Wall clock time and date at job start Sat Apr 11 2020 05:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47077 * 2 1 4 4 C 1.53008 * 109.47061 * 119.99301 * 2 1 3 5 5 C 1.52992 * 109.47115 * 295.00262 * 4 2 1 6 6 C 1.53001 * 109.47340 * 179.97438 * 5 4 2 7 7 C 1.53000 * 109.46559 * 59.99791 * 6 5 4 8 8 C 1.52999 * 109.47325 * 179.97438 * 6 5 4 9 9 C 1.53004 * 109.47096 * 300.00388 * 6 5 4 10 10 C 1.50696 * 109.47494 * 239.99372 * 2 1 3 11 11 O 1.21283 * 120.00283 * 240.00156 * 10 2 1 12 12 N 1.34781 * 119.99882 * 60.00001 * 10 2 1 13 13 C 1.46500 * 120.00005 * 180.02562 * 12 10 2 14 14 C 1.53936 * 113.83039 * 106.32600 * 13 12 10 15 15 N 1.47963 * 86.18081 * 90.64735 * 14 13 12 16 16 C 1.46905 * 110.99442 * 137.58205 * 15 14 13 17 17 C 1.50701 * 109.47159 * 70.64116 * 16 15 14 18 18 O 1.21289 * 119.99845 * 359.97438 * 17 16 15 19 19 N 1.34772 * 119.99976 * 179.97438 * 17 16 15 20 20 C 1.37091 * 120.00115 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00206 * 0.02562 * 20 19 17 22 22 C 1.38953 * 120.00229 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99997 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00278 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47504 * 89.99018 * 24 22 20 26 26 H 1.48499 * 109.47077 * 209.99863 * 24 22 20 27 27 H 1.48505 * 109.46739 * 329.99461 * 24 22 20 28 28 C 1.47962 * 90.76258 * 24.69072 * 15 14 13 29 29 H 1.08999 * 109.47031 * 60.00600 * 1 2 3 30 30 H 1.09008 * 109.47213 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47521 * 300.00583 * 1 2 3 32 32 H 1.09006 * 109.46895 * 55.00342 * 4 2 1 33 33 H 1.08995 * 109.47098 * 175.00335 * 4 2 1 34 34 H 1.09006 * 109.47304 * 299.99829 * 5 4 2 35 35 H 1.09001 * 109.47578 * 59.99583 * 5 4 2 36 36 H 1.09006 * 109.47137 * 60.00575 * 7 6 5 37 37 H 1.09001 * 109.46902 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.47780 * 300.00029 * 7 6 5 39 39 H 1.08995 * 109.46873 * 60.00372 * 8 6 5 40 40 H 1.08999 * 109.47029 * 180.02562 * 8 6 5 41 41 H 1.08997 * 109.47254 * 300.00295 * 8 6 5 42 42 H 1.08994 * 109.47254 * 59.99431 * 9 6 5 43 43 H 1.08999 * 109.47158 * 179.97438 * 9 6 5 44 44 H 1.09001 * 109.46394 * 299.99366 * 9 6 5 45 45 H 0.97002 * 120.00027 * 359.97438 * 12 10 2 46 46 H 1.09002 * 112.93917 * 334.66429 * 13 12 10 47 47 H 1.09003 * 113.75649 * 204.96870 * 14 13 12 48 48 H 1.09007 * 113.75829 * 336.32990 * 14 13 12 49 49 H 1.08998 * 109.46445 * 190.64141 * 16 15 14 50 50 H 1.09000 * 109.47062 * 310.63837 * 16 15 14 51 51 H 0.97005 * 119.99820 * 0.02562 * 19 17 16 52 52 H 0.96991 * 120.00444 * 180.02562 * 23 22 20 53 53 H 1.08991 * 113.75516 * 220.99362 * 28 15 14 54 54 H 1.08998 * 113.86153 * 89.63735 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.6352 0.0691 2.4953 6 6 2.1446 -0.6523 3.7447 7 6 3.6694 -0.7626 3.6837 8 6 1.7403 0.1384 4.9906 9 6 1.5341 -2.0538 3.8090 10 6 2.0324 -0.7105 -1.2303 11 8 2.7297 -1.6966 -1.1190 12 7 1.7068 -0.2502 -2.4545 13 6 2.1948 -0.9412 -3.6506 14 6 1.1117 -1.7504 -4.3867 15 7 0.8637 -0.5193 -5.1691 16 6 0.6768 -0.8292 -6.5928 17 6 -0.6435 -1.5298 -6.7853 18 8 -1.3583 -1.7497 -5.8304 19 7 -1.0301 -1.9119 -8.0186 20 6 -2.2314 -2.5487 -8.1938 21 1 -2.8683 -2.7439 -7.3437 22 6 -2.6298 -2.9432 -9.4653 23 7 -1.8551 -2.7053 -10.4999 24 14 -4.2670 -3.8103 -9.7041 25 1 -5.3289 -2.8028 -9.9543 26 1 -4.1746 -4.7311 -10.8655 27 1 -4.5990 -4.5863 -8.4823 28 6 2.2419 -0.0501 -4.9050 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6054 -1.7197 1.2954 33 1 3.1263 -0.7993 1.2058 34 1 2.0698 1.0677 2.4493 35 1 0.5489 0.1474 2.5389 36 1 4.1044 0.2359 3.6380 37 1 4.0324 -1.2761 4.5740 38 1 3.9579 -1.3256 2.7961 39 1 0.6541 0.2172 5.0342 40 1 2.1037 -0.3754 5.8807 41 1 2.1756 1.1366 4.9446 42 1 1.8225 -2.6167 2.9213 43 1 1.8974 -2.5679 4.6988 44 1 0.4478 -1.9751 3.8524 45 1 1.1488 0.5383 -2.5436 46 1 3.1146 -1.4986 -3.4737 47 1 1.5069 -2.5754 -4.9795 48 1 0.2753 -2.0435 -3.7521 49 1 0.6851 0.0954 -7.1699 50 1 1.4848 -1.4770 -6.9328 51 1 -0.4583 -1.7363 -8.7823 52 1 -2.1333 -2.9803 -11.3874 53 1 2.3083 1.0152 -4.6846 54 1 2.9689 -0.3767 -5.6485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753392124.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:17 Heat of formation + Delta-G solvation = -91.240119 kcal Electronic energy + Delta-G solvation = -29595.139172 eV Core-core repulsion = 25565.939107 eV Total energy + Delta-G solvation = -4029.200065 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.70676 -40.55683 -39.48593 -38.80247 -35.98051 -35.43188 -34.78706 -33.29830 -31.15368 -29.60110 -28.12635 -28.07470 -27.39713 -27.08862 -26.19187 -25.09143 -23.21181 -21.26914 -20.79878 -20.68522 -19.89660 -19.51760 -18.08704 -17.82575 -17.34067 -16.70833 -16.56826 -16.42716 -16.39121 -15.79577 -15.65699 -15.48957 -15.04703 -14.97158 -14.88221 -14.68434 -14.36596 -13.91547 -13.75249 -13.68307 -13.51021 -13.35891 -13.15770 -13.02499 -12.92989 -12.68998 -12.52054 -12.50515 -12.45357 -12.34820 -12.29579 -12.15195 -12.06268 -11.87312 -11.72280 -11.51517 -11.34659 -11.25633 -11.17104 -10.70394 -10.34715 -10.09951 -10.02689 -9.69677 -8.48358 -5.96971 1.36059 1.39811 1.52344 1.62201 2.04033 2.15035 2.27389 2.82433 3.18093 3.24479 3.54488 3.70065 3.73756 3.78832 3.94277 4.03302 4.08915 4.17389 4.21408 4.28712 4.43060 4.46263 4.49899 4.54385 4.56133 4.62380 4.67545 4.73580 4.79262 4.81867 4.84685 4.88815 4.90234 4.97301 5.00115 5.05860 5.12442 5.13970 5.17459 5.26916 5.32761 5.35294 5.37772 5.39326 5.51329 5.54351 5.60160 5.64620 5.84683 6.04211 6.58203 6.58740 7.11346 7.26523 7.54688 8.10829 8.68997 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020871 B = 0.001767 C = 0.001682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.248971 B =15842.311078 C =16640.411146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 H 0.124 0.876 4 C -0.098 4.098 5 C -0.104 4.104 6 C -0.071 4.071 7 C -0.144 4.144 8 C -0.138 4.138 9 C -0.145 4.145 10 C 0.514 3.486 11 O -0.585 6.585 12 N -0.695 5.695 13 C 0.122 3.878 14 C 0.003 3.997 15 N -0.472 5.472 16 C 0.022 3.978 17 C 0.439 3.561 18 O -0.620 6.620 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.076 0.924 22 C -0.012 4.012 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.275 1.275 28 C 0.009 3.991 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.415 0.585 46 H 0.101 0.899 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.114 0.886 50 H 0.079 0.921 51 H 0.396 0.604 52 H 0.278 0.722 53 H 0.117 0.883 54 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.267 10.472 23.400 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 H 0.141 0.859 4 C -0.136 4.136 5 C -0.141 4.141 6 C -0.071 4.071 7 C -0.201 4.201 8 C -0.195 4.195 9 C -0.202 4.202 10 C 0.302 3.698 11 O -0.465 6.465 12 N -0.346 5.346 13 C 0.015 3.985 14 C -0.128 4.128 15 N -0.195 5.195 16 C -0.110 4.110 17 C 0.226 3.774 18 O -0.506 6.506 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.094 0.906 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.195 1.195 26 H -0.194 1.194 27 H -0.200 1.200 28 C -0.120 4.120 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.252 0.748 46 H 0.119 0.881 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.132 0.868 50 H 0.097 0.903 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.135 0.865 54 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.695 10.015 24.036 28.544 hybrid contribution -0.321 -1.047 -1.412 1.787 sum 11.374 8.968 22.624 26.863 Atomic orbital electron populations 1.21834 0.92172 1.02141 1.03957 1.21367 0.97974 1.01607 0.91282 0.85863 1.21467 1.00927 0.98721 0.92465 1.21679 1.01438 0.98807 0.92156 1.20558 0.95528 0.95433 0.95602 1.21930 0.94914 1.01868 1.01375 1.21840 1.01412 0.99881 0.96408 1.21940 1.00688 0.96291 1.01308 1.21390 0.78817 0.83996 0.85592 1.90669 1.40182 1.28184 1.87425 1.45599 1.52930 1.31838 1.04241 1.22234 0.96523 0.94341 0.85364 1.24200 0.98279 0.93504 0.96808 1.68429 1.25377 1.19462 1.06230 1.22379 0.94167 1.01352 0.93101 1.20813 0.89909 0.83725 0.82931 1.90495 1.57716 1.61093 1.41287 1.41936 1.19164 1.52219 1.07827 1.19632 0.97166 1.35178 0.94386 0.90566 1.26015 1.02750 0.98150 0.94262 1.69663 1.38867 1.47618 0.99853 0.84950 0.77480 0.78150 0.77884 1.19547 1.19437 1.20009 1.24472 0.90030 1.02260 0.95201 0.91685 0.93990 0.89072 0.92967 0.92075 0.90705 0.90963 0.92138 0.92752 0.93379 0.92444 0.92697 0.92114 0.93520 0.92685 0.92567 0.74752 0.88071 0.91329 0.92259 0.86803 0.90346 0.76982 0.91283 0.86479 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.84 71.98 0.64 -1.58 16 2 C -0.10 -1.65 2.72 -11.54 -0.03 -1.68 16 3 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.10 -1.68 3.32 30.59 0.10 -1.58 16 5 C -0.10 -1.25 4.02 30.59 0.12 -1.13 16 6 C -0.07 -0.89 0.80 -52.18 -0.04 -0.93 16 7 C -0.14 -1.89 8.12 71.98 0.58 -1.30 16 8 C -0.14 -1.41 8.47 71.98 0.61 -0.80 16 9 C -0.15 -2.09 8.12 71.98 0.58 -1.51 16 10 C 0.51 12.30 7.15 87.65 0.63 12.93 16 11 O -0.58 -18.85 15.54 -3.04 -0.05 -18.90 16 12 N -0.70 -15.20 5.27 -446.11 -2.35 -17.55 16 13 C 0.12 2.96 4.40 46.56 0.20 3.17 16 14 C 0.00 0.08 6.56 86.41 0.57 0.65 16 15 N -0.47 -14.38 5.95 -912.82 -5.43 -19.81 16 16 C 0.02 0.72 5.31 85.56 0.45 1.17 16 17 C 0.44 20.98 7.59 87.66 0.67 21.64 16 18 O -0.62 -34.73 15.12 -3.06 -0.05 -34.77 16 19 N -0.57 -29.60 5.29 -306.99 -1.62 -31.23 16 20 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 24 Si 0.99 43.31 29.55 68.60 2.03 45.34 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 27 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 28 C 0.01 0.18 7.71 86.41 0.67 0.85 16 29 H 0.06 0.98 7.56 -2.39 -0.02 0.97 16 30 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.09 1.01 6.56 -2.39 -0.02 0.99 16 32 H 0.05 1.11 6.43 -2.38 -0.02 1.09 16 33 H 0.06 1.20 6.24 -2.39 -0.01 1.19 16 34 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.07 0.80 6.57 -2.39 -0.02 0.79 16 36 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.05 0.76 6.43 -2.39 -0.02 0.75 16 39 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.05 0.81 6.43 -2.39 -0.02 0.79 16 43 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.42 7.53 8.16 -92.71 -0.76 6.77 16 46 H 0.10 2.52 7.51 -2.39 -0.02 2.50 16 47 H 0.07 2.24 7.78 -2.39 -0.02 2.22 16 48 H 0.06 2.33 8.09 -2.38 -0.02 2.31 16 49 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 50 H 0.08 2.27 7.69 -2.39 -0.02 2.26 16 51 H 0.40 19.30 7.90 -92.70 -0.73 18.57 16 52 H 0.28 14.04 8.31 -92.72 -0.77 13.27 16 53 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 54 H 0.10 1.68 7.80 -2.39 -0.02 1.66 16 Total: -1.00 -73.64 423.75 -0.75 -74.39 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: -0.60 Total: 40.54 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 7.03 Total: 11.37 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -9.12 Total: -117.97 kcal Atomic # 8 Polarization: -53.58 SS G_CDS: -0.09 Total: -53.67 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -73.64 -0.75 -74.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753392124.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.853 kcal (2) G-P(sol) polarization free energy of solvation -73.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds