12 11 29 29 H 1.09001 * 109.47508 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47038 * 299.99833 * 1 2 3 31 31 H 1.09000 * 109.47053 * 59.99215 * 1 2 3 32 32 H 0.97002 * 119.99936 * 180.02562 * 2 1 3 33 33 H 1.08993 * 109.47386 * 60.00987 * 5 3 2 34 34 H 1.08995 * 109.47649 * 300.00502 * 5 3 2 35 35 H 1.09003 * 109.47390 * 60.00382 * 6 5 3 36 36 H 1.09000 * 109.47357 * 300.00131 * 6 5 3 37 37 H 1.08999 * 109.47188 * 59.99609 * 7 6 5 38 38 H 1.09000 * 109.46882 * 300.00240 * 7 6 5 39 39 H 1.09006 * 109.46894 * 60.00191 * 8 7 6 40 40 H 1.09000 * 109.47357 * 299.99950 * 8 7 6 41 41 H 0.97005 * 119.99363 * 359.97438 * 11 9 8 42 42 H 1.09006 * 109.47082 * 59.99531 * 14 12 11 43 43 H 1.09007 * 109.46730 * 300.00414 * 14 12 11 44 44 H 1.08993 * 109.47682 * 179.97438 * 14 12 11 45 45 H 1.09000 * 109.45915 * 60.00489 * 15 12 11 46 46 H 1.09004 * 109.49724 * 298.55945 * 16 15 12 47 47 H 1.08992 * 109.50312 * 58.66071 * 16 15 12 48 48 H 1.08994 * 109.59963 * 294.86080 * 17 16 15 49 49 H 1.09008 * 109.70194 * 174.50538 * 17 16 15 50 50 H 0.96996 * 120.00127 * 179.97438 * 22 21 19 51 51 H 1.08995 * 109.58565 * 293.82037 * 27 18 17 52 52 H 1.08997 * 109.69997 * 173.46080 * 27 18 17 53 53 H 1.09009 * 109.49209 * 301.33812 * 28 15 12 54 54 H 1.08998 * 109.49824 * 61.39985 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1671 -0.0006 6 6 4.1559 2.6096 0.0002 7 6 5.6859 2.6096 -0.0011 8 6 6.1960 4.0521 -0.0009 9 6 7.7029 4.0521 -0.0015 10 8 8.3093 3.0017 -0.0024 11 7 8.3769 5.2192 -0.0010 12 6 9.8419 5.2192 -0.0010 13 1 10.2051 4.3776 -0.5909 14 6 10.3520 5.0928 1.4359 15 6 10.3519 6.5268 -0.6101 16 6 9.8409 6.6532 -2.0472 17 6 10.3245 7.9797 -2.6418 18 7 11.7864 8.0505 -2.5129 19 6 12.5721 8.2975 -3.6070 20 1 12.2310 8.0145 -4.5918 21 6 13.8070 8.9117 -3.4501 22 7 14.7249 8.7926 -4.3858 23 14 14.1662 9.9074 -1.9109 24 1 14.8185 9.0375 -0.8996 25 1 15.0703 11.0354 -2.2508 26 1 12.8950 10.4410 -1.3588 27 6 12.3892 7.8516 -1.1879 28 6 11.8823 6.5268 -0.6094 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.9500 -0.8401 -0.0004 33 1 4.0089 0.6536 -0.8908 34 1 4.0096 0.6530 0.8890 35 1 3.7930 3.1229 0.8907 36 1 3.7923 3.1241 -0.8893 37 1 6.0485 2.0964 -0.8917 38 1 6.0499 2.0950 0.8882 39 1 5.8333 4.5656 0.8896 40 1 5.8319 4.5663 -0.8904 41 1 7.8918 6.0593 -0.0006 42 1 9.9886 4.1613 1.8698 43 1 9.9885 5.9344 2.0257 44 1 11.4419 5.0924 1.4359 45 1 9.9885 7.3682 -0.0201 46 1 10.2245 5.8256 -2.6438 47 1 8.7513 6.6296 -2.0493 48 1 9.8694 8.8099 -2.1019 49 1 10.0475 8.0330 -3.6948 50 1 15.5877 9.2220 -4.2764 51 1 12.1025 8.6714 -0.5293 52 1 13.4749 7.8188 -1.2793 53 1 12.2456 6.4131 0.4121 54 1 12.2464 5.7000 -1.2191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734577597.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:59 Heat of formation + Delta-G solvation = -107.469247 kcal Electronic energy + Delta-G solvation = -29359.837915 eV Core-core repulsion = 25329.934102 eV Total energy + Delta-G solvation = -4029.903813 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.05845 -40.65083 -39.58752 -36.99745 -36.07810 -35.52428 -34.51318 -33.17691 -31.96885 -31.89603 -30.46470 -28.17018 -27.14756 -25.79317 -24.34403 -24.17023 -22.50991 -21.76073 -21.36247 -21.28639 -20.70078 -18.80559 -18.11494 -17.90629 -17.37524 -17.13495 -16.89775 -16.70597 -16.37571 -15.91646 -15.45739 -15.36139 -15.20586 -14.95503 -14.80675 -14.71632 -14.42196 -14.26961 -14.10794 -13.72451 -13.57738 -13.51355 -13.40677 -13.19995 -13.07885 -12.72153 -12.57897 -12.50595 -12.40133 -12.18949 -12.17895 -12.03855 -12.00120 -11.63308 -11.50490 -11.47206 -11.28763 -11.16301 -10.94303 -10.76506 -10.60273 -10.11525 -9.97633 -8.90467 -8.15794 -5.46984 1.30987 1.42040 1.51701 1.66061 1.76452 2.24037 2.40996 2.42940 3.07024 3.38389 3.68292 3.78794 3.89001 3.91220 3.95294 4.00311 4.07592 4.36707 4.39795 4.42341 4.42700 4.47324 4.51817 4.56167 4.59352 4.61040 4.65195 4.72624 4.83278 4.83974 4.86992 4.89977 4.91115 4.95595 5.01557 5.02140 5.11092 5.12041 5.14801 5.21474 5.29080 5.36358 5.38648 5.44372 5.52065 5.55918 5.67714 5.88116 6.13360 6.57316 6.68542 6.94509 7.29219 7.38763 7.65180 8.04950 9.04431 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.028011 B = 0.001630 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.354883 B =17178.029413 C =17640.196683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.729 5.729 3 C 0.504 3.496 4 O -0.590 6.590 5 C -0.137 4.137 6 C -0.098 4.098 7 C -0.097 4.097 8 C -0.136 4.136 9 C 0.508 3.492 10 O -0.588 6.588 11 N -0.714 5.714 12 C 0.154 3.846 13 H 0.057 0.943 14 C -0.157 4.157 15 C -0.075 4.075 16 C -0.116 4.116 17 C 0.142 3.858 18 N -0.621 5.621 19 C -0.251 4.251 20 H 0.046 0.954 21 C -0.038 4.038 22 N -0.960 5.960 23 Si 0.952 3.048 24 H -0.274 1.274 25 H -0.313 1.313 26 H -0.257 1.257 27 C 0.120 3.880 28 C -0.121 4.121 29 H 0.108 0.892 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.419 0.581 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.414 0.586 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.092 0.908 46 H 0.037 0.963 47 H 0.087 0.913 48 H 0.042 0.958 49 H 0.048 0.952 50 H 0.261 0.739 51 H 0.039 0.961 52 H 0.045 0.955 53 H 0.087 0.913 54 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.713 -16.833 15.814 35.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.381 5.381 3 C 0.292 3.708 4 O -0.470 6.470 5 C -0.176 4.176 6 C -0.136 4.136 7 C -0.135 4.135 8 C -0.176 4.176 9 C 0.297 3.703 10 O -0.469 6.469 11 N -0.366 5.366 12 C 0.049 3.951 13 H 0.076 0.924 14 C -0.215 4.215 15 C -0.094 4.094 16 C -0.155 4.155 17 C 0.018 3.982 18 N -0.346 5.346 19 C -0.380 4.380 20 H 0.064 0.936 21 C -0.232 4.232 22 N -0.607 5.607 23 Si 0.780 3.220 24 H -0.201 1.201 25 H -0.242 1.242 26 H -0.182 1.182 27 C -0.005 4.005 28 C -0.160 4.160 29 H 0.126 0.874 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.256 0.744 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.251 0.749 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.089 0.911 45 H 0.110 0.890 46 H 0.056 0.944 47 H 0.105 0.895 48 H 0.060 0.940 49 H 0.067 0.933 50 H 0.070 0.930 51 H 0.057 0.943 52 H 0.063 0.937 53 H 0.105 0.895 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -26.620 -16.800 15.754 35.200 hybrid contribution 0.858 0.564 -0.131 1.035 sum -25.762 -16.236 15.623 34.225 Atomic orbital electron populations 1.21631 0.79415 1.04013 1.01166 1.45851 1.08239 1.09058 1.74962 1.21335 0.91572 0.83379 0.74535 1.90692 1.71717 1.33128 1.51481 1.21705 0.89473 1.00019 1.06433 1.21260 0.94011 0.95441 1.02903 1.21254 0.94270 0.95106 1.02872 1.21725 0.89150 1.00317 1.06380 1.21323 0.91497 0.83086 0.74408 1.90682 1.71682 1.32897 1.51631 1.46047 1.06715 1.09234 1.74565 1.20791 0.80125 0.97408 0.96786 0.92426 1.22149 1.01887 1.01971 0.95510 1.21226 0.94920 0.97039 0.96213 1.21903 1.00599 0.97417 0.95546 1.21122 0.82152 0.95859 0.99086 1.44492 1.02523 1.83287 1.04328 1.18873 0.99220 1.32079 0.87854 0.93624 1.25943 0.96402 1.00423 1.00468 1.69987 1.05440 1.47255 1.37977 0.85835 0.77714 0.78401 0.80031 1.20054 1.24169 1.18153 1.21404 0.96655 0.96257 0.86171 1.21987 0.95662 0.97376 1.01000 0.87354 0.93410 0.93538 0.74425 0.87000 0.86738 0.91702 0.92040 0.92130 0.91678 0.86692 0.87171 0.74888 0.93466 0.90824 0.91145 0.89024 0.94435 0.89460 0.94012 0.93331 0.93040 0.94325 0.93678 0.89471 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.70 127.77 1.37 2.00 16 2 N -0.73 -6.05 5.71 -484.53 -2.77 -8.81 16 3 C 0.50 7.36 7.83 87.66 0.69 8.05 16 4 O -0.59 -14.28 15.98 -3.02 -0.05 -14.33 16 5 C -0.14 -1.27 5.70 29.85 0.17 -1.10 16 6 C -0.10 -1.24 4.50 30.59 0.14 -1.10 16 7 C -0.10 -1.34 4.50 30.59 0.14 -1.21 16 8 C -0.14 -1.78 5.70 29.85 0.17 -1.61 16 9 C 0.51 10.62 7.79 87.66 0.68 11.30 16 10 O -0.59 -17.61 15.64 -3.06 -0.05 -17.66 16 11 N -0.71 -13.11 4.36 -442.54 -1.93 -15.04 16 12 C 0.15 3.59 2.16 44.99 0.10 3.69 16 13 H 0.06 1.72 7.58 -2.38 -0.02 1.70 16 14 C -0.16 -3.26 9.13 71.98 0.66 -2.61 16 15 C -0.08 -1.92 1.79 -10.77 -0.02 -1.94 16 16 C -0.12 -3.36 5.22 30.67 0.16 -3.20 16 17 C 0.14 5.24 6.52 86.36 0.56 5.80 16 18 N -0.62 -28.90 2.77 -699.10 -1.94 -30.83 16 19 C -0.25 -14.43 10.04 84.03 0.84 -13.58 16 20 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 21 C -0.04 -2.25 5.23 84.86 0.44 -1.80 16 22 N -0.96 -61.34 13.97 21.65 0.30 -61.03 16 23 Si 0.95 46.59 24.35 68.60 1.67 48.26 16 24 H -0.27 -12.62 6.62 99.48 0.66 -11.96 16 25 H -0.31 -15.62 7.11 99.48 0.71 -14.92 16 26 H -0.26 -11.85 6.63 99.48 0.66 -11.19 16 27 C 0.12 4.90 4.20 86.36 0.36 5.26 16 28 C -0.12 -3.85 5.04 30.67 0.15 -3.70 16 29 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.42 0.58 8.83 -92.71 -0.82 -0.23 16 33 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.90 8.10 -2.39 -0.02 0.88 16 36 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 37 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 38 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 39 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 41 H 0.41 5.15 8.39 -92.70 -0.78 4.37 16 42 H 0.05 1.07 8.14 -2.38 -0.02 1.06 16 43 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.07 1.46 6.40 -2.39 -0.02 1.44 16 45 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 47 H 0.09 1.95 7.41 -2.39 -0.02 1.93 16 48 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.05 1.88 7.93 -2.38 -0.02 1.86 16 50 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 51 H 0.04 1.48 7.07 -2.39 -0.02 1.46 16 52 H 0.05 2.09 4.50 -2.39 -0.01 2.08 16 53 H 0.09 2.29 6.36 -2.38 -0.02 2.28 16 54 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -82.81 418.28 1.05 -81.76 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -0.81 Total: 13.42 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 6.62 Total: 4.27 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -6.33 Total: -115.72 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -0.10 Total: -31.99 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.67 Total: 48.26 kcal Total: -82.81 1.05 -81.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734577597.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.710 kcal (2) G-P(sol) polarization free energy of solvation -82.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds