Wall clock time and date at job start Sat Apr 11 2020 05:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47207 * 2 1 4 4 N 1.46497 * 109.46732 * 240.00229 * 2 1 3 5 5 C 1.34777 * 119.99908 * 85.00101 * 4 2 1 6 6 O 1.21281 * 120.00342 * 359.97438 * 5 4 2 7 7 C 1.50707 * 119.99922 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47069 * 180.02562 * 7 5 4 9 9 C 1.53007 * 109.46978 * 300.00114 * 7 5 4 10 10 C 1.53000 * 109.47289 * 60.00141 * 7 5 4 11 11 C 1.52998 * 109.47035 * 120.00550 * 2 1 3 12 12 C 1.53117 * 109.52314 * 299.99796 * 11 2 1 13 13 C 1.53035 * 109.27946 * 177.56236 * 12 11 2 14 14 N 1.46847 * 109.52115 * 300.81743 * 13 12 11 15 15 C 1.46901 * 110.99978 * 185.83998 * 14 13 12 16 16 C 1.50702 * 109.47172 * 169.43287 * 15 14 13 17 17 O 1.21288 * 119.99988 * 353.78424 * 16 15 14 18 18 N 1.34776 * 119.99793 * 173.78060 * 16 15 14 19 19 C 1.37096 * 119.99773 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00315 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99926 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00312 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99921 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47416 * 60.00183 * 23 21 19 25 25 H 1.48504 * 109.47100 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47471 * 299.99953 * 23 21 19 27 27 C 1.46847 * 111.19786 * 61.74377 * 14 13 12 28 28 C 1.53031 * 109.52095 * 298.25645 * 27 14 13 29 29 H 1.08997 * 109.46965 * 59.99308 * 1 2 3 30 30 H 1.08995 * 109.47591 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46715 * 299.99862 * 1 2 3 32 32 H 0.97004 * 120.00191 * 265.00311 * 4 2 1 33 33 H 1.09007 * 109.47046 * 60.00037 * 8 7 5 34 34 H 1.08999 * 109.47190 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.47362 * 300.00002 * 8 7 5 36 36 H 1.08996 * 109.47305 * 60.00113 * 9 7 5 37 37 H 1.08998 * 109.46920 * 179.97438 * 9 7 5 38 38 H 1.08997 * 109.47104 * 300.00217 * 9 7 5 39 39 H 1.08998 * 109.46696 * 59.99632 * 10 7 5 40 40 H 1.08999 * 109.46923 * 180.02562 * 10 7 5 41 41 H 1.09001 * 109.46709 * 300.00277 * 10 7 5 42 42 H 1.09003 * 109.57471 * 179.83960 * 11 2 1 43 43 H 1.09012 * 109.50362 * 297.50313 * 12 11 2 44 44 H 1.08997 * 109.50675 * 57.61523 * 12 11 2 45 45 H 1.09001 * 109.46401 * 60.83707 * 13 12 11 46 46 H 1.09007 * 109.46193 * 180.80242 * 13 12 11 47 47 H 1.08996 * 109.47165 * 289.43905 * 15 14 13 48 48 H 1.09008 * 109.47309 * 49.43497 * 15 14 13 49 49 H 0.97001 * 120.00224 * 0.02562 * 18 16 15 50 50 H 0.96993 * 120.00604 * 180.02562 * 22 21 19 51 51 H 1.09000 * 109.45777 * 178.23831 * 27 14 13 52 52 H 1.09003 * 109.45247 * 58.26594 * 27 14 13 53 53 H 1.09004 * 109.50598 * 299.23671 * 28 27 14 54 54 H 1.09008 * 109.53390 * 179.13917 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0181 -2.3571 6 8 1.8581 1.1585 -2.4117 7 6 2.6498 -0.7284 -3.5876 8 6 2.7017 0.2549 -4.7586 9 6 4.0525 -1.2785 -3.3215 10 6 1.7062 -1.8826 -3.9316 11 6 2.0400 -0.7214 1.2492 12 6 1.5303 -0.0006 2.5002 13 6 1.9927 -0.7610 3.7452 14 7 1.4724 -2.1336 3.7031 15 6 1.7799 -2.8515 4.9474 16 6 1.0180 -4.1513 4.9789 17 8 0.2059 -4.3994 4.1128 18 7 1.2390 -5.0381 5.9694 19 6 0.5454 -6.2203 5.9984 20 1 -0.1777 -6.4412 5.2272 21 6 0.7728 -7.1344 7.0199 22 7 1.6523 -6.8655 7.9585 23 14 -0.1717 -8.7455 7.0589 24 1 0.1099 -9.5146 5.8202 25 1 0.2518 -9.5391 8.2406 26 1 -1.6272 -8.4642 7.1468 27 6 1.9862 -2.8607 2.5353 28 6 1.5237 -2.1629 1.2543 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.2489 -1.6318 -1.1527 33 1 3.3742 1.0769 -4.5132 34 1 3.0658 -0.2587 -5.6484 35 1 1.7026 0.6471 -4.9483 36 1 4.0160 -1.9789 -2.4871 37 1 4.4160 -1.7925 -4.2112 38 1 4.7247 -0.4562 -3.0764 39 1 0.7069 -1.4907 -4.1211 40 1 2.0701 -2.3965 -4.8213 41 1 1.6696 -2.5830 -3.0972 42 1 3.1300 -0.7248 1.2494 43 1 1.9295 1.0135 2.5240 44 1 0.4412 0.0370 2.4803 45 1 3.0821 -0.7862 3.7717 46 1 1.6193 -0.2583 4.6374 47 1 2.8495 -3.0560 4.9939 48 1 1.4896 -2.2394 5.8013 49 1 1.8882 -4.8396 6.6623 50 1 1.8114 -7.5037 8.6714 51 1 1.6082 -3.8830 2.5489 52 1 3.0757 -2.8758 2.5676 53 1 0.4344 -2.1594 1.2148 54 1 1.9176 -2.6936 0.3875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734587203.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:04 Heat of formation + Delta-G solvation = -114.763843 kcal Electronic energy + Delta-G solvation = -30624.577470 eV Core-core repulsion = 26594.357340 eV Total energy + Delta-G solvation = -4030.220130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.48800 -40.60532 -39.48530 -37.17318 -36.51013 -35.85824 -33.90522 -33.21596 -31.77520 -30.92827 -28.58245 -28.22512 -28.04223 -26.61674 -25.37808 -24.31823 -23.75723 -21.97891 -20.97873 -20.42849 -19.98467 -19.84624 -17.82464 -17.70275 -17.23059 -16.69090 -16.48448 -16.35257 -16.13487 -15.76736 -15.63666 -15.33066 -15.17354 -15.03384 -14.80811 -14.58736 -14.33338 -13.95225 -13.82931 -13.53586 -13.46272 -13.30221 -13.19031 -13.07452 -12.89392 -12.87490 -12.80291 -12.63340 -12.57206 -12.51863 -12.41065 -12.12312 -11.90455 -11.86730 -11.83578 -11.60988 -11.49518 -11.33581 -11.09998 -10.62396 -10.23368 -10.06580 -9.97534 -9.12431 -8.44512 -5.92877 1.40387 1.42060 1.52788 1.66064 2.08899 2.20896 2.29620 2.81542 3.22481 3.41988 3.60340 3.66519 3.78254 3.84232 3.90747 3.94174 4.19924 4.26056 4.29733 4.34133 4.37917 4.43082 4.51622 4.52548 4.60425 4.63531 4.70198 4.71470 4.77151 4.82059 4.83152 4.90056 4.93590 4.94843 4.96867 5.02121 5.03799 5.07527 5.21406 5.22304 5.25224 5.30486 5.32561 5.34313 5.42353 5.53376 5.58841 5.94217 6.14967 6.32377 6.56536 6.63519 7.15462 7.26712 7.59782 8.15795 8.72696 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018221 B = 0.002109 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.324847 B =13272.095729 C =14112.206261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.155 3.845 3 H 0.077 0.923 4 N -0.714 5.714 5 C 0.518 3.482 6 O -0.584 6.584 7 C -0.086 4.086 8 C -0.125 4.125 9 C -0.139 4.139 10 C -0.140 4.140 11 C -0.083 4.083 12 C -0.106 4.106 13 C 0.056 3.944 14 N -0.533 5.533 15 C 0.058 3.942 16 C 0.442 3.558 17 O -0.612 6.612 18 N -0.577 5.577 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.015 4.015 22 N -0.922 5.922 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.059 3.941 28 C -0.101 4.101 29 H 0.042 0.958 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.408 0.592 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.041 0.959 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.108 0.892 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.054 0.946 52 H 0.033 0.967 53 H 0.064 0.936 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.029 12.977 -18.843 23.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 H 0.095 0.905 4 N -0.366 5.366 5 C 0.306 3.694 6 O -0.464 6.464 7 C -0.089 4.089 8 C -0.183 4.183 9 C -0.196 4.196 10 C -0.197 4.197 11 C -0.102 4.102 12 C -0.144 4.144 13 C -0.071 4.071 14 N -0.258 5.258 15 C -0.074 4.074 16 C 0.229 3.771 17 O -0.498 6.498 18 N -0.215 5.215 19 C -0.459 4.459 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.069 4.069 28 C -0.139 4.139 29 H 0.061 0.939 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.246 0.754 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.102 0.898 47 H 0.081 0.919 48 H 0.126 0.874 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.072 0.928 52 H 0.051 0.949 53 H 0.082 0.918 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.842 13.566 -19.319 24.319 hybrid contribution 0.635 -1.209 0.913 1.643 sum 6.478 12.357 -18.406 23.096 Atomic orbital electron populations 1.22217 0.95445 1.02337 1.01911 1.20830 0.94016 0.96498 0.83636 0.90521 1.46154 1.66584 1.14576 1.09317 1.21141 0.76209 0.86695 0.85340 1.90661 1.52011 1.18040 1.85702 1.20880 0.98335 0.97165 0.92522 1.21651 1.01879 0.98087 0.96694 1.21881 0.92837 1.01142 1.03735 1.21886 0.98142 0.96176 1.03504 1.21380 1.00595 0.94566 0.93630 1.21644 1.02000 0.98698 0.92079 1.22188 0.97589 0.87652 0.99698 1.61469 1.60722 1.02566 1.01062 1.21717 0.97846 0.93035 0.94763 1.20793 0.86311 0.86806 0.83152 1.90473 1.39435 1.79303 1.40547 1.41959 1.38128 1.16566 1.24804 1.19596 1.20534 0.95197 1.10617 0.90332 1.26024 0.97943 1.02685 0.94787 1.69663 1.34560 1.38318 1.13738 0.85008 0.78285 0.77200 0.77967 1.19659 1.19617 1.19803 1.22051 0.96226 0.97995 0.90652 1.21592 1.01568 0.94900 0.95849 0.93923 0.92111 0.90641 0.75405 0.93253 0.89773 0.93484 0.91270 0.89513 0.92765 0.93071 0.89440 0.91378 0.89999 0.89300 0.91082 0.94038 0.89811 0.91915 0.87391 0.77138 0.91391 0.92793 0.94920 0.91769 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.78 71.98 0.63 -2.67 16 2 C 0.15 2.93 2.41 44.99 0.11 3.04 16 3 H 0.08 1.65 7.58 -2.39 -0.02 1.63 16 4 N -0.71 -12.34 4.78 -442.53 -2.12 -14.45 16 5 C 0.52 10.65 6.45 87.66 0.57 11.22 16 6 O -0.58 -16.84 15.65 -3.03 -0.05 -16.89 16 7 C -0.09 -1.22 0.87 -52.92 -0.05 -1.26 16 8 C -0.13 -1.87 7.76 71.98 0.56 -1.31 16 9 C -0.14 -1.42 8.37 71.98 0.60 -0.82 16 10 C -0.14 -1.57 8.37 71.98 0.60 -0.97 16 11 C -0.08 -1.51 2.25 -10.71 -0.02 -1.53 16 12 C -0.11 -1.99 5.09 30.65 0.16 -1.83 16 13 C 0.06 1.23 5.46 86.33 0.47 1.71 16 14 N -0.53 -16.39 4.35 -900.92 -3.92 -20.31 16 15 C 0.06 1.96 5.45 85.56 0.47 2.43 16 16 C 0.44 20.78 7.31 87.66 0.64 21.42 16 17 O -0.61 -33.23 14.28 -3.05 -0.04 -33.28 16 18 N -0.58 -29.42 5.29 -306.99 -1.62 -31.04 16 19 C -0.33 -18.61 9.68 84.04 0.81 -17.79 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 22 N -0.92 -49.63 13.05 21.66 0.28 -49.34 16 23 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 C 0.06 1.74 5.12 86.32 0.44 2.19 16 28 C -0.10 -2.29 4.87 30.64 0.15 -2.14 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.29 6.38 -2.39 -0.02 1.27 16 31 H 0.07 1.46 6.38 -2.39 -0.02 1.45 16 32 H 0.41 5.52 5.77 -92.71 -0.53 4.98 16 33 H 0.05 0.85 8.10 -2.38 -0.02 0.83 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 36 H 0.07 0.60 7.56 -2.39 -0.02 0.58 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.68 7.56 -2.39 -0.02 0.66 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.07 1.49 6.31 -2.39 -0.02 1.47 16 45 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 46 H 0.08 1.71 8.01 -2.38 -0.02 1.69 16 47 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 48 H 0.11 3.26 7.98 -2.38 -0.02 3.24 16 49 H 0.39 19.19 7.90 -92.71 -0.73 18.46 16 50 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 51 H 0.05 2.09 6.05 -2.39 -0.01 2.07 16 52 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 53 H 0.06 1.70 6.31 -2.38 -0.02 1.69 16 54 H 0.08 1.40 6.62 -2.38 -0.02 1.38 16 Total: -1.00 -71.39 413.60 0.79 -70.60 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.37 Total: 38.58 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 6.61 Total: 11.34 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -7.37 Total: -115.15 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -0.09 Total: -50.17 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -71.39 0.79 -70.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734587203.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.166 kcal (2) G-P(sol) polarization free energy of solvation -71.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds