Wall clock time and date at job start Sat Apr 11 2020 05:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47165 * 2 1 4 4 C 1.52997 * 109.46729 * 119.99871 * 2 1 3 5 5 N 1.46506 * 109.47289 * 294.99928 * 4 2 1 6 6 C 1.36930 * 120.00258 * 180.02562 * 5 4 2 7 7 H 1.08004 * 119.99823 * 0.02562 * 6 5 4 8 8 C 1.38815 * 120.00439 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99225 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 120.00268 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47411 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.46826 * 120.00327 * 10 8 6 13 13 H 1.48495 * 109.47136 * 239.99966 * 10 8 6 14 14 C 1.53001 * 109.47347 * 239.99678 * 2 1 3 15 15 N 1.46503 * 109.47149 * 65.00153 * 14 2 1 16 16 C 1.34769 * 119.99831 * 179.97438 * 15 14 2 17 17 O 1.21280 * 120.00233 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99882 * 180.02562 * 16 15 14 19 19 C 1.53001 * 109.47365 * 180.02562 * 18 16 15 20 20 H 1.08999 * 109.46394 * 304.99731 * 19 18 16 21 21 C 1.52999 * 109.47028 * 185.00218 * 19 18 16 22 22 N 1.46492 * 109.47224 * 64.99975 * 19 18 16 23 23 C 1.34777 * 119.99851 * 205.00525 * 22 19 18 24 24 O 1.21288 * 120.00253 * 359.97438 * 23 22 19 25 25 C 1.50703 * 120.00013 * 179.97438 * 23 22 19 26 26 C 1.54260 * 110.03306 * 297.90360 * 25 23 22 27 27 C 1.54964 * 104.16418 * 217.13416 * 26 25 23 28 28 C 1.54896 * 102.77046 * 37.89017 * 27 26 25 29 29 C 1.53875 * 110.03245 * 180.68692 * 25 23 22 30 30 H 1.09002 * 109.47620 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47757 * 300.00616 * 1 2 3 32 32 H 1.09004 * 109.46683 * 60.00598 * 1 2 3 33 33 H 1.09001 * 109.47289 * 174.99800 * 4 2 1 34 34 H 1.09004 * 109.47261 * 55.00056 * 4 2 1 35 35 H 0.97001 * 119.99251 * 0.02562 * 5 4 2 36 36 H 0.97000 * 119.99950 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.47104 * 185.00632 * 14 2 1 38 38 H 1.09005 * 109.47062 * 305.00281 * 14 2 1 39 39 H 0.97002 * 119.99560 * 359.97438 * 15 14 2 40 40 H 1.09005 * 109.47433 * 300.00035 * 18 16 15 41 41 H 1.09000 * 109.47417 * 59.99690 * 18 16 15 42 42 H 1.09000 * 109.47172 * 179.97438 * 21 19 18 43 43 H 1.09002 * 109.46909 * 299.99535 * 21 19 18 44 44 H 1.08998 * 109.47397 * 59.99842 * 21 19 18 45 45 H 0.96996 * 120.00737 * 24.99862 * 22 19 18 46 46 H 1.09004 * 110.01439 * 59.29834 * 25 23 22 47 47 H 1.09001 * 110.48734 * 335.78405 * 26 25 23 48 48 H 1.09003 * 110.48426 * 98.42325 * 26 25 23 49 49 H 1.08994 * 110.72147 * 279.57836 * 27 26 25 50 50 H 1.08997 * 110.92432 * 156.29205 * 27 26 25 51 51 H 1.09001 * 110.48140 * 203.40297 * 28 27 26 52 52 H 1.08995 * 110.60039 * 80.82049 * 28 27 26 53 53 H 1.08998 * 110.03252 * 238.57259 * 29 25 23 54 54 H 1.09010 * 110.03087 * 0.02562 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6523 0.0354 2.4424 6 6 2.0017 -0.4201 3.6856 7 1 2.5634 -1.3371 3.7865 8 6 1.6349 0.2971 4.8161 9 7 0.9509 1.4147 4.6930 10 14 2.1110 -0.3248 6.5119 11 1 2.8709 -1.5937 6.3786 12 1 2.9568 0.6891 7.1914 13 1 0.8843 -0.5638 7.3138 14 6 2.0401 -0.7213 -1.2492 15 7 1.6526 0.0352 -2.4424 16 6 1.9966 -0.4132 -3.6658 17 8 2.6266 -1.4434 -3.7791 18 6 1.5985 0.3653 -4.8932 19 6 2.1084 -0.3561 -6.1424 20 1 3.1836 -0.5135 -6.0574 21 6 1.8139 0.4955 -7.3790 22 7 1.4337 -1.6502 -6.2687 23 6 2.0258 -2.6559 -6.9429 24 8 3.1170 -2.4893 -7.4455 25 6 1.3319 -3.9874 -7.0723 26 6 1.1232 -4.6123 -5.6774 27 6 1.3489 -6.1287 -5.9036 28 6 2.5121 -6.1529 -6.9261 29 6 2.2143 -4.9666 -7.8662 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 3.1262 -0.7995 1.2057 34 1 1.6052 -1.7198 1.2952 35 1 1.1481 0.8591 2.3517 36 1 0.6942 1.9158 5.4829 37 1 3.1263 -0.7996 -1.2054 38 1 1.6054 -1.7199 -1.2951 39 1 1.1483 0.8590 -2.3518 40 1 0.5122 0.4436 -4.9374 41 1 2.0331 1.3638 -4.8470 42 1 2.1776 -0.0182 -8.2689 43 1 0.7387 0.6530 -7.4639 44 1 2.3159 1.4584 -7.2851 45 1 0.5609 -1.7834 -5.8670 46 1 0.3716 -3.8607 -7.5722 47 1 1.8537 -4.2194 -4.9702 48 1 0.1094 -4.4253 -5.3235 49 1 0.4564 -6.5931 -6.3227 50 1 1.6398 -6.6215 -4.9759 51 1 2.5113 -7.0902 -7.4826 52 1 3.4683 -6.0101 -6.4228 53 1 1.6819 -5.3158 -8.7509 54 1 3.1446 -4.4789 -8.1575 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319291171.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:48 Heat of formation + Delta-G solvation = -121.800965 kcal Electronic energy + Delta-G solvation = -29804.515220 eV Core-core repulsion = 25773.989937 eV Total energy + Delta-G solvation = -4030.525283 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.39252 -40.58190 -38.44357 -38.01708 -36.64373 -35.88446 -34.10967 -32.84125 -31.88955 -29.94823 -29.53282 -29.19196 -27.64926 -26.73679 -24.44892 -23.68878 -22.06085 -21.61526 -21.50631 -21.07237 -20.45063 -19.22595 -18.43386 -17.91453 -17.48268 -17.05669 -16.66842 -16.45964 -16.42143 -15.88207 -15.66097 -15.49042 -15.28505 -15.07797 -14.72451 -14.51365 -14.29733 -14.20964 -13.91962 -13.67032 -13.56028 -13.35297 -12.98195 -12.95372 -12.86095 -12.79206 -12.64943 -12.24369 -12.17622 -12.13266 -12.03752 -11.98905 -11.97572 -11.94290 -11.69852 -11.67079 -11.65388 -11.43487 -10.96729 -10.83524 -10.68404 -10.06427 -9.97230 -9.00488 -7.96903 -5.24919 1.47081 1.47358 1.57576 1.70903 1.74686 2.21842 2.30518 2.55883 3.36885 3.53157 3.64494 3.70253 3.74499 3.78016 3.86544 3.97265 4.09437 4.24839 4.26094 4.33868 4.44716 4.45514 4.53160 4.55358 4.57534 4.63781 4.68814 4.72038 4.72899 4.77410 4.78692 4.85540 4.94343 4.96354 5.05099 5.06523 5.09480 5.12821 5.21535 5.24255 5.32381 5.35370 5.37945 5.44429 5.45293 5.49139 5.52833 5.63783 6.26255 6.59468 6.66249 7.33050 7.34396 7.35992 8.08022 8.32672 9.26615 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.001928 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.114293 B =14516.141202 C =15846.301994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 H 0.077 0.923 4 C 0.155 3.845 5 N -0.741 5.741 6 C -0.246 4.246 7 H 0.072 0.928 8 C -0.074 4.074 9 N -0.966 5.966 10 Si 0.972 3.028 11 H -0.269 1.269 12 H -0.293 1.293 13 H -0.291 1.291 14 C 0.141 3.859 15 N -0.715 5.715 16 C 0.502 3.498 17 O -0.578 6.578 18 C -0.139 4.139 19 C 0.154 3.846 20 H 0.052 0.948 21 C -0.153 4.153 22 N -0.704 5.704 23 C 0.517 3.483 24 O -0.590 6.590 25 C -0.109 4.109 26 C -0.111 4.111 27 C -0.120 4.120 28 C -0.126 4.126 29 C -0.120 4.120 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.080 0.920 33 H 0.015 0.985 34 H 0.020 0.980 35 H 0.377 0.623 36 H 0.252 0.748 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.415 0.585 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.039 0.961 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.409 0.591 46 H 0.125 0.875 47 H 0.043 0.957 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.065 0.935 51 H 0.081 0.919 52 H 0.044 0.956 53 H 0.085 0.915 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.237 -5.619 -29.311 30.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.112 4.112 3 H 0.096 0.904 4 C 0.028 3.972 5 N -0.384 5.384 6 C -0.378 4.378 7 H 0.090 0.910 8 C -0.267 4.267 9 N -0.617 5.617 10 Si 0.801 3.199 11 H -0.194 1.194 12 H -0.220 1.220 13 H -0.218 1.218 14 C 0.016 3.984 15 N -0.368 5.368 16 C 0.290 3.710 17 O -0.458 6.458 18 C -0.179 4.179 19 C 0.049 3.951 20 H 0.071 0.929 21 C -0.212 4.212 22 N -0.355 5.355 23 C 0.305 3.695 24 O -0.470 6.470 25 C -0.130 4.130 26 C -0.149 4.149 27 C -0.158 4.158 28 C -0.164 4.164 29 C -0.158 4.158 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.210 0.790 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.253 0.747 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.058 0.942 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.245 0.755 46 H 0.143 0.857 47 H 0.062 0.938 48 H 0.110 0.890 49 H 0.108 0.892 50 H 0.084 0.916 51 H 0.100 0.900 52 H 0.063 0.937 53 H 0.104 0.896 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.932 -6.338 -29.619 30.688 hybrid contribution -0.012 0.408 1.661 1.710 sum -4.944 -5.930 -27.958 29.004 Atomic orbital electron populations 1.21712 0.93580 1.01900 1.01882 1.21321 0.97352 0.99917 0.92645 0.90420 1.20737 0.96317 0.94191 0.85924 1.42505 1.66742 1.27848 1.01308 1.19644 1.27761 1.05258 0.85108 0.91017 1.25535 1.01738 0.97926 1.01471 1.69801 1.45040 1.17827 1.29051 0.85092 0.77131 0.77571 0.80081 1.19357 1.21990 1.21837 1.21026 0.98942 0.95048 0.83390 1.45934 1.57676 1.28150 1.05018 1.21272 0.78675 0.85551 0.85495 1.90759 1.41281 1.26528 1.87185 1.22087 1.05949 1.00844 0.89026 1.20652 0.97035 0.82845 0.94589 0.92930 1.22104 1.03453 0.99720 0.95892 1.45810 1.22510 1.12055 1.55087 1.21007 0.85229 0.86543 0.76719 1.90628 1.22860 1.83506 1.50035 1.22008 1.00871 0.91168 0.98928 1.22322 1.02396 0.96050 0.94102 1.22518 0.98951 0.95198 0.99102 1.22368 0.98205 0.98489 0.97314 1.22153 0.99951 0.95128 0.98536 0.93048 0.94086 0.90076 0.96702 0.96207 0.79008 0.93932 0.93117 0.92065 0.74747 0.84560 0.84633 0.94182 0.89963 0.89900 0.75527 0.85684 0.93784 0.89002 0.89203 0.91597 0.90011 0.93695 0.89606 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 8.94 71.98 0.64 -2.82 16 2 C -0.09 -2.64 2.46 -10.79 -0.03 -2.66 16 3 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 4 C 0.16 6.06 5.65 86.38 0.49 6.55 16 5 N -0.74 -36.90 5.33 -343.44 -1.83 -38.73 16 6 C -0.25 -13.73 9.99 84.04 0.84 -12.89 16 7 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 8 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 9 N -0.97 -58.20 13.06 21.65 0.28 -57.92 16 10 Si 0.97 46.03 29.55 68.60 2.03 48.05 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 14 C 0.14 3.50 5.06 86.38 0.44 3.94 16 15 N -0.71 -12.72 5.28 -463.06 -2.45 -15.16 16 16 C 0.50 9.81 7.69 87.66 0.67 10.48 16 17 O -0.58 -17.25 15.35 -3.03 -0.05 -17.30 16 18 C -0.14 -1.40 5.24 29.85 0.16 -1.24 16 19 C 0.15 2.49 2.13 44.99 0.10 2.59 16 20 H 0.05 1.33 7.39 -2.39 -0.02 1.31 16 21 C -0.15 -1.79 9.48 71.98 0.68 -1.11 16 22 N -0.70 -11.77 4.16 -442.54 -1.84 -13.61 16 23 C 0.52 11.67 6.97 87.66 0.61 12.28 16 24 O -0.59 -18.75 14.87 -3.05 -0.05 -18.80 16 25 C -0.11 -1.75 3.29 -10.82 -0.04 -1.78 16 26 C -0.11 -1.76 6.30 31.69 0.20 -1.56 16 27 C -0.12 -1.69 6.91 31.91 0.22 -1.47 16 28 C -0.13 -2.07 6.83 31.67 0.22 -1.85 16 29 C -0.12 -2.11 6.40 31.32 0.20 -1.91 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.04 1.32 7.18 -2.39 -0.02 1.30 16 32 H 0.08 1.46 7.18 -2.39 -0.02 1.44 16 33 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.38 19.58 6.85 -92.71 -0.63 18.94 16 36 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.42 4.89 7.65 -92.71 -0.71 4.18 16 40 H 0.14 0.42 8.14 -2.38 -0.02 0.40 16 41 H 0.14 0.73 8.14 -2.39 -0.02 0.72 16 42 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.41 4.58 8.59 -92.71 -0.80 3.78 16 46 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 47 H 0.04 1.01 7.85 -2.39 -0.02 0.99 16 48 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 53 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 54 H 0.06 1.42 6.39 -2.38 -0.02 1.40 16 Total: -1.00 -79.78 429.56 0.72 -79.05 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -1.25 Total: 31.65 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 5.87 Total: 2.77 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -5.83 Total: -125.43 kcal Atomic # 8 Polarization: -36.01 SS G_CDS: -0.09 Total: -36.10 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -79.78 0.72 -79.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319291171.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.748 kcal (2) G-P(sol) polarization free energy of solvation -79.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds