Wall clock time and date at job start Sat Apr 11 2020 05:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47437 * 2 1 4 4 C 1.53002 * 109.46932 * 240.00504 * 2 1 3 5 5 C 1.50699 * 109.47103 * 175.00024 * 4 2 1 6 6 O 1.21280 * 120.00167 * 0.02562 * 5 4 2 7 7 N 1.34779 * 119.99915 * 179.97438 * 5 4 2 8 8 C 1.46501 * 120.00024 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47019 * 180.02562 * 8 7 5 10 10 H 1.09001 * 109.47203 * 304.99647 * 9 8 7 11 11 C 1.52997 * 109.47163 * 65.00541 * 9 8 7 12 12 C 1.53007 * 109.46840 * 185.00265 * 9 8 7 13 13 N 1.46504 * 109.46841 * 175.00512 * 12 9 8 14 14 C 1.36936 * 120.00023 * 180.02562 * 13 12 9 15 15 H 1.08005 * 119.99536 * 359.97438 * 14 13 12 16 16 C 1.38806 * 120.00298 * 179.97438 * 14 13 12 17 17 N 1.31617 * 119.99936 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00162 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46926 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.46989 * 119.99659 * 18 16 14 21 21 H 1.48503 * 109.46924 * 239.99785 * 18 16 14 22 22 N 1.46499 * 109.47368 * 120.00680 * 2 1 3 23 23 C 1.34775 * 119.99299 * 274.99907 * 22 2 1 24 24 O 1.21276 * 120.00699 * 359.97438 * 23 22 2 25 25 C 1.50709 * 119.99599 * 179.97438 * 23 22 2 26 26 C 1.55238 * 110.58096 * 294.87565 * 25 23 22 27 27 C 1.54894 * 102.58338 * 203.33573 * 26 25 23 28 28 C 1.54266 * 104.31305 * 37.93170 * 27 26 25 29 29 C 1.53869 * 106.60031 * 336.32486 * 28 27 26 30 30 H 1.08998 * 109.47437 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46957 * 300.00054 * 1 2 3 32 32 H 1.09000 * 109.47138 * 59.99601 * 1 2 3 33 33 H 1.09003 * 109.46856 * 295.00082 * 4 2 1 34 34 H 1.08997 * 109.47422 * 54.99943 * 4 2 1 35 35 H 0.97004 * 120.00138 * 359.97438 * 7 5 4 36 36 H 1.08996 * 109.47128 * 300.00570 * 8 7 5 37 37 H 1.09004 * 109.47234 * 60.00401 * 8 7 5 38 38 H 1.08993 * 109.47611 * 59.99169 * 11 9 8 39 39 H 1.08998 * 109.47316 * 180.02562 * 11 9 8 40 40 H 1.09011 * 109.46763 * 299.99567 * 11 9 8 41 41 H 1.08999 * 109.47043 * 294.99451 * 12 9 8 42 42 H 1.08997 * 109.47247 * 55.00195 * 12 9 8 43 43 H 0.97001 * 120.00071 * 359.97438 * 13 12 9 44 44 H 0.97003 * 120.00302 * 180.02562 * 17 16 14 45 45 H 0.96998 * 120.00025 * 94.99524 * 22 2 1 46 46 H 1.09006 * 110.43428 * 57.45967 * 25 23 22 47 47 H 1.08996 * 110.89448 * 85.05138 * 26 25 23 48 48 H 1.08993 * 110.76342 * 321.56803 * 26 25 23 49 49 H 1.09002 * 110.48891 * 279.18596 * 27 26 25 50 50 H 1.08998 * 110.48494 * 156.67683 * 27 26 25 51 51 H 1.09001 * 110.03084 * 95.60669 * 28 27 26 52 52 H 1.08996 * 110.03108 * 216.98559 * 28 27 26 53 53 H 1.08999 * 110.04012 * 119.28327 * 29 28 27 54 54 H 1.09006 * 110.02998 * 240.67078 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6148 -1.3128 6 8 4.1450 -0.0212 -0.4442 7 7 4.2148 -1.1804 -2.3345 8 6 5.6748 -1.0766 -2.3965 9 6 6.1848 -1.7978 -3.6458 10 1 5.8218 -2.8256 -3.6455 11 6 5.6744 -1.0768 -4.8950 12 6 7.7148 -1.7974 -3.6461 13 7 8.2031 -2.5895 -4.7776 14 6 9.5494 -2.7332 -4.9826 15 1 10.2512 -2.2621 -4.3102 16 6 10.0121 -3.4841 -6.0543 17 7 9.1569 -4.0586 -6.8733 18 14 11.8487 -3.6794 -6.3343 19 1 12.5912 -2.9405 -5.2817 20 1 12.2079 -5.1192 -6.2760 21 1 12.2069 -3.1334 -7.6680 22 7 2.0184 -0.6907 1.1961 23 6 2.1471 -0.0184 2.3570 24 8 1.8591 1.1584 2.4115 25 6 2.6490 -0.7290 3.5876 26 6 1.6423 -1.8229 4.0348 27 6 1.9740 -1.9925 5.5383 28 6 2.2812 -0.5612 6.0249 29 6 2.7103 0.2421 4.7846 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.7515 -1.7714 -1.2057 34 1 1.6053 -0.2616 -2.1370 35 1 3.7325 -1.6562 -3.0287 36 1 5.9628 -0.0263 -2.4408 37 1 6.1098 -1.5355 -1.5086 38 1 6.0373 -0.0491 -4.8952 39 1 6.0372 -1.5909 -5.7850 40 1 4.5842 -1.0772 -4.8948 41 1 8.0778 -0.7736 -3.7359 42 1 8.0785 -2.2315 -2.7148 43 1 7.5728 -3.0129 -5.3812 44 1 9.4802 -4.5837 -7.6221 45 1 2.2490 -1.6319 1.1524 46 1 3.6296 -1.1669 3.4009 47 1 1.8139 -2.7536 3.4940 48 1 0.6159 -1.4811 3.9018 49 1 2.8456 -2.6344 5.6666 50 1 1.1177 -2.4020 6.0740 51 1 1.3890 -0.1175 6.4668 52 1 3.0894 -0.5808 6.7560 53 1 2.0264 1.0757 4.6246 54 1 3.7271 0.6132 4.9135 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319291168.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:43 Heat of formation + Delta-G solvation = -122.768134 kcal Electronic energy + Delta-G solvation = -29457.799899 eV Core-core repulsion = 25427.232676 eV Total energy + Delta-G solvation = -4030.567222 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.36542 -40.57323 -38.45127 -38.03925 -36.65125 -35.88924 -34.11420 -32.82855 -31.88960 -29.94088 -29.55055 -29.20603 -27.65813 -26.73644 -24.44531 -23.71577 -22.13973 -21.57757 -21.31809 -21.07681 -20.54285 -19.22783 -18.47301 -17.89036 -17.46196 -17.15354 -16.66912 -16.43778 -16.36693 -15.73667 -15.69588 -15.55697 -15.42700 -15.12210 -14.67957 -14.33580 -14.25512 -14.15783 -13.96165 -13.66401 -13.58186 -13.49164 -12.99924 -12.93170 -12.85286 -12.82999 -12.80391 -12.18248 -12.16096 -12.13274 -12.07916 -11.99208 -11.98709 -11.95677 -11.70319 -11.68804 -11.65598 -11.31761 -10.96550 -10.84950 -10.70163 -10.07097 -9.97906 -9.00170 -7.96691 -5.24730 1.47251 1.47528 1.57724 1.69913 1.73705 2.21312 2.29780 2.56017 3.37147 3.53218 3.63365 3.67304 3.74270 3.80199 3.85102 3.96621 4.09071 4.23975 4.25058 4.33768 4.44159 4.48044 4.52376 4.55346 4.58641 4.61845 4.64550 4.71983 4.72721 4.78166 4.79582 4.85504 4.93975 4.95304 5.05441 5.08159 5.10028 5.12596 5.20581 5.26742 5.32535 5.34830 5.35964 5.43849 5.46501 5.49371 5.51992 5.62311 6.26423 6.58659 6.65457 7.33170 7.33583 7.34992 8.08279 8.32942 9.26775 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015895 B = 0.001770 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.097365 B =15813.566512 C =16957.036377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 H 0.054 0.946 4 C -0.139 4.139 5 C 0.503 3.497 6 O -0.581 6.581 7 N -0.714 5.714 8 C 0.140 3.860 9 C -0.092 4.092 10 H 0.082 0.918 11 C -0.135 4.135 12 C 0.155 3.845 13 N -0.740 5.740 14 C -0.247 4.247 15 H 0.072 0.928 16 C -0.073 4.073 17 N -0.966 5.966 18 Si 0.972 3.028 19 H -0.269 1.269 20 H -0.292 1.292 21 H -0.293 1.293 22 N -0.704 5.704 23 C 0.520 3.480 24 O -0.590 6.590 25 C -0.115 4.115 26 C -0.105 4.105 27 C -0.121 4.121 28 C -0.123 4.123 29 C -0.116 4.116 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.416 0.584 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.080 0.920 41 H 0.017 0.983 42 H 0.019 0.981 43 H 0.377 0.623 44 H 0.252 0.748 45 H 0.409 0.591 46 H 0.105 0.895 47 H 0.093 0.907 48 H 0.066 0.934 49 H 0.077 0.923 50 H 0.080 0.920 51 H 0.065 0.935 52 H 0.072 0.928 53 H 0.058 0.942 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.862 2.365 19.562 30.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.048 3.952 3 H 0.072 0.928 4 C -0.179 4.179 5 C 0.290 3.710 6 O -0.461 6.461 7 N -0.367 5.367 8 C 0.015 3.985 9 C -0.111 4.111 10 H 0.100 0.900 11 C -0.193 4.193 12 C 0.028 3.972 13 N -0.384 5.384 14 C -0.379 4.379 15 H 0.090 0.910 16 C -0.266 4.266 17 N -0.617 5.617 18 Si 0.801 3.199 19 H -0.194 1.194 20 H -0.219 1.219 21 H -0.220 1.220 22 N -0.355 5.355 23 C 0.308 3.692 24 O -0.471 6.471 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.158 4.158 28 C -0.160 4.160 29 C -0.154 4.154 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.253 0.747 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.210 0.790 44 H 0.061 0.939 45 H 0.245 0.755 46 H 0.123 0.877 47 H 0.112 0.888 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.099 0.901 51 H 0.083 0.917 52 H 0.091 0.909 53 H 0.076 0.924 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.449 3.661 20.241 31.192 hybrid contribution 1.258 -0.526 -1.021 1.703 sum -22.192 3.135 19.220 29.525 Atomic orbital electron populations 1.22101 0.92967 1.03560 1.02506 1.20668 0.94658 0.96360 0.83469 0.92809 1.22090 0.89607 1.05852 1.00313 1.21299 0.91417 0.77606 0.80641 1.90757 1.71475 1.43718 1.40120 1.45939 1.07111 1.56635 1.27064 1.21038 0.80596 0.99880 0.96985 1.21319 0.94635 1.00322 0.94861 0.90001 1.21728 1.01320 0.99687 0.96554 1.20738 0.92686 0.93846 0.89911 1.42500 1.03842 1.60760 1.31278 1.19653 0.84972 1.25016 1.08225 0.90998 1.25523 1.01872 1.00991 0.98186 1.69799 1.34228 1.39260 1.18410 0.85099 0.80307 0.77095 0.77407 1.19367 1.21868 1.21969 1.45830 1.66549 1.14090 1.09009 1.20901 0.76150 0.86620 0.85559 1.90635 1.52524 1.18118 1.85801 1.22277 1.01570 0.97708 0.92053 1.22532 0.97555 0.97161 0.96998 1.22367 1.02395 0.96316 0.94737 1.22143 1.01532 0.95683 0.96658 1.22057 1.01618 0.98060 0.93688 0.89992 0.94244 0.89804 0.84617 0.84414 0.74694 0.92686 0.92442 0.93390 0.93958 0.90164 0.96503 0.96355 0.79001 0.93934 0.75543 0.87719 0.88836 0.91498 0.90474 0.90144 0.91653 0.90947 0.92359 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.48 71.98 0.68 -1.08 16 2 C 0.15 2.48 2.14 44.99 0.10 2.57 16 3 H 0.05 1.35 7.39 -2.39 -0.02 1.33 16 4 C -0.14 -1.38 5.24 29.85 0.16 -1.22 16 5 C 0.50 9.86 7.69 87.66 0.67 10.53 16 6 O -0.58 -17.55 15.35 -3.03 -0.05 -17.60 16 7 N -0.71 -12.74 5.28 -463.06 -2.45 -15.18 16 8 C 0.14 3.48 5.06 86.38 0.44 3.92 16 9 C -0.09 -2.61 2.46 -10.79 -0.03 -2.63 16 10 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 11 C -0.14 -3.64 8.94 71.98 0.64 -3.00 16 12 C 0.16 6.04 5.65 86.38 0.49 6.53 16 13 N -0.74 -36.78 5.33 -343.44 -1.83 -38.61 16 14 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 15 H 0.07 3.91 7.83 -2.91 -0.02 3.88 16 16 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 17 N -0.97 -58.06 13.06 21.65 0.28 -57.77 16 18 Si 0.97 45.93 29.55 68.60 2.03 47.95 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 N -0.70 -11.97 4.21 -442.53 -1.86 -13.83 16 23 C 0.52 11.95 7.10 87.66 0.62 12.57 16 24 O -0.59 -18.92 15.09 -3.02 -0.05 -18.97 16 25 C -0.11 -1.95 3.25 -10.34 -0.03 -1.99 16 26 C -0.10 -1.13 6.34 32.01 0.20 -0.93 16 27 C -0.12 -1.17 6.82 31.67 0.22 -0.95 16 28 C -0.12 -1.58 6.80 31.32 0.21 -1.37 16 29 C -0.12 -2.17 6.18 31.32 0.19 -1.98 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.14 0.43 8.14 -2.39 -0.02 0.42 16 34 H 0.14 0.67 8.14 -2.39 -0.02 0.66 16 35 H 0.42 4.86 7.66 -92.71 -0.71 4.15 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.04 1.39 7.18 -2.39 -0.02 1.37 16 40 H 0.08 1.53 7.18 -2.38 -0.02 1.52 16 41 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.38 19.52 6.85 -92.71 -0.64 18.88 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.41 4.74 8.60 -92.71 -0.80 3.94 16 46 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.07 0.80 8.06 -2.39 -0.02 0.78 16 49 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 51 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 53 H 0.06 1.38 6.85 -2.39 -0.02 1.36 16 54 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 Total: -1.00 -79.60 430.32 0.70 -78.90 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -1.25 Total: 30.77 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 5.87 Total: 4.35 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -5.86 Total: -125.40 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.09 Total: -36.57 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -79.60 0.70 -78.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319291168.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.871 kcal (2) G-P(sol) polarization free energy of solvation -79.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds