Wall clock time and date at job start Sat Apr 11 2020 05:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21273 * 119.99998 * 2 1 4 4 N 1.34771 * 119.99537 * 179.97438 * 2 1 3 5 5 C 1.46501 * 119.99816 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47403 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47142 * 60.00000 * 6 5 4 8 8 C 1.53000 * 109.46792 * 299.99960 * 6 5 4 9 9 C 1.50695 * 109.47093 * 180.02562 * 6 5 4 10 10 O 1.21286 * 120.00562 * 7.62682 * 9 6 5 11 11 N 1.34784 * 119.99994 * 187.62527 * 9 6 5 12 12 C 1.46926 * 120.62984 * 354.22428 * 11 9 6 13 13 C 1.53192 * 108.77651 * 233.61351 * 12 11 9 14 14 C 1.53043 * 109.30975 * 305.36150 * 13 12 11 15 15 C 1.53043 * 109.53825 * 61.36739 * 14 13 12 16 16 H 1.08997 * 109.50005 * 58.61377 * 15 14 13 17 17 C 1.52997 * 109.50050 * 178.68514 * 15 14 13 18 18 H 1.08995 * 109.47250 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47218 * 59.93105 * 17 15 14 20 20 N 1.46506 * 109.46939 * 299.93573 * 17 15 14 21 21 C 1.36937 * 120.00159 * 205.00001 * 20 17 15 22 22 H 1.08000 * 119.99715 * 359.97438 * 21 20 17 23 23 C 1.38809 * 120.00091 * 179.97438 * 21 20 17 24 24 N 1.31622 * 119.99849 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 119.99987 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47002 * 60.00655 * 25 23 21 27 27 H 1.48505 * 109.47188 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47447 * 300.00853 * 25 23 21 29 29 C 1.46937 * 120.60510 * 174.24501 * 11 9 6 30 30 H 1.08998 * 109.47154 * 240.00131 * 1 2 3 31 31 H 1.08998 * 109.46510 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.46819 * 119.99944 * 1 2 3 33 33 H 0.96997 * 120.00738 * 0.02562 * 4 2 1 34 34 H 1.09004 * 109.47115 * 59.99932 * 5 4 2 35 35 H 1.09004 * 109.47250 * 300.00508 * 5 4 2 36 36 H 1.08992 * 109.46959 * 188.00164 * 7 6 5 37 37 H 1.08998 * 109.46925 * 308.00546 * 7 6 5 38 38 H 1.09002 * 109.46984 * 68.00307 * 7 6 5 39 39 H 1.09000 * 109.47692 * 312.70291 * 8 6 5 40 40 H 1.09000 * 109.47454 * 72.70796 * 8 6 5 41 41 H 1.09006 * 109.46636 * 192.70234 * 8 6 5 42 42 H 1.08996 * 109.58557 * 113.82159 * 12 11 9 43 43 H 1.09004 * 109.70177 * 353.46929 * 12 11 9 44 44 H 1.08997 * 109.49652 * 185.41696 * 13 12 11 45 45 H 1.08997 * 109.49822 * 65.31304 * 13 12 11 46 46 H 1.09001 * 109.46448 * 301.34929 * 14 13 12 47 47 H 1.08994 * 109.45307 * 181.38007 * 14 13 12 48 48 H 1.09003 * 109.46870 * 180.02562 * 19 17 15 49 49 H 1.08995 * 109.47410 * 300.00392 * 19 17 15 50 50 H 1.09000 * 109.46563 * 60.00787 * 19 17 15 51 51 H 0.97002 * 119.99725 * 24.72446 * 20 17 15 52 52 H 0.96998 * 119.99552 * 180.02562 * 24 23 21 53 53 H 1.08995 * 109.61483 * 6.62499 * 29 11 9 54 54 H 1.08995 * 109.56127 * 246.18999 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0011 6 6 4.1559 -2.6098 0.0010 7 6 3.6463 -3.3308 -1.2487 8 6 3.6453 -3.3312 1.2499 9 6 5.6628 -2.6098 0.0022 10 8 6.2692 -1.5688 0.1425 11 7 6.3369 -3.7667 -0.1526 12 6 5.6219 -5.0494 -0.1970 13 6 6.2307 -5.9898 0.8479 14 6 7.7384 -6.1020 0.6103 15 6 8.3851 -4.7237 0.7658 16 1 8.1829 -4.3375 1.7648 17 6 9.8965 -4.8426 0.5604 18 1 10.3566 -3.8606 0.6708 19 6 10.1796 -5.3846 -0.8421 20 7 10.4546 -5.7575 1.5594 21 6 11.7696 -5.6512 1.9264 22 1 12.3954 -4.8931 1.4791 23 6 12.2981 -6.5177 2.8732 24 7 11.5355 -7.4419 3.4179 25 14 14.0921 -6.3731 3.3733 26 1 14.3398 -5.0244 3.9435 27 1 14.4070 -7.4070 4.3918 28 1 14.9558 -6.5731 2.1820 29 6 7.8007 -3.7683 -0.2796 30 1 -0.3633 -0.5138 0.8900 31 1 -0.3632 1.0277 -0.0005 32 1 -0.3633 -0.5138 -0.8900 33 1 1.6959 -2.0072 0.0005 34 1 4.0089 -0.6532 0.8911 35 1 4.0096 -0.6536 -0.8889 36 1 3.8881 -4.3913 -1.1801 37 1 2.5658 -3.2085 -1.3235 38 1 4.1221 -2.9060 -2.1326 39 1 3.8119 -2.7039 2.1256 40 1 2.5791 -3.5312 1.1437 41 1 4.1813 -4.2728 1.3701 42 1 5.7235 -5.4902 -1.1887 43 1 4.5668 -4.8900 0.0256 44 1 5.7742 -6.9756 0.7600 45 1 6.0483 -5.5915 1.8460 46 1 7.9205 -6.4770 -0.3968 47 1 8.1702 -6.7897 1.3374 48 1 11.2565 -5.4697 -0.9881 49 1 9.7197 -6.3667 -0.9517 50 1 9.7645 -4.7039 -1.5852 51 1 9.8915 -6.4360 1.9637 52 1 11.9048 -8.0472 4.0798 53 1 8.1839 -2.7622 -0.1097 54 1 8.0800 -4.1042 -1.2782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319818658.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:00 Heat of formation + Delta-G solvation = -84.197072 kcal Electronic energy + Delta-G solvation = -31219.462729 eV Core-core repulsion = 27190.568073 eV Total energy + Delta-G solvation = -4028.894656 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.05487 -40.59260 -39.41724 -37.54400 -36.97302 -34.90149 -34.00837 -33.08508 -31.68042 -30.72173 -29.32071 -28.34372 -27.36984 -26.79252 -26.09894 -24.52990 -23.37620 -22.34276 -21.46518 -20.24090 -19.76928 -19.26174 -18.01892 -17.85110 -16.97383 -16.72961 -16.67881 -16.56793 -16.21359 -15.96947 -15.68651 -15.50550 -15.24494 -14.94729 -14.79350 -14.56044 -14.24975 -14.20612 -14.01879 -13.81552 -13.40594 -13.28384 -13.25894 -13.13663 -12.97481 -12.95756 -12.83308 -12.74548 -12.49267 -12.44245 -12.16689 -12.14731 -12.11722 -11.85375 -11.65560 -11.57412 -11.28455 -11.13358 -11.03094 -10.90087 -10.58501 -10.17632 -9.61896 -8.99905 -7.94686 -5.21535 1.44921 1.47411 1.53161 1.54009 1.65498 1.81262 2.36567 2.55470 3.27401 3.38211 3.55958 3.72682 3.78945 3.82207 3.88842 3.96514 3.98522 4.05420 4.26268 4.30907 4.39653 4.51266 4.54045 4.55381 4.57369 4.62999 4.68482 4.70925 4.73376 4.76129 4.80058 4.81544 4.87557 4.90084 4.93953 5.06743 5.11653 5.13103 5.14909 5.25123 5.27743 5.29941 5.39780 5.43347 5.45740 5.52421 5.54673 5.68542 6.28582 6.39854 6.57794 7.09944 7.28898 7.34957 8.12264 8.36424 9.28488 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023413 B = 0.002198 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.613037 B =12734.166565 C =12995.861547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.499 3.501 3 O -0.609 6.609 4 N -0.709 5.709 5 C 0.152 3.848 6 C -0.080 4.080 7 C -0.156 4.156 8 C -0.155 4.155 9 C 0.516 3.484 10 O -0.592 6.592 11 N -0.599 5.599 12 C 0.083 3.917 13 C -0.132 4.132 14 C -0.110 4.110 15 C -0.088 4.088 16 H 0.041 0.959 17 C 0.171 3.829 18 H 0.027 0.973 19 C -0.155 4.155 20 N -0.733 5.733 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.075 4.075 24 N -0.967 5.967 25 Si 0.969 3.031 26 H -0.283 1.283 27 H -0.294 1.294 28 H -0.278 1.278 29 C 0.123 3.877 30 H 0.115 0.885 31 H 0.083 0.917 32 H 0.118 0.882 33 H 0.420 0.580 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.109 0.891 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.135 0.865 44 H 0.104 0.896 45 H 0.054 0.946 46 H 0.078 0.922 47 H 0.044 0.956 48 H 0.031 0.969 49 H 0.057 0.943 50 H 0.071 0.929 51 H 0.376 0.624 52 H 0.250 0.750 53 H 0.063 0.937 54 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.028 2.683 -11.883 31.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.288 3.712 3 O -0.490 6.490 4 N -0.364 5.364 5 C 0.026 3.974 6 C -0.084 4.084 7 C -0.213 4.213 8 C -0.212 4.212 9 C 0.305 3.695 10 O -0.472 6.472 11 N -0.330 5.330 12 C -0.037 4.037 13 C -0.170 4.170 14 C -0.148 4.148 15 C -0.109 4.109 16 H 0.059 0.941 17 C 0.062 3.938 18 H 0.045 0.955 19 C -0.214 4.214 20 N -0.375 5.375 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.267 4.267 24 N -0.618 5.618 25 Si 0.798 3.202 26 H -0.210 1.210 27 H -0.220 1.220 28 H -0.205 1.205 29 C 0.000 4.000 30 H 0.134 0.866 31 H 0.102 0.898 32 H 0.136 0.864 33 H 0.260 0.740 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.152 0.848 44 H 0.122 0.878 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.062 0.938 48 H 0.050 0.950 49 H 0.076 0.924 50 H 0.089 0.911 51 H 0.210 0.790 52 H 0.059 0.941 53 H 0.082 0.918 54 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -28.116 4.002 -11.808 30.756 hybrid contribution 1.729 -0.184 1.002 2.007 sum -26.387 3.817 -10.806 28.768 Atomic orbital electron populations 1.21932 0.87274 1.06064 1.06893 1.21805 0.92607 0.82651 0.74097 1.90739 1.72494 1.33793 1.51989 1.45879 1.05940 1.09587 1.74951 1.20763 0.80795 0.94882 1.00942 1.20870 0.89809 0.96488 1.01184 1.22379 1.03262 1.02081 0.93590 1.22227 1.04183 1.00726 0.94079 1.21036 0.90772 0.82822 0.74892 1.90713 1.71420 1.33553 1.51539 1.48096 1.06816 1.07085 1.71011 1.22771 0.98347 0.81770 1.00802 1.21968 0.94715 1.01180 0.99102 1.21519 0.95836 0.95094 1.02304 1.21517 0.94508 0.96864 0.97967 0.94063 1.20345 0.91725 0.92245 0.89487 0.95497 1.22369 1.00474 1.01284 0.97296 1.42620 1.08714 1.38714 1.47415 1.19554 0.88373 1.12137 1.17005 0.91314 1.25474 1.01934 0.98836 1.00504 1.69790 1.36553 1.22665 1.32805 0.85283 0.80611 0.76781 0.77524 1.20962 1.21998 1.20461 1.21592 0.79606 0.99551 0.99283 0.86642 0.89778 0.86394 0.74012 0.93975 0.93465 0.87885 0.88483 0.92774 0.93339 0.87203 0.89725 0.88666 0.84770 0.87781 0.92693 0.90322 0.93762 0.95004 0.92450 0.91063 0.79042 0.94084 0.91831 0.89041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 10.32 71.24 0.74 -0.21 16 2 C 0.50 8.57 7.94 87.66 0.70 9.26 16 3 O -0.61 -18.52 17.09 -3.01 -0.05 -18.57 16 4 N -0.71 -8.75 4.93 -463.05 -2.28 -11.03 16 5 C 0.15 3.12 3.85 86.38 0.33 3.45 16 6 C -0.08 -1.21 0.50 -52.93 -0.03 -1.24 16 7 C -0.16 -1.16 7.90 71.98 0.57 -0.59 16 8 C -0.16 -1.60 7.73 71.98 0.56 -1.05 16 9 C 0.52 13.07 6.47 87.65 0.57 13.64 16 10 O -0.59 -21.52 15.40 -3.05 -0.05 -21.56 16 11 N -0.60 -13.27 2.96 -818.87 -2.42 -15.69 16 12 C 0.08 1.11 3.94 86.36 0.34 1.45 16 13 C -0.13 -2.36 5.92 30.67 0.18 -2.18 16 14 C -0.11 -2.97 4.63 30.62 0.14 -2.83 16 15 C -0.09 -2.87 2.33 -10.71 -0.02 -2.89 16 16 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 17 C 0.17 6.80 2.72 44.99 0.12 6.92 16 18 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 19 C -0.15 -5.25 8.79 71.98 0.63 -4.62 16 20 N -0.73 -37.01 5.04 -322.94 -1.63 -38.64 16 21 C -0.24 -13.50 9.93 84.03 0.83 -12.67 16 22 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 23 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 24 N -0.97 -59.20 13.06 21.65 0.28 -58.92 16 25 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 26 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 27 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 28 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 29 C 0.12 3.40 5.51 86.36 0.48 3.88 16 30 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 31 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 32 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.42 1.33 6.32 -92.71 -0.59 0.74 16 34 H 0.04 1.18 8.02 -2.38 -0.02 1.16 16 35 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.10 0.37 4.61 -2.39 -0.01 0.36 16 37 H 0.10 0.16 6.67 -2.39 -0.02 0.15 16 38 H 0.05 0.59 8.13 -2.39 -0.02 0.57 16 39 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 40 H 0.11 0.24 7.20 -2.39 -0.02 0.22 16 41 H 0.08 0.82 4.96 -2.38 -0.01 0.81 16 42 H 0.10 0.91 8.10 -2.39 -0.02 0.89 16 43 H 0.14 0.96 2.62 -2.38 -0.01 0.96 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.05 1.13 7.98 -2.39 -0.02 1.12 16 46 H 0.08 1.91 6.50 -2.39 -0.02 1.90 16 47 H 0.04 1.51 6.47 -2.39 -0.02 1.49 16 48 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.06 1.86 6.46 -2.39 -0.02 1.85 16 50 H 0.07 1.93 6.32 -2.39 -0.02 1.91 16 51 H 0.38 19.97 6.05 -92.71 -0.56 19.41 16 52 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 53 H 0.06 2.13 7.00 -2.39 -0.02 2.11 16 54 H 0.09 2.19 6.18 -2.39 -0.01 2.17 16 Total: -1.00 -86.23 402.19 2.25 -83.98 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -0.23 Total: 24.92 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 6.60 Total: 6.42 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -6.05 Total: -124.28 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -0.10 Total: -40.14 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -86.23 2.25 -83.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319818658.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.218 kcal (2) G-P(sol) polarization free energy of solvation -86.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds