Wall clock time and date at job start Sat Apr 11 2020 05:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 119.99859 * 2 1 4 4 N 1.34771 * 119.99589 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99850 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47351 * 180.02562 * 5 4 2 7 7 C 1.52998 * 109.47121 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.46928 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47088 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.46990 * 180.02562 * 9 8 7 11 11 O 1.21284 * 120.00148 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99966 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00528 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.49514 * 34.93312 * 13 12 10 15 15 C 1.53039 * 109.52384 * 274.85780 * 13 12 10 16 16 C 1.53047 * 109.53603 * 301.39382 * 15 13 12 17 17 C 1.53621 * 109.23718 * 298.51277 * 16 15 13 18 18 N 1.46917 * 108.54954 * 54.85791 * 17 16 15 19 19 C 1.36934 * 120.63785 * 126.36677 * 18 17 16 20 20 H 1.08001 * 120.00467 * 209.46644 * 19 18 17 21 21 C 1.38811 * 119.99680 * 29.18144 * 19 18 17 22 22 N 1.31615 * 119.99984 * 16.09560 * 21 19 18 23 23 Si 1.86801 * 120.00150 * 196.10072 * 21 19 18 24 24 H 1.48505 * 109.46984 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47264 * 119.99952 * 23 21 19 26 26 H 1.48498 * 109.47080 * 239.99980 * 23 21 19 27 27 C 1.46927 * 118.73660 * 306.09184 * 18 17 16 28 28 H 1.08996 * 109.59105 * 294.07485 * 27 18 17 29 29 C 1.52997 * 109.59040 * 173.64378 * 27 18 17 30 30 H 1.08998 * 109.47622 * 240.00417 * 1 2 3 31 31 H 1.09008 * 109.47041 * 0.02562 * 1 2 3 32 32 H 1.09006 * 109.47377 * 119.99793 * 1 2 3 33 33 H 0.97003 * 120.00489 * 0.02562 * 4 2 1 34 34 H 1.09001 * 109.47457 * 59.99979 * 5 4 2 35 35 H 1.08998 * 109.47236 * 300.00002 * 5 4 2 36 36 H 1.08993 * 109.47036 * 59.99746 * 6 5 4 37 37 H 1.09006 * 109.46832 * 299.99749 * 6 5 4 38 38 H 1.09010 * 109.47141 * 60.00105 * 7 6 5 39 39 H 1.08998 * 109.47343 * 299.99564 * 7 6 5 40 40 H 1.09005 * 109.47116 * 60.00154 * 8 7 6 41 41 H 1.08993 * 109.47629 * 300.00059 * 8 7 6 42 42 H 1.08997 * 109.46651 * 60.00459 * 9 8 7 43 43 H 1.09001 * 109.46810 * 300.00624 * 9 8 7 44 44 H 0.97001 * 119.99818 * 359.97438 * 12 10 9 45 45 H 1.09001 * 109.46394 * 61.41000 * 15 13 12 46 46 H 1.08996 * 109.46128 * 181.38613 * 15 13 12 47 47 H 1.09004 * 109.49467 * 58.58488 * 16 15 13 48 48 H 1.09003 * 109.49708 * 178.68239 * 16 15 13 49 49 H 1.09001 * 109.74256 * 295.11479 * 17 16 15 50 50 H 1.09010 * 109.66427 * 174.55112 * 17 16 15 51 51 H 0.97003 * 119.99967 * 180.02562 * 22 21 19 52 52 H 1.09001 * 109.46820 * 60.00135 * 29 27 18 53 53 H 1.09003 * 109.47653 * 179.97438 * 29 27 18 54 54 H 1.08997 * 109.47680 * 300.00479 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0011 6 6 4.1558 -2.6098 0.0010 7 6 5.6858 -2.6098 0.0022 8 6 6.1957 -4.0523 0.0027 9 6 7.7258 -4.0524 0.0033 10 6 8.2280 -5.4732 0.0032 11 8 7.4398 -6.3950 0.0022 12 7 9.5531 -5.7195 0.0042 13 6 10.0414 -7.1007 0.0035 14 1 9.3691 -7.7240 -0.5860 15 6 10.0955 -7.6248 1.4403 16 6 11.0138 -6.7308 2.2770 17 6 12.4337 -6.7758 1.6924 18 7 12.3660 -6.4087 0.2715 19 6 13.1492 -5.4023 -0.2274 20 1 12.8072 -4.8186 -1.0693 21 6 14.3802 -5.1284 0.3528 22 7 14.9394 -6.0084 1.1561 23 14 15.2430 -3.5110 -0.0064 24 1 14.4109 -2.7012 -0.9323 25 1 15.4420 -2.7639 1.2614 26 1 16.5615 -3.7820 -0.6335 27 6 11.4463 -7.1461 -0.6056 28 1 11.7743 -8.1820 -0.6907 29 6 11.4262 -6.4960 -1.9904 30 1 -0.3634 -0.5137 0.8900 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3634 -0.5138 -0.8900 33 1 1.6958 -2.0073 0.0005 34 1 4.0089 -0.6533 0.8911 35 1 4.0095 -0.6537 -0.8888 36 1 3.7928 -3.1234 -0.8892 37 1 3.7921 -3.1238 0.8908 38 1 6.0484 -2.0963 0.8928 39 1 6.0499 -2.0957 -0.8873 40 1 5.8331 -4.5662 -0.8876 41 1 5.8317 -4.5661 0.8924 42 1 8.0887 -3.5384 0.8934 43 1 8.0894 -3.5386 -0.8866 44 1 10.1834 -4.9822 0.0046 45 1 9.0929 -7.6166 1.8679 46 1 10.4822 -8.6439 1.4409 47 1 10.6415 -5.7065 2.2565 48 1 11.0334 -7.0909 3.3056 49 1 12.8407 -7.7821 1.7909 50 1 13.0712 -6.0681 2.2226 51 1 15.7995 -5.8168 1.5618 52 1 12.4291 -6.5179 -2.4167 53 1 10.7438 -7.0447 -2.6396 54 1 11.0917 -5.4624 -1.9018 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755720825.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:20 Heat of formation + Delta-G solvation = -107.215358 kcal Electronic energy + Delta-G solvation = -29760.670967 eV Core-core repulsion = 25730.778163 eV Total energy + Delta-G solvation = -4029.892803 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.09225 -40.58233 -39.21141 -37.28438 -35.60645 -35.23554 -33.98047 -33.38101 -32.44706 -31.15438 -30.24878 -28.00010 -27.09248 -26.73321 -24.06043 -23.19940 -22.37362 -22.23515 -21.34865 -21.19208 -20.23618 -18.24285 -18.01984 -17.71568 -17.16067 -17.04499 -17.00379 -16.57382 -16.42781 -15.90145 -15.67720 -15.29208 -15.14136 -14.85363 -14.57020 -14.48427 -14.35953 -14.18389 -13.91752 -13.55986 -13.35653 -13.25208 -12.96510 -12.90653 -12.89456 -12.84106 -12.70071 -12.42908 -12.31018 -12.20262 -12.06207 -11.97700 -11.92141 -11.88738 -11.66477 -11.40108 -11.34486 -11.01007 -10.97921 -10.67468 -10.49517 -10.11162 -9.82877 -8.59918 -7.80615 -5.26910 1.49164 1.53155 1.60893 1.64460 1.82256 2.29457 2.47091 2.55231 3.35754 3.60625 3.78423 3.93274 3.94037 4.01146 4.04269 4.09816 4.18731 4.23109 4.28354 4.40711 4.50768 4.54848 4.58905 4.64710 4.66827 4.68023 4.70411 4.79229 4.83982 4.92135 4.96311 4.98985 5.01018 5.06671 5.07204 5.11087 5.15471 5.24389 5.25214 5.36209 5.43226 5.46828 5.48047 5.52959 5.56594 5.71557 5.76907 5.82104 6.45581 6.58625 6.79417 7.20615 7.27507 7.43418 7.90915 8.44490 9.25979 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014834 B = 0.001894 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.157098 B =14780.874645 C =15884.968769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.498 3.502 3 O -0.607 6.607 4 N -0.721 5.721 5 C 0.117 3.883 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.093 4.093 9 C -0.138 4.138 10 C 0.506 3.494 11 O -0.590 6.590 12 N -0.702 5.702 13 C 0.144 3.856 14 H 0.076 0.924 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.179 3.821 18 N -0.595 5.595 19 C -0.244 4.244 20 H 0.082 0.918 21 C -0.051 4.051 22 N -0.937 5.937 23 Si 0.958 3.042 24 H -0.260 1.260 25 H -0.297 1.297 26 H -0.302 1.302 27 C 0.155 3.845 28 H 0.026 0.974 29 C -0.126 4.126 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.418 0.582 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.408 0.592 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.055 0.945 48 H 0.059 0.941 49 H -0.008 1.008 50 H 0.055 0.945 51 H 0.245 0.755 52 H 0.045 0.955 53 H 0.062 0.938 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.534 5.598 -2.436 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.287 3.713 3 O -0.489 6.489 4 N -0.374 5.374 5 C -0.007 4.007 6 C -0.157 4.157 7 C -0.151 4.151 8 C -0.131 4.131 9 C -0.178 4.178 10 C 0.295 3.705 11 O -0.472 6.472 12 N -0.352 5.352 13 C 0.037 3.963 14 H 0.094 0.906 15 C -0.153 4.153 16 C -0.164 4.164 17 C 0.053 3.947 18 N -0.319 5.319 19 C -0.374 4.374 20 H 0.099 0.901 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.788 3.212 24 H -0.184 1.184 25 H -0.224 1.224 26 H -0.230 1.230 27 C 0.048 3.952 28 H 0.044 0.956 29 C -0.184 4.184 30 H 0.130 0.870 31 H 0.103 0.897 32 H 0.130 0.870 33 H 0.255 0.745 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.245 0.755 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.011 0.989 50 H 0.073 0.927 51 H 0.055 0.945 52 H 0.065 0.935 53 H 0.081 0.919 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.499 5.692 -2.391 26.236 hybrid contribution 1.485 0.332 0.190 1.534 sum -24.013 6.024 -2.201 24.855 Atomic orbital electron populations 1.21930 0.88178 1.05930 1.06498 1.21662 0.92445 0.82902 0.74253 1.90712 1.72400 1.33530 1.52286 1.46057 1.07492 1.09270 1.74567 1.21340 0.79941 0.98079 1.01359 1.21688 0.96021 0.94321 1.03690 1.21476 0.94577 0.95897 1.03159 1.21210 0.92510 0.96823 1.02523 1.21739 0.98119 0.92013 1.05884 1.21299 0.81835 0.92646 0.74741 1.90631 1.56117 1.47987 1.52423 1.46041 1.06949 1.08960 1.73278 1.21232 0.95462 0.83374 0.96230 0.90630 1.21709 0.98848 0.99067 0.95713 1.22010 0.96728 0.99426 0.98196 1.20662 0.92829 0.96572 0.84619 1.44353 1.45098 1.38713 1.03709 1.19526 0.96207 1.07028 1.14650 0.90070 1.25777 0.97091 1.00626 1.01123 1.70189 1.17017 1.34776 1.36331 0.85340 0.78060 0.80726 0.77101 1.18439 1.22420 1.22976 1.20855 0.88454 0.94650 0.91195 0.95608 1.21687 1.00998 1.00777 0.94930 0.87019 0.89670 0.86991 0.74485 0.92729 0.92633 0.90343 0.90490 0.91180 0.90963 0.92123 0.92392 0.87719 0.87296 0.75536 0.92672 0.91924 0.92591 0.92228 0.98946 0.92693 0.94535 0.93548 0.91901 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.32 71.24 0.74 -0.29 16 2 C 0.50 7.91 7.94 87.66 0.70 8.61 16 3 O -0.61 -16.58 17.09 -3.03 -0.05 -16.63 16 4 N -0.72 -8.09 5.56 -463.06 -2.57 -10.66 16 5 C 0.12 1.61 5.67 86.38 0.49 2.10 16 6 C -0.12 -1.25 5.33 30.59 0.16 -1.09 16 7 C -0.11 -1.43 5.21 30.59 0.16 -1.27 16 8 C -0.09 -1.61 4.50 30.60 0.14 -1.47 16 9 C -0.14 -2.67 5.70 29.85 0.17 -2.50 16 10 C 0.51 14.25 7.80 87.66 0.68 14.94 16 11 O -0.59 -20.44 15.65 -3.04 -0.05 -20.48 16 12 N -0.70 -20.99 3.46 -442.17 -1.53 -22.52 16 13 C 0.14 4.79 2.32 45.07 0.10 4.90 16 14 H 0.08 2.55 7.58 -2.39 -0.02 2.53 16 15 C -0.11 -3.86 5.58 30.62 0.17 -3.69 16 16 C -0.12 -4.52 5.95 30.82 0.18 -4.34 16 17 C 0.18 8.15 5.32 86.51 0.46 8.61 16 18 N -0.59 -26.66 2.64 -674.42 -1.78 -28.44 16 19 C -0.24 -11.88 8.57 84.03 0.72 -11.16 16 20 H 0.08 3.74 6.24 -2.91 -0.02 3.72 16 21 C -0.05 -2.66 4.93 84.86 0.42 -2.24 16 22 N -0.94 -53.16 11.22 21.65 0.24 -52.92 16 23 Si 0.96 42.48 29.58 68.60 2.03 44.51 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 25 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 26 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 27 C 0.15 5.86 3.20 44.97 0.14 6.01 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 29 C -0.13 -4.25 7.73 71.98 0.56 -3.70 16 30 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.08 0.68 8.12 -2.38 -0.02 0.66 16 32 H 0.11 0.17 8.14 -2.38 -0.02 0.15 16 33 H 0.42 1.84 8.47 -92.71 -0.79 1.06 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 1.17 8.10 -2.38 -0.02 1.15 16 41 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 42 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.41 12.40 7.77 -92.71 -0.72 11.68 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 46 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.06 2.01 7.53 -2.39 -0.02 1.99 16 48 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 49 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 50 H 0.05 2.85 6.12 -2.38 -0.01 2.84 16 51 H 0.25 13.71 8.31 -92.71 -0.77 12.93 16 52 H 0.05 1.71 7.62 -2.39 -0.02 1.69 16 53 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 54 H 0.06 1.93 6.39 -2.39 -0.02 1.91 16 Total: -1.00 -70.87 423.20 1.66 -69.22 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -0.63 Total: 24.52 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 5.99 Total: 13.41 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -5.64 Total: -114.54 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -0.10 Total: -37.12 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -70.87 1.66 -69.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755720825.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.997 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds