Wall clock time and date at job start Sat Apr 11 2020 05:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47073 * 2 1 4 4 C 1.52999 * 109.47133 * 120.00050 * 2 1 3 5 5 H 1.09002 * 109.47271 * 300.00249 * 4 2 1 6 6 C 1.53001 * 109.47347 * 59.99678 * 4 2 1 7 7 C 1.53001 * 109.47129 * 179.97438 * 4 2 1 8 8 C 1.50700 * 109.46939 * 174.99713 * 7 4 2 9 9 O 1.21281 * 120.00155 * 0.02562 * 8 7 4 10 10 N 1.34780 * 119.99912 * 179.97438 * 8 7 4 11 11 C 1.46931 * 120.62702 * 0.02562 * 10 8 7 12 12 C 1.53187 * 108.77274 * 233.58083 * 11 10 8 13 13 C 1.53049 * 109.31497 * 305.36469 * 12 11 10 14 14 C 1.53039 * 109.53353 * 61.36666 * 13 12 11 15 15 H 1.09002 * 109.49751 * 58.58726 * 14 13 12 16 16 N 1.46907 * 109.49602 * 178.65201 * 14 13 12 17 17 C 1.46897 * 110.99762 * 274.93799 * 16 14 13 18 18 C 1.50700 * 109.47026 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00043 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99971 * 179.97438 * 18 17 16 21 21 C 1.37100 * 119.99957 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99903 * 359.97438 * 21 20 18 23 23 C 1.38946 * 120.00075 * 180.02562 * 21 20 18 24 24 N 1.31420 * 120.00024 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00118 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47065 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47631 * 119.99511 * 25 23 21 28 28 H 1.48500 * 109.46753 * 239.99914 * 25 23 21 29 29 C 1.46925 * 120.63279 * 179.97438 * 10 8 7 30 30 H 1.08994 * 109.47242 * 59.99434 * 1 2 3 31 31 H 1.08995 * 109.46978 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46866 * 299.99921 * 1 2 3 33 33 H 1.08999 * 109.46692 * 239.99808 * 2 1 3 34 34 H 1.09004 * 109.46785 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47095 * 299.99885 * 3 2 1 36 36 H 1.08999 * 109.47518 * 60.00313 * 3 2 1 37 37 H 1.09004 * 109.46979 * 299.99885 * 6 4 2 38 38 H 1.08999 * 109.47160 * 59.99825 * 6 4 2 39 39 H 1.09000 * 109.47777 * 180.02562 * 6 4 2 40 40 H 1.08997 * 109.46722 * 55.00256 * 7 4 2 41 41 H 1.08998 * 109.47119 * 294.99987 * 7 4 2 42 42 H 1.09002 * 109.58421 * 113.79367 * 11 10 8 43 43 H 1.08996 * 109.58549 * 353.37147 * 11 10 8 44 44 H 1.09006 * 109.49516 * 185.41853 * 12 11 10 45 45 H 1.08993 * 109.52540 * 65.33473 * 12 11 10 46 46 H 1.08998 * 109.45961 * 301.34644 * 13 12 11 47 47 H 1.08995 * 109.44701 * 181.37889 * 13 12 11 48 48 H 1.00894 * 110.99534 * 150.98116 * 16 14 13 49 49 H 1.09002 * 109.47250 * 299.99661 * 17 16 14 50 50 H 1.08998 * 109.47388 * 59.99939 * 17 16 14 51 51 H 0.96996 * 120.00304 * 359.97438 * 20 18 17 52 52 H 0.97000 * 119.99437 * 180.02562 * 24 23 21 53 53 H 1.09005 * 109.58300 * 6.62965 * 29 10 8 54 54 H 1.08998 * 109.58651 * 246.20905 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6767 -0.2075 2.1392 6 6 1.5300 -2.1637 1.2493 7 6 3.5701 -0.7218 1.2489 8 6 4.0724 -1.3222 2.5366 9 8 3.2843 -1.7118 3.3721 10 7 5.3975 -1.4272 2.7594 11 6 6.3645 -0.9602 1.7565 12 6 7.3363 -2.1013 1.4400 13 6 7.9709 -2.6010 2.7399 14 6 6.8796 -3.1395 3.6680 15 1 6.3430 -3.9463 3.1688 16 7 7.4928 -3.6484 4.9022 17 6 7.9431 -5.0364 4.7326 18 6 8.5646 -5.5232 6.0163 19 8 8.6267 -4.7863 6.9776 20 7 9.0514 -6.7775 6.0961 21 6 9.6163 -7.2205 7.2640 22 1 9.6716 -6.5643 8.1201 23 6 10.1186 -8.5134 7.3461 24 7 10.0518 -9.3117 6.3043 25 14 10.8877 -9.1174 8.9378 26 1 10.8403 -8.0342 9.9526 27 1 10.1340 -10.2960 9.4358 28 1 12.3005 -9.5016 8.6901 29 6 5.9026 -2.0098 4.0101 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9564 0.8900 37 1 0.4400 -2.1637 1.2494 38 1 1.8933 -2.6776 0.3593 39 1 1.8929 -2.6775 2.1395 40 1 3.9337 0.3018 1.1592 41 1 3.9330 -1.3115 0.4071 42 1 6.9176 -0.1080 2.1513 43 1 5.8368 -0.6673 0.8488 44 1 8.1164 -1.7394 0.7700 45 1 6.7959 -2.9179 0.9615 46 1 8.4909 -1.7779 3.2300 47 1 8.6811 -3.3965 2.5147 48 1 6.8575 -3.5670 5.6817 49 1 7.0905 -5.6668 4.4803 50 1 8.6800 -5.0839 3.9309 51 1 9.0014 -7.3669 5.3274 52 1 10.4021 -10.2144 6.3619 53 1 5.0701 -2.4093 4.5894 54 1 6.4180 -1.2430 4.5883 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207646607.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:00 Heat of formation + Delta-G solvation = -117.162635 kcal Electronic energy + Delta-G solvation = -29933.038926 eV Core-core repulsion = 25902.714776 eV Total energy + Delta-G solvation = -4030.324150 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -41.45064 -40.24270 -39.15556 -37.89038 -36.39939 -35.78243 -33.35609 -33.19498 -32.59726 -31.27177 -29.53594 -27.97195 -27.38116 -26.26583 -25.55114 -23.76054 -23.52085 -21.48418 -21.16923 -20.47303 -19.98598 -19.75573 -18.27723 -17.83215 -17.14921 -16.86154 -16.53574 -16.44927 -16.09893 -15.71820 -15.60330 -15.44537 -15.29126 -14.88097 -14.86131 -14.67907 -14.44767 -14.09558 -13.91665 -13.69558 -13.56185 -13.41100 -13.30030 -13.14305 -12.91469 -12.77446 -12.68658 -12.58651 -12.42759 -12.37774 -12.12673 -11.99241 -11.84110 -11.81128 -11.63949 -11.53525 -11.47573 -11.34175 -11.24569 -10.65315 -10.38568 -10.04198 -9.69420 -9.41761 -8.48916 -5.97967 1.35392 1.40827 1.55261 1.63780 1.92294 2.01440 2.28251 2.90071 3.17881 3.40639 3.52580 3.76776 3.81415 3.88871 3.96189 4.05126 4.10233 4.17186 4.24796 4.27548 4.28087 4.40969 4.49017 4.51750 4.57092 4.60037 4.68414 4.72077 4.76805 4.77881 4.82590 4.83974 4.93268 4.99449 5.04615 5.08642 5.10946 5.15677 5.21007 5.27036 5.30990 5.37006 5.39851 5.45089 5.49080 5.59328 5.62220 5.85568 6.05467 6.28001 6.43988 6.57044 7.09960 7.20075 7.52617 8.07786 8.68714 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024333 B = 0.001792 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.446089 B =15623.397017 C =16058.858930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.152 4.152 4 C -0.068 4.068 5 H 0.054 0.946 6 C -0.153 4.153 7 C -0.130 4.130 8 C 0.506 3.494 9 O -0.584 6.584 10 N -0.609 5.609 11 C 0.101 3.899 12 C -0.127 4.127 13 C -0.109 4.109 14 C 0.081 3.919 15 H 0.040 0.960 16 N -0.672 5.672 17 C 0.069 3.931 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.995 3.005 26 H -0.274 1.274 27 H -0.271 1.271 28 H -0.269 1.269 29 C 0.116 3.884 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.105 0.895 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.060 0.940 48 H 0.342 0.658 49 H 0.060 0.940 50 H 0.106 0.894 51 H 0.396 0.604 52 H 0.278 0.722 53 H 0.066 0.934 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.107 19.591 -21.781 32.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.105 4.105 3 C -0.209 4.209 4 C -0.087 4.087 5 H 0.072 0.928 6 C -0.210 4.210 7 C -0.169 4.169 8 C 0.296 3.704 9 O -0.464 6.464 10 N -0.342 5.342 11 C -0.020 4.020 12 C -0.166 4.166 13 C -0.147 4.147 14 C -0.029 4.029 15 H 0.058 0.942 16 N -0.304 5.304 17 C -0.064 4.064 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.194 1.194 29 C -0.008 4.008 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.102 0.898 43 H 0.135 0.865 44 H 0.123 0.877 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.161 0.839 49 H 0.077 0.923 50 H 0.124 0.876 51 H 0.230 0.770 52 H 0.088 0.912 53 H 0.084 0.916 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.798 19.954 -20.879 31.589 hybrid contribution -0.438 -1.592 1.004 1.932 sum -13.236 18.363 -19.875 30.123 Atomic orbital electron populations 1.21902 0.95392 1.01805 1.01717 1.21127 0.95798 0.96466 0.97106 1.21940 1.01815 0.95274 1.01836 1.20899 0.93039 0.96350 0.98392 0.92774 1.21963 1.01121 0.96474 1.01465 1.21925 0.97039 1.03790 0.94154 1.21505 0.81306 0.77871 0.89698 1.90667 1.55739 1.51083 1.48934 1.48233 1.06117 1.60978 1.18918 1.22111 0.90757 0.97053 0.92094 1.21923 0.99405 0.98506 0.96752 1.21560 0.96829 1.01163 0.95148 1.21890 0.94578 0.95831 0.90607 0.94178 1.60159 1.45114 1.19091 1.06067 1.21545 1.00032 0.89719 0.95096 1.20804 0.83508 0.82288 0.90878 1.90491 1.62915 1.56570 1.40877 1.41927 1.52886 1.11985 1.14129 1.19720 1.36510 0.97929 0.92294 0.90305 1.26064 0.97637 0.95450 1.02116 1.69683 1.46724 1.08552 1.31108 0.84848 0.78104 0.78002 0.77232 1.19839 1.19597 1.19431 1.21477 0.96548 0.95853 0.86911 0.91822 0.92678 0.93510 0.89960 0.91207 0.91913 0.93487 0.92507 0.92200 0.93942 0.86175 0.86536 0.89846 0.86465 0.87704 0.91588 0.91310 0.92103 0.83876 0.92262 0.87588 0.76980 0.91250 0.91551 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.84 71.98 0.64 -0.97 16 2 C -0.09 -0.84 2.51 -10.79 -0.03 -0.86 16 3 C -0.15 -1.16 8.85 71.98 0.64 -0.52 16 4 C -0.07 -0.99 1.62 -10.79 -0.02 -1.00 16 5 H 0.05 1.05 7.96 -2.39 -0.02 1.03 16 6 C -0.15 -2.71 8.58 71.98 0.62 -2.09 16 7 C -0.13 -1.53 3.30 29.85 0.10 -1.44 16 8 C 0.51 10.61 7.42 87.66 0.65 11.26 16 9 O -0.58 -17.82 13.38 -3.03 -0.04 -17.86 16 10 N -0.61 -11.35 2.97 -818.83 -2.43 -13.79 16 11 C 0.10 1.05 6.34 86.36 0.55 1.59 16 12 C -0.13 -1.50 6.08 30.67 0.19 -1.32 16 13 C -0.11 -2.14 5.40 30.62 0.17 -1.98 16 14 C 0.08 2.02 2.64 45.00 0.12 2.14 16 15 H 0.04 1.05 7.80 -2.39 -0.02 1.03 16 16 N -0.67 -22.08 5.94 -495.10 -2.94 -25.02 16 17 C 0.07 2.45 5.97 85.56 0.51 2.96 16 18 C 0.44 21.43 7.82 87.66 0.69 22.11 16 19 O -0.62 -35.37 15.78 -3.05 -0.05 -35.42 16 20 N -0.57 -30.01 5.29 -306.99 -1.62 -31.63 16 21 C -0.34 -19.38 9.68 84.04 0.81 -18.57 16 22 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 23 C -0.01 -0.70 5.50 84.92 0.47 -0.23 16 24 N -0.92 -50.10 13.05 21.66 0.28 -49.82 16 25 Si 0.99 43.47 29.55 68.60 2.03 45.49 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 27 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 28 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 29 C 0.12 2.81 5.70 86.37 0.49 3.30 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.62 6.43 -2.39 -0.02 0.61 16 32 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 33 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.35 6.32 -2.38 -0.02 0.34 16 35 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.06 0.95 6.43 -2.38 -0.02 0.94 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.04 1.04 5.95 -2.39 -0.01 1.03 16 40 H 0.12 0.85 5.98 -2.39 -0.01 0.83 16 41 H 0.12 0.86 7.69 -2.39 -0.02 0.85 16 42 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.12 0.49 5.93 -2.39 -0.01 0.47 16 44 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 45 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.06 1.30 7.43 -2.39 -0.02 1.28 16 48 H 0.34 12.18 8.06 -89.70 -0.72 11.46 16 49 H 0.06 1.95 8.06 -2.39 -0.02 1.93 16 50 H 0.11 3.38 7.42 -2.39 -0.02 3.36 16 51 H 0.40 19.71 7.90 -92.71 -0.73 18.97 16 52 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 53 H 0.07 1.94 7.01 -2.38 -0.02 1.92 16 54 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -74.35 414.91 1.25 -73.10 By element: Atomic # 1 Polarization: 41.13 SS G_CDS: -0.56 Total: 40.57 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 6.58 Total: 14.38 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -6.71 Total: -120.27 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -0.09 Total: -53.28 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -74.35 1.25 -73.10 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207646607.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.063 kcal (2) G-P(sol) polarization free energy of solvation -74.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds