Wall clock time and date at job start Sat Apr 11 2020 05:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.36945 * 119.99649 * 85.00202 * 4 2 1 6 6 H 1.07997 * 120.00244 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99544 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00617 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99539 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47409 * 59.99747 * 9 7 5 11 11 H 1.48508 * 109.46880 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47283 * 299.99411 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 C 1.53037 * 109.45879 * 60.02382 * 13 2 1 15 15 C 1.53198 * 109.30765 * 178.60225 * 14 13 2 16 16 N 1.46928 * 108.76726 * 54.65578 * 15 14 13 17 17 C 1.34775 * 120.62763 * 126.35880 * 16 15 14 18 18 O 1.21278 * 119.99697 * 180.02562 * 17 16 15 19 19 C 1.50705 * 120.00288 * 0.02562 * 17 16 15 20 20 C 1.53002 * 109.47156 * 179.97438 * 19 17 16 21 21 N 1.46892 * 109.47127 * 180.02562 * 20 19 17 22 22 C 1.47017 * 111.00071 * 293.63406 * 21 20 19 23 23 C 1.53093 * 109.26169 * 177.60838 * 22 21 20 24 24 O 1.43019 * 109.26003 * 56.84689 * 23 22 21 25 25 C 1.43015 * 113.73686 * 301.33496 * 24 23 22 26 26 C 1.47009 * 111.00271 * 170.00200 * 21 20 19 27 27 C 1.46923 * 118.73590 * 306.38412 * 16 15 14 28 28 C 1.53042 * 109.45645 * 299.97136 * 13 2 1 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 33 33 H 0.97006 * 120.00607 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.45905 * 180.02562 * 13 2 1 35 35 H 1.08998 * 109.50080 * 298.56499 * 14 13 2 36 36 H 1.09004 * 109.50002 * 58.66766 * 14 13 2 37 37 H 1.08995 * 109.59774 * 294.86543 * 15 14 13 38 38 H 1.09004 * 109.69743 * 174.51028 * 15 14 13 39 39 H 1.09000 * 109.46918 * 299.99811 * 19 17 16 40 40 H 1.09002 * 109.47084 * 59.99920 * 19 17 16 41 41 H 1.08996 * 109.47069 * 300.00470 * 20 19 17 42 42 H 1.08998 * 109.46947 * 59.99536 * 20 19 17 43 43 H 1.09001 * 109.50550 * 297.54425 * 22 21 20 44 44 H 1.09001 * 109.50869 * 57.66994 * 22 21 20 45 45 H 1.09003 * 109.50560 * 296.91589 * 23 22 21 46 46 H 1.08994 * 109.54608 * 176.80525 * 23 22 21 47 47 H 1.09005 * 109.50878 * 298.73152 * 25 24 23 48 48 H 1.08999 * 109.54110 * 178.62215 * 25 24 23 49 49 H 1.09003 * 109.50305 * 302.32847 * 26 21 20 50 50 H 1.08995 * 109.51001 * 62.40833 * 26 21 20 51 51 H 1.08995 * 109.58843 * 293.81721 * 27 16 15 52 52 H 1.09005 * 109.69834 * 173.45969 * 27 16 15 53 53 H 1.09000 * 109.49675 * 301.33395 * 28 13 2 54 54 H 1.08993 * 109.49759 * 61.40475 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6113 -0.6621 -3.5092 8 7 2.9244 -1.9391 -3.4501 9 14 2.7905 0.2700 -5.1182 10 1 3.7465 1.3917 -4.9367 11 1 3.2993 -0.6486 -6.1683 12 1 1.4685 0.8077 -5.5286 13 6 2.0400 -0.7213 1.2493 14 6 1.5302 -2.1643 1.2486 15 6 2.0714 -2.8932 2.4826 16 7 1.7086 -2.1258 3.6819 17 6 1.0551 -2.7153 4.7027 18 8 0.7609 -2.0709 5.6870 19 6 0.6902 -4.1752 4.6209 20 6 -0.0387 -4.5912 5.9003 21 7 -0.3939 -6.0143 5.8208 22 6 -1.3903 -6.2505 4.7660 23 6 -1.6866 -7.7499 4.6778 24 8 -2.1280 -8.2195 5.9546 25 6 -1.1815 -8.0059 7.0052 26 6 -0.8801 -6.5091 7.1169 27 6 2.0712 -0.7035 3.7469 28 6 1.5303 0.0008 2.4986 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2490 -1.6318 -1.1526 33 1 3.2477 -2.3965 -4.2421 34 1 3.1300 -0.7208 1.2493 35 1 0.4405 -2.1652 1.2741 36 1 1.8740 -2.6713 0.3470 37 1 3.1563 -2.9725 2.4139 38 1 1.6351 -3.8905 2.5410 39 1 0.0396 -4.3395 3.7619 40 1 1.5964 -4.7706 4.5095 41 1 0.6122 -4.4268 6.7590 42 1 -0.9448 -3.9957 6.0121 43 1 -2.3074 -5.7117 5.0044 44 1 -0.9993 -5.9000 3.8108 45 1 -0.7815 -8.2832 4.3869 46 1 -2.4661 -7.9246 3.9364 47 1 -0.2617 -8.5467 6.7820 48 1 -1.5954 -8.3652 7.9474 49 1 -0.1167 -6.3473 7.8779 50 1 -1.7886 -5.9739 7.3933 51 1 3.1561 -0.6042 3.7813 52 1 1.6345 -0.2534 4.6385 53 1 1.8741 1.0351 2.4868 54 1 0.4406 -0.0203 2.5119 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753279718.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:09 Heat of formation + Delta-G solvation = -90.823018 kcal Electronic energy + Delta-G solvation = -30546.257810 eV Core-core repulsion = 26517.075832 eV Total energy + Delta-G solvation = -4029.181978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.40859 -40.46717 -39.32160 -37.08054 -36.76145 -34.67060 -33.12927 -32.21215 -31.98289 -31.64749 -29.87279 -28.05270 -26.63668 -25.58336 -25.01341 -24.33595 -23.76773 -22.42749 -21.35097 -20.60700 -19.57271 -19.23959 -18.34497 -17.26643 -17.16961 -16.92258 -16.78892 -16.62672 -16.07761 -15.97506 -15.88290 -15.54338 -15.43468 -15.34670 -15.02478 -14.67964 -14.50225 -14.20910 -13.99801 -13.91329 -13.60288 -13.31868 -13.13404 -12.97006 -12.89582 -12.87421 -12.74698 -12.61191 -12.47821 -12.31715 -12.18815 -11.99973 -11.86572 -11.74661 -11.59038 -11.47225 -11.24360 -11.11368 -10.88178 -10.76157 -10.66578 -9.64331 -9.47568 -8.94763 -7.90799 -5.16866 1.48435 1.49912 1.55910 1.60202 1.96408 2.58484 2.71892 2.97513 3.42476 3.60587 3.74699 3.80929 3.83909 3.93245 3.95985 4.00036 4.08082 4.15956 4.20803 4.28452 4.32043 4.33819 4.38502 4.41431 4.50744 4.56250 4.62845 4.67197 4.73816 4.76127 4.82498 4.83178 4.84003 4.87669 4.90910 4.94038 4.96825 5.02337 5.03882 5.10562 5.14082 5.28612 5.36345 5.43256 5.55271 5.62261 5.72509 5.86731 5.90098 6.19037 6.32953 6.41872 7.14293 7.39579 8.18110 8.41534 9.32342 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.002181 C = 0.001984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.157916 B =12832.608160 C =14110.845164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.036 0.964 4 N -0.734 5.734 5 C -0.236 4.236 6 H 0.069 0.931 7 C -0.074 4.074 8 N -0.967 5.967 9 Si 0.965 3.035 10 H -0.281 1.281 11 H -0.296 1.296 12 H -0.282 1.282 13 C -0.080 4.080 14 C -0.123 4.123 15 C 0.112 3.888 16 N -0.606 5.606 17 C 0.514 3.486 18 O -0.588 6.588 19 C -0.129 4.129 20 C 0.079 3.921 21 N -0.538 5.538 22 C 0.011 3.989 23 C 0.062 3.938 24 O -0.408 6.408 25 C 0.063 3.937 26 C 0.017 3.983 27 C 0.113 3.887 28 C -0.117 4.117 29 H 0.028 0.972 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.376 0.624 33 H 0.250 0.750 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.077 0.923 42 H 0.026 0.974 43 H 0.033 0.967 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.110 0.890 47 H 0.065 0.935 48 H 0.113 0.887 49 H 0.098 0.902 50 H 0.034 0.966 51 H 0.075 0.925 52 H 0.082 0.918 53 H 0.083 0.917 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.836 -9.830 21.489 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.063 3.937 3 H 0.054 0.946 4 N -0.375 5.375 5 C -0.368 4.368 6 H 0.087 0.913 7 C -0.266 4.266 8 N -0.618 5.618 9 Si 0.795 3.205 10 H -0.207 1.207 11 H -0.223 1.223 12 H -0.208 1.208 13 C -0.100 4.100 14 C -0.161 4.161 15 C -0.011 4.011 16 N -0.338 5.338 17 C 0.304 3.696 18 O -0.469 6.469 19 C -0.169 4.169 20 C -0.049 4.049 21 N -0.263 5.263 22 C -0.117 4.117 23 C -0.015 4.015 24 O -0.327 6.327 25 C -0.014 4.014 26 C -0.111 4.111 27 C -0.009 4.009 28 C -0.156 4.156 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.210 0.790 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.138 0.862 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.119 0.881 45 H 0.084 0.916 46 H 0.128 0.872 47 H 0.083 0.917 48 H 0.131 0.869 49 H 0.116 0.884 50 H 0.052 0.948 51 H 0.094 0.906 52 H 0.100 0.900 53 H 0.101 0.899 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.730 -9.702 21.782 24.524 hybrid contribution -0.248 1.012 -1.202 1.591 sum -5.978 -8.689 20.579 23.125 Atomic orbital electron populations 1.22376 0.98313 1.00843 1.00021 1.20416 0.92472 0.94761 0.86044 0.94556 1.42652 1.78352 1.10518 1.06007 1.19546 1.34614 0.94018 0.88630 0.91266 1.25425 1.03315 0.96881 1.01028 1.69770 1.52772 1.09924 1.29317 0.85335 0.77752 0.77408 0.80011 1.20703 1.22254 1.20841 1.21240 0.99755 0.95249 0.93714 1.21874 1.01047 0.95569 0.97601 1.21899 1.01101 0.95525 0.82528 1.48224 1.56600 1.11100 1.17872 1.21037 0.76342 0.90479 0.81734 1.90661 1.56100 1.67049 1.33061 1.21631 1.03922 0.91065 1.00246 1.21682 0.98702 0.86763 0.97739 1.62234 1.41235 1.16997 1.05872 1.22930 0.93874 0.97995 0.96917 1.22785 1.01209 0.92151 0.85327 1.87962 1.44368 1.82101 1.18293 1.22790 0.93317 0.93763 0.91487 1.22835 0.99740 0.96900 0.91668 1.21584 1.00286 0.80377 0.98662 1.21907 1.01147 0.99694 0.92849 0.95327 0.91621 0.93420 0.79014 0.94135 0.91899 0.91529 0.91715 0.90363 0.87321 0.87418 0.86227 0.90468 0.95538 0.94870 0.88092 0.91584 0.87189 0.91683 0.86875 0.88391 0.94789 0.90641 0.89969 0.89884 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.28 8.79 71.98 0.63 -4.64 16 2 C 0.17 6.30 2.72 44.99 0.12 6.42 16 3 H 0.04 1.40 8.08 -2.39 -0.02 1.38 16 4 N -0.73 -34.93 5.04 -322.94 -1.63 -36.56 16 5 C -0.24 -12.75 9.93 84.03 0.83 -11.92 16 6 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 7 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 8 N -0.97 -57.32 13.06 21.65 0.28 -57.03 16 9 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 C -0.08 -2.30 2.14 -10.77 -0.02 -2.32 16 14 C -0.12 -3.19 4.81 30.67 0.15 -3.04 16 15 C 0.11 2.18 6.34 86.36 0.55 2.73 16 16 N -0.61 -13.13 2.97 -818.90 -2.43 -15.57 16 17 C 0.51 11.83 7.70 87.66 0.67 12.51 16 18 O -0.59 -17.76 15.40 -3.02 -0.05 -17.80 16 19 C -0.13 -2.09 3.98 29.85 0.12 -1.97 16 20 C 0.08 1.42 4.25 86.31 0.37 1.79 16 21 N -0.54 -8.47 4.73 -895.26 -4.23 -12.70 16 22 C 0.01 0.16 5.44 86.31 0.47 0.63 16 23 C 0.06 0.86 7.01 72.01 0.50 1.37 16 24 O -0.41 -7.20 10.83 -148.98 -1.61 -8.81 16 25 C 0.06 0.82 7.01 72.01 0.50 1.33 16 26 C 0.02 0.24 5.64 86.31 0.49 0.72 16 27 C 0.11 2.53 6.43 86.36 0.56 3.09 16 28 C -0.12 -2.76 4.97 30.67 0.15 -2.61 16 29 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.84 6.46 -2.39 -0.02 1.82 16 31 H 0.05 1.60 6.46 -2.38 -0.02 1.59 16 32 H 0.38 18.82 6.04 -92.71 -0.56 18.26 16 33 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 34 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 1.74 6.51 -2.39 -0.02 1.73 16 36 H 0.06 2.01 6.46 -2.38 -0.02 2.00 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.11 1.58 5.93 -2.38 -0.01 1.57 16 39 H 0.11 1.49 6.07 -2.39 -0.01 1.47 16 40 H 0.12 1.59 7.94 -2.39 -0.02 1.57 16 41 H 0.08 1.48 7.99 -2.39 -0.02 1.46 16 42 H 0.03 0.57 8.08 -2.39 -0.02 0.55 16 43 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.10 1.23 6.38 -2.39 -0.02 1.22 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.10 1.16 8.09 -2.39 -0.02 1.14 16 50 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 51 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 52 H 0.08 1.99 7.01 -2.38 -0.02 1.97 16 53 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 54 H 0.07 1.62 6.51 -2.39 -0.02 1.60 16 Total: -1.00 -68.19 405.26 -0.76 -68.95 By element: Atomic # 1 Polarization: 31.29 SS G_CDS: 0.32 Total: 31.61 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 6.56 Total: 0.37 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -8.01 Total: -121.86 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -1.66 Total: -26.61 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -68.19 -0.76 -68.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753279718.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.870 kcal (2) G-P(sol) polarization free energy of solvation -68.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds