Wall clock time and date at job start Sat Apr 11 2020 05:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47242 * 2 1 4 4 C 1.52995 * 109.47060 * 120.00488 * 2 1 3 5 5 H 1.08999 * 109.47022 * 300.00065 * 4 2 1 6 6 C 1.53000 * 109.47396 * 180.02562 * 4 2 1 7 7 C 1.50699 * 109.47509 * 59.99972 * 4 2 1 8 8 O 1.21281 * 119.99843 * 359.97438 * 7 4 2 9 9 N 1.34778 * 120.00148 * 180.02562 * 7 4 2 10 10 C 1.46501 * 119.99751 * 179.97438 * 9 7 4 11 11 H 1.09001 * 108.82961 * 33.50085 * 10 9 7 12 12 C 1.54176 * 108.85369 * 274.99772 * 10 9 7 13 13 C 1.53816 * 111.96955 * 197.68121 * 12 10 9 14 14 C 1.50817 * 111.62087 * 319.04241 * 13 12 10 15 15 N 1.47628 * 108.04513 * 95.06209 * 14 13 12 16 16 C 1.46896 * 111.00424 * 150.32338 * 15 14 13 17 17 C 1.50699 * 109.46867 * 57.96003 * 16 15 14 18 18 O 1.21295 * 120.00232 * 5.36129 * 17 16 15 19 19 N 1.34776 * 119.99973 * 185.36940 * 17 16 15 20 20 C 1.37102 * 119.99824 * 180.02562 * 19 17 16 21 21 H 1.07992 * 120.00516 * 359.97438 * 20 19 17 22 22 C 1.38960 * 119.99837 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99707 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99732 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.46936 * 90.00603 * 24 22 20 26 26 H 1.48499 * 109.46706 * 210.00323 * 24 22 20 27 27 H 1.48494 * 109.47299 * 330.00427 * 24 22 20 28 28 C 1.39776 * 114.76734 * 277.18832 * 15 14 13 29 29 C 1.50750 * 108.85269 * 151.90906 * 10 9 7 30 30 H 1.08999 * 109.47256 * 299.99590 * 1 2 3 31 31 H 1.09003 * 109.47367 * 59.99664 * 1 2 3 32 32 H 1.09001 * 109.47192 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46831 * 240.00097 * 2 1 3 34 34 H 1.09001 * 109.47053 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47286 * 300.00406 * 3 2 1 36 36 H 1.08999 * 109.46660 * 60.00045 * 3 2 1 37 37 H 1.09001 * 109.47056 * 59.99714 * 6 4 2 38 38 H 1.08993 * 109.47647 * 179.97438 * 6 4 2 39 39 H 1.08999 * 109.47057 * 300.00005 * 6 4 2 40 40 H 0.96989 * 120.00091 * 359.97438 * 9 7 4 41 41 H 1.09001 * 108.98183 * 77.04075 * 12 10 9 42 42 H 1.08995 * 108.98137 * 318.32012 * 12 10 9 43 43 H 1.09001 * 109.05157 * 198.49331 * 13 12 10 44 44 H 1.08998 * 108.99828 * 79.55640 * 13 12 10 45 45 H 1.09008 * 109.74838 * 335.42777 * 14 13 12 46 46 H 1.08998 * 109.75012 * 214.69860 * 14 13 12 47 47 H 1.08999 * 109.47735 * 177.95830 * 16 15 14 48 48 H 1.09001 * 109.47250 * 297.96304 * 16 15 14 49 49 H 0.97003 * 120.00179 * 359.97438 * 19 17 16 50 50 H 0.97002 * 119.99321 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.02779 * 182.86701 * 28 15 14 52 52 H 1.09003 * 109.02097 * 301.68390 * 28 15 14 53 53 H 1.08998 * 109.54675 * 93.95376 * 29 10 9 54 54 H 1.08998 * 109.54247 * 333.68191 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 1 1.6766 -0.2076 2.1391 6 6 3.5699 -0.7208 1.2495 7 6 1.5376 -2.1421 1.2491 8 8 0.8400 -2.5386 0.3397 9 7 1.8628 -2.9719 2.2602 10 6 1.3740 -4.3530 2.2603 11 1 1.3162 -4.7058 1.2306 12 6 -0.0389 -4.3814 2.8768 13 6 -0.4475 -5.7983 3.3142 14 6 -0.0222 -6.8356 2.3054 15 7 1.2784 -7.3857 2.7358 16 6 1.4325 -8.7787 2.2956 17 6 1.3050 -8.8485 0.7956 18 8 1.2028 -7.8283 0.1475 19 7 1.3043 -10.0444 0.1743 20 6 1.1888 -10.1079 -1.1904 21 1 1.0980 -9.1996 -1.7675 22 6 1.1886 -11.3409 -1.8311 23 7 1.0774 -11.4017 -3.1391 24 14 1.3464 -12.9121 -0.8330 25 1 -0.0051 -13.3913 -0.4473 26 1 2.0257 -13.9505 -1.6487 27 1 2.1441 -12.6433 0.3903 28 6 2.3884 -6.6191 2.3700 29 6 2.3530 -5.2161 3.0147 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.9329 0.3070 1.2498 38 1 3.9333 -1.2343 2.1396 39 1 3.9337 -1.2343 0.3595 40 1 2.4204 -2.6548 2.9876 41 1 -0.7547 -4.0176 2.1396 42 1 -0.0602 -3.7224 3.7448 43 1 -1.5308 -5.8367 3.4288 44 1 0.0196 -6.0222 4.2732 45 1 0.0801 -6.3740 1.3232 46 1 -0.7636 -7.6335 2.2626 47 1 2.4136 -9.1478 2.5943 48 1 0.6579 -9.3928 2.7550 49 1 1.3862 -10.8603 0.6925 50 1 1.0777 -12.2625 -3.5863 51 1 3.2956 -7.1332 2.6875 52 1 2.4040 -6.5113 1.2854 53 1 2.0384 -5.3008 4.0549 54 1 3.3455 -4.7681 2.9678 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327158293.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:55 Heat of formation + Delta-G solvation = -104.408165 kcal Electronic energy + Delta-G solvation = -31173.049736 eV Core-core repulsion = 27143.278662 eV Total energy + Delta-G solvation = -4029.771074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.62329 -40.94102 -39.29061 -37.28882 -36.44196 -35.81609 -34.11901 -33.78735 -32.75289 -31.32531 -29.35402 -28.13969 -26.98020 -26.25171 -25.30890 -24.77228 -22.32721 -21.97998 -21.32498 -20.71759 -20.35803 -20.14067 -18.23330 -17.81200 -17.57952 -16.95976 -16.73549 -16.36133 -16.01715 -15.88268 -15.64279 -15.48522 -15.34414 -15.17555 -14.90537 -14.72075 -14.35932 -14.13483 -13.98199 -13.80186 -13.31882 -13.15289 -13.13104 -13.04005 -12.92628 -12.82688 -12.73674 -12.47549 -12.45059 -12.23743 -12.13319 -12.02095 -11.93772 -11.82587 -11.64992 -11.60811 -11.53837 -11.48342 -11.20572 -10.92883 -10.48840 -10.26706 -10.01311 -9.03070 -8.45521 -6.06553 1.27288 1.33184 1.42399 1.68937 1.91418 2.20136 2.21807 2.94196 2.99787 3.11475 3.63181 3.72016 3.81654 3.87348 3.95315 4.07296 4.12701 4.22928 4.26814 4.27509 4.41358 4.45420 4.52878 4.54480 4.58464 4.59934 4.64538 4.79655 4.80370 4.83854 4.89668 4.91163 4.94926 4.96627 5.02371 5.06723 5.11671 5.16957 5.19633 5.21807 5.33944 5.40314 5.43840 5.49695 5.50631 5.53775 5.65568 5.89498 6.03009 6.39878 6.55156 6.63491 6.85078 7.35884 7.37498 7.94007 8.72675 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015497 B = 0.002507 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.395423 B =11166.602411 C =12071.105099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.080 4.080 3 C -0.141 4.141 4 C -0.097 4.097 5 H 0.124 0.876 6 C -0.143 4.143 7 C 0.503 3.497 8 O -0.584 6.584 9 N -0.713 5.713 10 C 0.148 3.852 11 H 0.030 0.970 12 C -0.116 4.116 13 C -0.102 4.102 14 C 0.061 3.939 15 N -0.506 5.506 16 C 0.050 3.950 17 C 0.414 3.586 18 O -0.618 6.618 19 N -0.589 5.589 20 C -0.329 4.329 21 H 0.047 0.953 22 C -0.019 4.019 23 N -0.937 5.937 24 Si 0.969 3.031 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.227 1.227 28 C 0.057 3.943 29 C -0.106 4.106 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.039 0.961 40 H 0.416 0.584 41 H 0.029 0.971 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.098 0.902 45 H 0.019 0.981 46 H 0.060 0.940 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.086 0.914 52 H 0.003 0.997 53 H 0.105 0.895 54 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.954 18.746 22.683 29.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.099 4.099 3 C -0.198 4.198 4 C -0.118 4.118 5 H 0.142 0.858 6 C -0.201 4.201 7 C 0.291 3.709 8 O -0.464 6.464 9 N -0.366 5.366 10 C 0.043 3.957 11 H 0.049 0.951 12 C -0.154 4.154 13 C -0.140 4.140 14 C -0.067 4.067 15 N -0.228 5.228 16 C -0.082 4.082 17 C 0.201 3.799 18 O -0.504 6.504 19 N -0.231 5.231 20 C -0.459 4.459 21 H 0.065 0.935 22 C -0.217 4.217 23 N -0.578 5.578 24 Si 0.788 3.212 25 H -0.181 1.181 26 H -0.200 1.200 27 H -0.150 1.150 28 C -0.073 4.073 29 C -0.144 4.144 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.254 0.746 41 H 0.048 0.952 42 H 0.107 0.893 43 H 0.090 0.910 44 H 0.117 0.883 45 H 0.037 0.963 46 H 0.079 0.921 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.226 0.774 50 H 0.089 0.911 51 H 0.104 0.896 52 H 0.021 0.979 53 H 0.124 0.876 54 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.394 19.078 21.909 29.382 hybrid contribution -0.091 -1.124 -1.836 2.154 sum 4.304 17.954 20.074 27.273 Atomic orbital electron populations 1.22014 0.95810 1.02028 1.01598 1.20906 0.95713 0.96964 0.96281 1.21866 1.01760 0.93597 1.02598 1.21428 0.98598 0.90247 1.01564 0.85816 1.21866 0.91310 1.04379 1.02513 1.21486 0.79182 0.89147 0.81047 1.90688 1.39826 1.78035 1.37858 1.46146 1.53395 1.11591 1.25426 1.20775 0.94276 0.81591 0.99093 0.95145 1.22185 0.94929 0.98068 1.00263 1.21317 1.01151 0.91932 0.99609 1.21801 0.90113 0.97772 0.96974 1.59650 1.02597 1.01251 1.59305 1.22367 1.06338 0.92386 0.87062 1.22503 0.81361 0.83017 0.92999 1.90569 1.55399 1.35338 1.69076 1.42213 1.66648 1.07969 1.06237 1.18970 1.49780 0.94564 0.82552 0.93503 1.26222 0.96004 1.02489 0.96969 1.69827 1.50068 1.27704 1.10159 0.85309 0.80100 0.76481 0.79265 1.18072 1.20006 1.15049 1.21093 0.93750 0.95079 0.97369 1.21667 0.99118 0.92622 1.00947 0.91828 0.93091 0.93386 0.93664 0.91121 0.92685 0.91065 0.88847 0.90256 0.94139 0.74593 0.95222 0.89320 0.90955 0.88348 0.96269 0.92145 0.85870 0.85902 0.77386 0.91139 0.89594 0.97915 0.87629 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 8.87 71.98 0.64 -2.96 16 2 C -0.08 -1.58 2.15 -10.80 -0.02 -1.61 16 3 C -0.14 -1.81 8.84 71.98 0.64 -1.18 16 4 C -0.10 -1.62 2.32 -11.54 -0.03 -1.65 16 5 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 6 C -0.14 -1.75 8.74 71.98 0.63 -1.12 16 7 C 0.50 13.07 6.82 87.66 0.60 13.66 16 8 O -0.58 -22.29 13.28 -3.03 -0.04 -22.33 16 9 N -0.71 -14.78 4.80 -444.11 -2.13 -16.92 16 10 C 0.15 3.95 1.98 44.66 0.09 4.04 16 11 H 0.03 1.23 5.92 -2.39 -0.01 1.21 16 12 C -0.12 -2.88 5.47 31.27 0.17 -2.71 16 13 C -0.10 -2.43 5.41 30.16 0.16 -2.27 16 14 C 0.06 1.99 4.18 85.45 0.36 2.35 16 15 N -0.51 -14.71 4.11 -917.81 -3.77 -18.49 16 16 C 0.05 1.50 5.64 85.56 0.48 1.98 16 17 C 0.41 18.82 7.20 87.66 0.63 19.45 16 18 O -0.62 -34.77 11.89 -3.08 -0.04 -34.81 16 19 N -0.59 -28.29 5.09 -306.98 -1.56 -29.85 16 20 C -0.33 -19.89 10.16 84.04 0.85 -19.04 16 21 H 0.05 3.42 7.39 -2.91 -0.02 3.39 16 22 C -0.02 -1.06 5.50 84.93 0.47 -0.59 16 23 N -0.94 -58.22 13.96 21.67 0.30 -57.92 16 24 Si 0.97 39.49 27.74 68.60 1.90 41.39 16 25 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16 28 C 0.06 1.69 4.63 88.07 0.41 2.10 16 29 C -0.11 -2.24 5.21 30.35 0.16 -2.08 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.48 5.51 -2.39 -0.01 1.46 16 33 H 0.04 1.17 8.10 -2.39 -0.02 1.15 16 34 H 0.07 0.73 6.43 -2.39 -0.02 0.72 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.09 0.74 6.43 -2.39 -0.02 0.72 16 38 H 0.08 0.65 7.57 -2.39 -0.02 0.64 16 39 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.42 4.94 7.97 -92.72 -0.74 4.20 16 41 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 1.65 8.13 -2.39 -0.02 1.63 16 43 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.10 1.90 7.26 -2.39 -0.02 1.88 16 45 H 0.02 0.83 5.22 -2.38 -0.01 0.82 16 46 H 0.06 2.01 7.79 -2.39 -0.02 1.99 16 47 H 0.12 2.97 7.81 -2.39 -0.02 2.95 16 48 H 0.12 3.00 8.11 -2.39 -0.02 2.98 16 49 H 0.39 15.37 5.76 -92.71 -0.53 14.84 16 50 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 51 H 0.09 2.16 7.79 -2.39 -0.02 2.14 16 52 H 0.00 0.11 5.48 -2.39 -0.01 0.10 16 53 H 0.11 1.71 7.11 -2.39 -0.02 1.70 16 54 H 0.09 1.57 7.91 -2.39 -0.02 1.55 16 Total: -1.00 -88.42 401.81 0.47 -87.96 By element: Atomic # 1 Polarization: 43.00 SS G_CDS: -0.43 Total: 42.57 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.23 Total: 8.39 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -7.16 Total: -123.17 kcal Atomic # 8 Polarization: -57.06 SS G_CDS: -0.08 Total: -57.14 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.90 Total: 41.39 kcal Total: -88.42 0.47 -87.96 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327158293.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.451 kcal (2) G-P(sol) polarization free energy of solvation -88.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds