Wall clock time and date at job start Sat Apr 11 2020 05:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21284 * 120.00285 * 2 1 4 4 N 1.34775 * 120.00011 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00139 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47322 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.47373 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.47299 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.47005 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.47220 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99469 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00315 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99998 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.49588 * 35.00842 * 13 12 10 15 15 C 1.53032 * 109.49959 * 274.93809 * 13 12 10 16 16 C 1.53037 * 109.53985 * 178.71865 * 15 13 12 17 17 C 1.53191 * 109.34376 * 61.31436 * 16 15 13 18 18 N 1.46927 * 108.77460 * 305.38594 * 17 16 15 19 19 C 1.36939 * 120.62652 * 233.62596 * 18 17 16 20 20 H 1.08008 * 119.99390 * 150.13799 * 19 18 17 21 21 C 1.38808 * 120.00488 * 330.14159 * 19 18 17 22 22 N 1.31623 * 119.99492 * 344.50471 * 21 19 18 23 23 Si 1.86799 * 120.00389 * 164.50794 * 21 19 18 24 24 H 1.48501 * 109.46732 * 59.99606 * 23 21 19 25 25 H 1.48497 * 109.47005 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46910 * 299.99867 * 23 21 19 27 27 C 1.46923 * 118.73815 * 53.60291 * 18 17 16 28 28 H 1.08998 * 109.58840 * 66.18517 * 27 18 17 29 29 C 1.53007 * 109.58167 * 186.60549 * 27 18 17 30 30 H 1.09000 * 109.46881 * 269.99828 * 1 2 3 31 31 H 1.08997 * 109.46951 * 29.99692 * 1 2 3 32 32 H 1.08998 * 109.47223 * 150.00221 * 1 2 3 33 33 H 0.96998 * 120.00146 * 0.02562 * 4 2 1 34 34 H 1.09007 * 109.47140 * 60.00459 * 5 4 2 35 35 H 1.08996 * 109.47763 * 300.00645 * 5 4 2 36 36 H 1.09005 * 109.46883 * 60.00639 * 6 5 4 37 37 H 1.08992 * 109.47568 * 300.00605 * 6 5 4 38 38 H 1.09001 * 109.47006 * 300.00904 * 7 6 5 39 39 H 1.09005 * 109.46673 * 60.00414 * 7 6 5 40 40 H 1.09007 * 109.46708 * 300.00105 * 8 7 6 41 41 H 1.08996 * 109.47236 * 60.00289 * 8 7 6 42 42 H 1.08996 * 109.47520 * 299.99821 * 9 8 7 43 43 H 1.08997 * 109.47694 * 59.99909 * 9 8 7 44 44 H 0.96997 * 119.99916 * 0.02562 * 12 10 9 45 45 H 1.09005 * 109.45962 * 298.70172 * 15 13 12 46 46 H 1.09000 * 109.46418 * 58.66239 * 15 13 12 47 47 H 1.09003 * 109.47058 * 301.36212 * 16 15 13 48 48 H 1.08999 * 109.52706 * 181.30394 * 16 15 13 49 49 H 1.08999 * 109.59136 * 185.59330 * 17 16 15 50 50 H 1.09005 * 109.58145 * 65.17098 * 17 16 15 51 51 H 0.97008 * 119.99508 * 179.97438 * 22 21 19 52 52 H 1.09010 * 109.46765 * 179.29043 * 29 27 18 53 53 H 1.09001 * 109.46970 * 299.28818 * 29 27 18 54 54 H 1.08997 * 109.47208 * 59.29614 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 6 4.1558 -2.6097 -0.0010 7 6 5.6859 -2.6098 -0.0009 8 6 6.1959 -4.0522 -0.0014 9 6 7.7258 -4.0522 -0.0007 10 6 8.2282 -5.4731 -0.0006 11 8 7.4400 -6.3949 -0.0015 12 7 9.5532 -5.7194 -0.0005 13 6 10.0415 -7.1006 -0.0010 14 1 9.3694 -7.7238 -0.5908 15 6 10.0946 -7.6241 1.4360 16 6 10.5741 -9.0774 1.4340 17 6 11.9853 -9.1452 0.8416 18 7 11.9725 -8.5121 -0.4842 19 6 12.4414 -9.1828 -1.5821 20 1 12.0274 -8.9768 -2.5582 21 6 13.4486 -10.1274 -1.4407 22 7 14.1614 -10.1687 -0.3349 23 14 13.7925 -11.3399 -2.8194 24 1 14.1673 -10.5972 -4.0496 25 1 14.9083 -12.2362 -2.4235 26 1 12.5755 -12.1496 -3.0815 27 6 11.4466 -7.1459 -0.6096 28 1 12.0981 -6.4532 -0.0769 29 6 11.3782 -6.7564 -2.0877 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 1.6959 -2.0072 -0.0013 34 1 4.0095 -0.6536 0.8890 35 1 4.0089 -0.6531 -0.8910 36 1 3.7922 -3.1237 -0.8908 37 1 3.7928 -3.1234 0.8891 38 1 6.0492 -2.0959 -0.8908 39 1 6.0491 -2.0959 0.8891 40 1 5.8324 -4.5664 0.8884 41 1 5.8326 -4.5657 -0.8916 42 1 8.0896 -3.5380 -0.8902 43 1 8.0888 -3.5389 0.8896 44 1 10.1835 -4.9821 -0.0002 45 1 10.7854 -7.0151 2.0191 46 1 9.1002 -7.5700 1.8792 47 1 9.8971 -9.6826 0.8311 48 1 10.5897 -9.4573 2.4555 49 1 12.2919 -10.1868 0.7462 50 1 12.6807 -8.6155 1.4928 51 1 14.8651 -10.8291 -0.2359 52 1 10.9761 -5.7474 -2.1793 53 1 12.3789 -6.7893 -2.5187 54 1 10.7310 -7.4549 -2.6179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755720823.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:13 Heat of formation + Delta-G solvation = -111.344950 kcal Electronic energy + Delta-G solvation = -29164.108274 eV Core-core repulsion = 25134.036398 eV Total energy + Delta-G solvation = -4030.071876 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.03438 -40.58256 -39.27508 -37.29791 -35.86749 -35.26425 -34.24638 -33.40822 -32.47804 -31.06264 -30.22235 -28.03583 -27.13468 -26.68868 -24.17096 -23.00969 -22.32801 -22.19505 -21.31785 -21.28133 -20.81408 -18.33325 -17.89162 -17.68462 -17.26876 -17.14620 -17.01475 -16.64177 -16.50674 -15.79486 -15.62370 -15.53909 -15.13673 -14.81995 -14.71177 -14.58117 -14.34787 -14.24048 -13.92323 -13.40573 -13.34498 -13.25800 -13.19817 -12.91424 -12.87278 -12.78435 -12.70461 -12.53232 -12.37163 -12.12269 -12.01993 -11.97401 -11.92546 -11.81188 -11.76364 -11.60546 -11.39024 -11.17451 -10.98153 -10.69773 -10.52095 -10.11359 -9.93256 -8.63993 -7.85651 -5.32014 1.46759 1.49485 1.55346 1.63697 1.78189 2.23380 2.35679 2.55659 3.30032 3.61721 3.78435 3.88945 3.93365 3.96649 4.01614 4.05902 4.17620 4.22679 4.28872 4.36871 4.49488 4.52447 4.54747 4.62850 4.65166 4.67646 4.70823 4.78136 4.84298 4.88445 4.92238 4.93643 4.99984 5.04507 5.07045 5.10174 5.13716 5.24460 5.25537 5.31217 5.43688 5.46146 5.46969 5.51092 5.54396 5.64052 5.70392 5.76733 6.42092 6.58004 6.71198 7.16652 7.26546 7.41198 7.87130 8.38889 9.21139 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030579 B = 0.001500 C = 0.001477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.453992 B =18667.086767 C =18951.143069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.499 3.501 3 O -0.607 6.607 4 N -0.722 5.722 5 C 0.117 3.883 6 C -0.122 4.122 7 C -0.110 4.110 8 C -0.099 4.099 9 C -0.132 4.132 10 C 0.505 3.495 11 O -0.592 6.592 12 N -0.711 5.711 13 C 0.147 3.853 14 H 0.053 0.947 15 C -0.108 4.108 16 C -0.131 4.131 17 C 0.177 3.823 18 N -0.601 5.601 19 C -0.256 4.256 20 H 0.071 0.929 21 C -0.046 4.046 22 N -0.933 5.933 23 Si 0.960 3.040 24 H -0.274 1.274 25 H -0.295 1.295 26 H -0.283 1.283 27 C 0.163 3.837 28 H 0.033 0.967 29 C -0.127 4.127 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.417 0.583 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.413 0.587 45 H 0.065 0.935 46 H 0.054 0.946 47 H 0.042 0.958 48 H 0.071 0.929 49 H 0.052 0.948 50 H 0.004 0.996 51 H 0.249 0.751 52 H 0.077 0.923 53 H 0.047 0.953 54 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.536 18.258 2.437 29.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.288 3.712 3 O -0.489 6.489 4 N -0.375 5.375 5 C -0.007 4.007 6 C -0.160 4.160 7 C -0.149 4.149 8 C -0.137 4.137 9 C -0.172 4.172 10 C 0.294 3.706 11 O -0.472 6.472 12 N -0.363 5.363 13 C 0.040 3.960 14 H 0.071 0.929 15 C -0.147 4.147 16 C -0.170 4.170 17 C 0.052 3.948 18 N -0.325 5.325 19 C -0.387 4.387 20 H 0.088 0.912 21 C -0.242 4.242 22 N -0.579 5.579 23 Si 0.789 3.211 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.209 1.209 27 C 0.057 3.943 28 H 0.051 0.949 29 C -0.184 4.184 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.126 0.874 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.250 0.750 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.061 0.939 48 H 0.090 0.910 49 H 0.071 0.929 50 H 0.022 0.978 51 H 0.058 0.942 52 H 0.096 0.904 53 H 0.066 0.934 54 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -22.507 18.234 2.447 29.069 hybrid contribution 0.832 -1.241 -0.498 1.575 sum -21.675 16.992 1.949 27.611 Atomic orbital electron populations 1.21904 0.88322 1.06158 1.06138 1.21631 0.92384 0.82919 0.74242 1.90708 1.72306 1.33479 1.52398 1.46123 1.07637 1.09244 1.74450 1.21353 0.79859 0.98008 1.01485 1.21711 0.96433 0.94354 1.03510 1.21462 0.94261 0.95683 1.03448 1.21250 0.93159 0.96967 1.02301 1.21746 0.97642 0.91132 1.06657 1.21533 0.81736 0.92971 0.74398 1.90680 1.56338 1.48500 1.51703 1.46007 1.07431 1.08345 1.74509 1.21219 0.95824 0.82823 0.96166 0.92886 1.21668 1.00261 0.96259 0.96496 1.22026 0.98272 0.96371 1.00356 1.20607 0.91784 0.97633 0.84818 1.44260 1.71882 1.11366 1.04955 1.19405 1.12711 1.17430 0.89113 0.91157 1.25757 0.96025 1.03063 0.99339 1.70163 1.22274 1.36770 1.28655 0.85452 0.76901 0.79225 0.79542 1.19986 1.22089 1.20897 1.20743 0.91092 0.86766 0.95732 0.94908 1.21722 1.01135 1.00446 0.95114 0.87320 0.89203 0.87367 0.74560 0.92486 0.92520 0.90702 0.90638 0.90723 0.90644 0.92589 0.92700 0.86547 0.86472 0.75038 0.91602 0.92750 0.93923 0.91016 0.92931 0.97787 0.94219 0.90439 0.93406 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.30 71.23 0.73 -0.17 16 2 C 0.50 7.38 7.94 87.66 0.70 8.07 16 3 O -0.61 -15.68 17.10 -3.04 -0.05 -15.73 16 4 N -0.72 -7.33 5.56 -463.06 -2.57 -9.90 16 5 C 0.12 1.40 5.67 86.38 0.49 1.89 16 6 C -0.12 -1.09 5.33 30.60 0.16 -0.93 16 7 C -0.11 -1.07 5.21 30.59 0.16 -0.91 16 8 C -0.10 -1.48 4.50 30.59 0.14 -1.34 16 9 C -0.13 -1.91 5.70 29.85 0.17 -1.74 16 10 C 0.51 12.81 7.80 87.66 0.68 13.49 16 11 O -0.59 -20.81 15.65 -3.04 -0.05 -20.86 16 12 N -0.71 -17.90 4.57 -442.18 -2.02 -19.92 16 13 C 0.15 5.06 1.99 45.07 0.09 5.15 16 14 H 0.05 2.20 7.58 -2.39 -0.02 2.19 16 15 C -0.11 -3.72 5.46 30.62 0.17 -3.56 16 16 C -0.13 -5.13 6.08 30.67 0.19 -4.94 16 17 C 0.18 8.51 5.28 86.36 0.46 8.97 16 18 N -0.60 -29.37 2.99 -675.21 -2.02 -31.39 16 19 C -0.26 -13.75 8.58 84.03 0.72 -13.02 16 20 H 0.07 3.68 6.23 -2.91 -0.02 3.66 16 21 C -0.05 -2.55 4.94 84.86 0.42 -2.13 16 22 N -0.93 -54.40 11.23 21.65 0.24 -54.16 16 23 Si 0.96 44.67 29.58 68.60 2.03 46.70 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 27 C 0.16 6.34 3.03 44.98 0.14 6.47 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.25 16 29 C -0.13 -4.47 7.84 71.98 0.56 -3.91 16 30 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.42 1.56 8.47 -92.71 -0.79 0.77 16 34 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 39 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.06 1.00 8.10 -2.38 -0.02 0.98 16 41 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 42 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.41 7.66 8.60 -92.71 -0.80 6.86 16 45 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 46 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.05 2.87 6.15 -2.39 -0.01 2.86 16 50 H 0.00 0.20 8.14 -2.38 -0.02 0.18 16 51 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 52 H 0.08 2.09 7.79 -2.38 -0.02 2.07 16 53 H 0.05 1.83 7.67 -2.39 -0.02 1.81 16 54 H 0.04 1.49 7.40 -2.39 -0.02 1.47 16 Total: -1.00 -77.82 426.47 0.83 -76.99 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -0.71 Total: 16.86 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 5.97 Total: 11.40 kcal Atomic # 7 Polarization: -109.00 SS G_CDS: -6.37 Total: -115.37 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.10 Total: -36.58 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -77.82 0.83 -76.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755720823.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.357 kcal (2) G-P(sol) polarization free energy of solvation -77.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds