Wall clock time and date at job start Sat Apr 11 2020 05:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46806 * 2 1 4 4 N 1.46497 * 109.47271 * 239.99799 * 2 1 3 5 5 C 1.36944 * 119.99992 * 84.99834 * 4 2 1 6 6 H 1.07997 * 119.99717 * 0.02562 * 5 4 2 7 7 C 1.38810 * 119.99915 * 179.97438 * 5 4 2 8 8 N 1.31623 * 119.99877 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00177 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47522 * 89.99525 * 9 7 5 11 11 H 1.48501 * 109.47188 * 209.99714 * 9 7 5 12 12 H 1.48501 * 109.46939 * 329.99764 * 9 7 5 13 13 C 1.53003 * 109.46863 * 119.99644 * 2 1 3 14 14 H 1.09003 * 109.49385 * 179.97438 * 13 2 1 15 15 C 1.53037 * 109.52263 * 59.85850 * 13 2 1 16 16 C 1.53038 * 109.53876 * 178.66581 * 15 13 2 17 17 C 1.52764 * 109.38398 * 61.23747 * 16 15 13 18 18 N 1.46927 * 109.00591 * 305.59101 * 17 16 15 19 19 C 1.34777 * 120.62690 * 233.58001 * 18 17 16 20 20 O 1.21278 * 119.99854 * 179.71790 * 19 18 17 21 21 C 1.50703 * 120.00161 * 359.72483 * 19 18 17 22 22 C 1.53000 * 109.46912 * 179.97438 * 21 19 18 23 23 C 1.52997 * 109.47060 * 179.97438 * 22 21 19 24 24 C 1.50697 * 109.47466 * 180.02562 * 23 22 21 25 25 O 1.21282 * 120.00011 * 0.02562 * 24 23 22 26 26 N 1.34777 * 120.00369 * 180.02562 * 24 23 22 27 27 C 1.46505 * 120.00115 * 180.02562 * 26 24 23 28 28 C 1.46504 * 119.99736 * 359.97438 * 26 24 23 29 29 C 1.46923 * 118.74168 * 53.30853 * 18 17 16 30 30 H 1.08997 * 109.47036 * 60.00300 * 1 2 3 31 31 H 1.09005 * 109.47155 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47338 * 300.00233 * 1 2 3 33 33 H 0.97005 * 119.99824 * 265.00349 * 4 2 1 34 34 H 0.96996 * 119.99729 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.46135 * 298.68312 * 15 13 2 36 36 H 1.08997 * 109.46450 * 58.65489 * 15 13 2 37 37 H 1.09005 * 109.50245 * 181.31520 * 16 15 13 38 38 H 1.09000 * 109.49759 * 301.41324 * 16 15 13 39 39 H 1.08994 * 109.51034 * 185.70660 * 17 16 15 40 40 H 1.08998 * 109.42924 * 65.42828 * 17 16 15 41 41 H 1.09001 * 109.46980 * 59.99654 * 21 19 18 42 42 H 1.08992 * 109.47158 * 299.99760 * 21 19 18 43 43 H 1.09002 * 109.47398 * 300.00078 * 22 21 19 44 44 H 1.09001 * 109.47194 * 60.00258 * 22 21 19 45 45 H 1.09002 * 109.47153 * 300.00319 * 23 22 21 46 46 H 1.08998 * 109.47533 * 59.99948 * 23 22 21 47 47 H 1.08992 * 109.46947 * 90.00096 * 27 26 24 48 48 H 1.08998 * 109.46420 * 209.99986 * 27 26 24 49 49 H 1.08995 * 109.46904 * 329.99992 * 27 26 24 50 50 H 1.08996 * 109.46784 * 90.00263 * 28 26 24 51 51 H 1.09003 * 109.47146 * 209.99886 * 28 26 24 52 52 H 1.08994 * 109.47096 * 330.00470 * 28 26 24 53 53 H 1.09005 * 109.58150 * 66.42780 * 29 18 17 54 54 H 1.08989 * 109.59056 * 186.71147 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3758 6 1 1.8926 1.0404 -2.4242 7 6 2.6124 -0.6618 -3.5090 8 7 2.7376 -0.0053 -4.6429 9 14 3.0567 -2.4742 -3.4250 10 1 1.8597 -3.2928 -3.7449 11 1 4.1325 -2.7661 -4.4062 12 1 3.5312 -2.8047 -2.0572 13 6 2.0400 -0.7212 1.2493 14 1 3.1300 -0.7218 1.2495 15 6 1.5275 -2.1632 1.2524 16 6 2.0646 -2.8947 2.4847 17 6 1.5594 -2.1989 3.7474 18 7 1.9186 -0.7756 3.6858 19 6 2.5969 -0.1943 4.6950 20 8 2.8920 0.9802 4.6299 21 6 2.9888 -1.0038 5.9042 22 6 3.7437 -0.1121 6.8921 23 6 4.1410 -0.9337 8.1200 24 6 4.8840 -0.0553 9.0933 25 8 5.0764 1.1130 8.8310 26 7 5.3348 -0.5680 10.2554 27 6 6.0566 0.2861 11.2019 28 6 5.1019 -1.9792 10.5726 29 6 1.5297 0.0005 2.5005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6318 -1.1525 34 1 3.0609 -0.4626 -5.4349 35 1 0.4379 -2.1614 1.2775 36 1 1.8690 -2.6719 0.3509 37 1 1.7184 -3.9282 2.4741 38 1 3.1544 -2.8754 2.4730 39 1 2.0208 -2.6546 4.6235 40 1 0.4759 -2.3001 3.8083 41 1 3.6308 -1.8292 5.5964 42 1 2.0929 -1.3993 6.3826 43 1 4.6397 0.2832 6.4134 44 1 3.1020 0.7135 7.1999 45 1 3.2448 -1.3286 8.5985 46 1 4.7825 -1.7596 7.8126 47 1 5.3475 0.7456 11.8903 48 1 6.7701 -0.3165 11.7638 49 1 6.5891 1.0645 10.6556 50 1 5.9320 -2.5777 10.1973 51 1 5.0256 -2.1010 11.6531 52 1 4.1750 -2.3089 10.1034 53 1 0.4435 0.0824 2.4577 54 1 1.9692 0.9963 2.5553 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319823387.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:26 Heat of formation + Delta-G solvation = -94.302610 kcal Electronic energy + Delta-G solvation = -29993.174302 eV Core-core repulsion = 25963.841438 eV Total energy + Delta-G solvation = -4029.332865 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.39501 -40.82852 -39.33556 -37.02136 -36.56917 -35.35974 -34.58123 -33.13190 -32.25345 -30.55917 -29.48019 -28.45669 -27.05818 -26.11695 -26.02306 -24.21052 -23.19405 -22.54433 -20.53354 -20.20353 -19.69445 -19.63773 -18.07734 -17.90496 -17.30669 -17.08558 -16.80125 -16.56121 -16.46415 -15.92867 -15.68469 -15.39155 -15.20982 -14.98913 -14.61699 -14.40166 -14.32192 -14.08433 -13.87215 -13.76367 -13.70137 -13.44462 -13.39936 -13.26756 -13.03349 -12.89831 -12.77277 -12.74948 -12.52845 -12.41824 -12.22641 -12.12209 -11.91215 -11.82716 -11.71030 -11.66089 -11.51717 -11.15365 -10.95324 -10.93291 -10.68812 -9.67169 -9.57804 -9.31815 -8.02502 -5.35584 1.34168 1.39591 1.46595 1.62769 1.68377 1.97839 2.18440 2.47637 3.28255 3.52265 3.57944 3.58802 3.82334 3.87790 4.00570 4.06712 4.06844 4.23325 4.29120 4.31980 4.37574 4.40757 4.49860 4.50829 4.58743 4.61751 4.62496 4.66660 4.70177 4.73817 4.79878 4.83853 4.89703 4.90836 4.94263 5.02367 5.03828 5.11036 5.13930 5.16902 5.24259 5.37101 5.38843 5.44125 5.53838 5.58828 5.66155 5.77122 6.21764 6.37096 6.50674 7.08150 7.18613 7.24878 7.84280 8.05067 9.19470 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020825 B = 0.001903 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.184667 B =14713.794509 C =14770.363415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.174 3.826 3 H 0.027 0.973 4 N -0.747 5.747 5 C -0.229 4.229 6 H 0.050 0.950 7 C -0.069 4.069 8 N -0.986 5.986 9 Si 0.957 3.043 10 H -0.273 1.273 11 H -0.297 1.297 12 H -0.252 1.252 13 C -0.093 4.093 14 H 0.048 0.952 15 C -0.117 4.117 16 C -0.131 4.131 17 C 0.104 3.896 18 N -0.610 5.610 19 C 0.499 3.501 20 O -0.599 6.599 21 C -0.125 4.125 22 C -0.088 4.088 23 C -0.125 4.125 24 C 0.495 3.505 25 O -0.598 6.598 26 N -0.626 5.626 27 C 0.079 3.921 28 C 0.069 3.931 29 C 0.122 3.878 30 H 0.028 0.972 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.367 0.633 34 H 0.257 0.743 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.105 0.895 38 H 0.056 0.944 39 H 0.123 0.877 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.136 0.864 43 H 0.037 0.963 44 H 0.044 0.956 45 H 0.133 0.867 46 H 0.127 0.873 47 H 0.056 0.944 48 H 0.098 0.902 49 H 0.048 0.952 50 H 0.070 0.930 51 H 0.087 0.913 52 H 0.096 0.904 53 H 0.088 0.912 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.962 -16.293 37.278 40.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.066 3.934 3 H 0.045 0.955 4 N -0.392 5.392 5 C -0.360 4.360 6 H 0.068 0.932 7 C -0.260 4.260 8 N -0.637 5.637 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.224 1.224 12 H -0.177 1.177 13 C -0.113 4.113 14 H 0.067 0.933 15 C -0.155 4.155 16 C -0.169 4.169 17 C -0.017 4.017 18 N -0.342 5.342 19 C 0.290 3.710 20 O -0.480 6.480 21 C -0.164 4.164 22 C -0.126 4.126 23 C -0.164 4.164 24 C 0.285 3.715 25 O -0.479 6.479 26 N -0.359 5.359 27 C -0.064 4.064 28 C -0.073 4.073 29 C -0.002 4.002 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.201 0.799 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.123 0.877 38 H 0.075 0.925 39 H 0.141 0.859 40 H 0.109 0.891 41 H 0.145 0.855 42 H 0.153 0.847 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.151 0.849 46 H 0.145 0.855 47 H 0.075 0.925 48 H 0.116 0.884 49 H 0.067 0.933 50 H 0.089 0.911 51 H 0.106 0.894 52 H 0.114 0.886 53 H 0.106 0.894 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.708 -14.928 37.018 39.921 hybrid contribution 0.713 0.195 -1.175 1.388 sum 0.005 -14.734 35.843 38.753 Atomic orbital electron populations 1.22357 0.96666 1.01999 1.00544 1.20313 0.93556 0.94355 0.85160 0.95486 1.42776 1.80043 1.09672 1.06725 1.19033 1.35136 0.94324 0.87535 0.93170 1.25544 1.02382 1.02947 0.95087 1.69903 1.54811 1.37821 1.01180 0.85380 0.77846 0.80422 0.77964 1.19880 1.22424 1.17655 1.21574 0.99382 0.96999 0.93361 0.93344 1.21623 1.01799 0.93395 0.98643 1.21874 1.00932 1.00522 0.93601 1.22035 1.02118 0.77858 0.99713 1.48304 1.55758 1.12242 1.17890 1.21632 0.76348 0.87717 0.85352 1.90716 1.56479 1.19610 1.81202 1.21745 1.04028 0.98749 0.91881 1.20968 0.99600 0.97501 0.94578 1.21719 1.02659 0.98399 0.93639 1.21549 0.78988 0.88161 0.82796 1.90725 1.59449 1.20363 1.77372 1.48020 1.56216 1.13058 1.18648 1.21700 0.96877 0.95437 0.92345 1.22159 1.03413 0.78239 1.03468 1.21504 1.00380 0.94788 0.83503 0.95303 0.91594 0.90975 0.79853 0.93431 0.89884 0.93364 0.87659 0.92482 0.85902 0.89141 0.85510 0.84657 0.94385 0.93748 0.84942 0.85512 0.92505 0.88371 0.93315 0.91128 0.89391 0.88585 0.89388 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.21 8.79 71.98 0.63 -4.57 16 2 C 0.17 6.76 2.72 44.99 0.12 6.89 16 3 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16 4 N -0.75 -35.35 4.85 -322.94 -1.57 -36.91 16 5 C -0.23 -13.46 10.41 84.03 0.87 -12.59 16 6 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 7 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 8 N -0.99 -64.80 13.97 21.65 0.30 -64.50 16 9 Si 0.96 45.90 27.74 68.60 1.90 47.80 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 12 H -0.25 -10.84 6.52 99.48 0.65 -10.20 16 13 C -0.09 -2.83 2.33 -10.72 -0.02 -2.85 16 14 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 15 C -0.12 -2.75 4.63 30.62 0.14 -2.61 16 16 C -0.13 -1.95 6.06 30.53 0.19 -1.76 16 17 C 0.10 1.15 6.31 86.22 0.54 1.70 16 18 N -0.61 -12.81 2.98 -819.76 -2.44 -15.25 16 19 C 0.50 12.06 7.70 87.66 0.67 12.73 16 20 O -0.60 -21.85 15.39 -3.02 -0.05 -21.90 16 21 C -0.12 -1.50 4.05 29.85 0.12 -1.38 16 22 C -0.09 -1.62 3.79 30.59 0.12 -1.50 16 23 C -0.13 -1.16 4.25 29.85 0.13 -1.04 16 24 C 0.49 9.04 7.67 87.66 0.67 9.71 16 25 O -0.60 -18.31 15.56 -3.04 -0.05 -18.36 16 26 N -0.63 -7.18 3.27 -871.90 -2.85 -10.04 16 27 C 0.08 0.89 10.44 127.77 1.33 2.23 16 28 C 0.07 0.08 10.24 127.77 1.31 1.39 16 29 C 0.12 3.30 5.50 86.36 0.48 3.78 16 30 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.97 6.46 -2.38 -0.02 1.96 16 32 H 0.07 1.95 6.32 -2.39 -0.02 1.93 16 33 H 0.37 16.33 3.92 -92.70 -0.36 15.97 16 34 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 35 H 0.08 1.73 6.50 -2.39 -0.02 1.72 16 36 H 0.05 1.34 6.47 -2.39 -0.02 1.32 16 37 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.12 0.42 5.93 -2.39 -0.01 0.41 16 40 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.13 0.75 7.68 -2.39 -0.02 0.73 16 42 H 0.14 0.54 7.95 -2.39 -0.02 0.52 16 43 H 0.04 0.99 8.06 -2.39 -0.02 0.97 16 44 H 0.04 1.10 8.06 -2.39 -0.02 1.08 16 45 H 0.13 0.25 7.40 -2.39 -0.02 0.24 16 46 H 0.13 0.41 8.11 -2.39 -0.02 0.39 16 47 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.10 0.49 8.07 -2.39 -0.02 0.47 16 49 H 0.05 0.83 7.42 -2.39 -0.02 0.82 16 50 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 51 H 0.09 -0.13 8.07 -2.39 -0.02 -0.14 16 52 H 0.10 -0.26 6.44 -2.39 -0.02 -0.28 16 53 H 0.09 2.09 6.18 -2.38 -0.01 2.07 16 54 H 0.06 2.01 7.00 -2.39 -0.02 1.99 16 Total: -1.00 -94.20 412.39 3.48 -90.72 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.46 Total: 21.99 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 7.77 Total: 6.45 kcal Atomic # 7 Polarization: -120.14 SS G_CDS: -6.56 Total: -126.70 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -0.09 Total: -40.26 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.90 Total: 47.80 kcal Total: -94.20 3.48 -90.72 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319823387.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.586 kcal (2) G-P(sol) polarization free energy of solvation -94.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds