Wall clock time and date at job start Sat Apr 11 2020 05:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46914 * 2 1 4 4 C 1.53000 * 109.46815 * 240.00191 * 2 1 3 5 5 C 1.50707 * 109.46851 * 175.00383 * 4 2 1 6 6 O 1.21283 * 119.99795 * 359.97438 * 5 4 2 7 7 N 1.34768 * 119.99958 * 179.97438 * 5 4 2 8 8 C 1.46508 * 120.00091 * 179.71888 * 7 5 4 9 9 C 1.53001 * 109.47205 * 180.27352 * 8 7 5 10 10 H 1.09001 * 109.47066 * 64.99928 * 9 8 7 11 11 C 1.52993 * 109.47008 * 185.00184 * 9 8 7 12 12 N 1.46500 * 109.47040 * 305.00237 * 9 8 7 13 13 C 1.46502 * 119.99996 * 299.99959 * 12 9 8 14 14 C 1.36936 * 119.99932 * 120.00168 * 12 9 8 15 15 H 1.07994 * 120.00575 * 23.11608 * 14 12 9 16 16 C 1.38817 * 119.99688 * 203.11673 * 14 12 9 17 17 N 1.31617 * 120.00420 * 11.68886 * 16 14 12 18 18 Si 1.86801 * 119.99887 * 191.68590 * 16 14 12 19 19 H 1.48499 * 109.47440 * 90.00104 * 18 16 14 20 20 H 1.48493 * 109.47395 * 210.00270 * 18 16 14 21 21 H 1.48506 * 109.47322 * 330.00063 * 18 16 14 22 22 N 1.46491 * 109.47157 * 119.99796 * 2 1 3 23 23 C 1.34773 * 120.00375 * 274.99884 * 22 2 1 24 24 O 1.21290 * 120.00038 * 0.02562 * 23 22 2 25 25 C 1.50702 * 120.00795 * 179.97438 * 23 22 2 26 26 C 1.54269 * 110.02941 * 297.91445 * 25 23 22 27 27 C 1.54968 * 104.15753 * 217.13251 * 26 25 23 28 28 C 1.54893 * 102.77526 * 37.88465 * 27 26 25 29 29 C 1.53874 * 110.03784 * 180.69213 * 25 23 22 30 30 H 1.09003 * 109.47163 * 300.00454 * 1 2 3 31 31 H 1.09004 * 109.47518 * 60.00280 * 1 2 3 32 32 H 1.09003 * 109.47408 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47875 * 54.99644 * 4 2 1 34 34 H 1.09005 * 109.46811 * 294.98959 * 4 2 1 35 35 H 0.97003 * 120.00099 * 359.97438 * 7 5 4 36 36 H 1.08992 * 109.47003 * 300.27174 * 8 7 5 37 37 H 1.08999 * 109.46721 * 60.27400 * 8 7 5 38 38 H 1.09001 * 109.47416 * 59.99958 * 11 9 8 39 39 H 1.09004 * 109.47427 * 180.02562 * 11 9 8 40 40 H 1.09000 * 109.47149 * 299.99770 * 11 9 8 41 41 H 1.08997 * 109.47305 * 93.93991 * 13 12 9 42 42 H 1.09003 * 109.46734 * 213.94109 * 13 12 9 43 43 H 1.08999 * 109.46866 * 333.93355 * 13 12 9 44 44 H 0.96995 * 120.00004 * 179.97438 * 17 16 14 45 45 H 0.96999 * 120.00400 * 95.00033 * 22 2 1 46 46 H 1.09004 * 110.01296 * 59.29842 * 25 23 22 47 47 H 1.09000 * 110.48799 * 335.77550 * 26 25 23 48 48 H 1.08993 * 110.49041 * 98.42485 * 26 25 23 49 49 H 1.09003 * 110.71807 * 279.57499 * 27 26 25 50 50 H 1.08993 * 110.92452 * 156.29450 * 27 26 25 51 51 H 1.09002 * 110.48491 * 203.40608 * 28 27 26 52 52 H 1.08995 * 110.59836 * 80.82283 * 28 27 26 53 53 H 1.08998 * 110.03143 * 238.57111 * 29 25 23 54 54 H 1.09003 * 110.02751 * 359.97438 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 8 4.1449 -0.0205 -0.4445 7 7 4.2149 -1.1805 -2.3342 8 6 5.6745 -1.0720 -2.3992 9 6 6.1840 -1.7890 -3.6510 10 1 5.8168 -1.2748 -4.5392 11 6 7.7139 -1.7837 -3.6546 12 7 5.7004 -3.1719 -3.6525 13 6 6.0600 -4.0749 -2.5564 14 6 4.9123 -3.6205 -4.6786 15 1 4.9433 -3.1272 -5.6388 16 6 4.0735 -4.7094 -4.4845 17 7 3.8593 -5.1668 -3.2691 18 14 3.2487 -5.5257 -5.9484 19 1 4.1227 -6.6073 -6.4694 20 1 1.9470 -6.1016 -5.5255 21 1 3.0208 -4.5169 -7.0141 22 7 2.0183 -0.6905 1.1961 23 6 2.1471 -0.0182 2.3571 24 8 1.8582 1.1585 2.4117 25 6 2.6489 -0.7286 3.5878 26 6 1.6773 -1.8621 3.9766 27 6 1.6736 -1.8433 5.5262 28 6 1.7406 -0.3301 5.8504 29 6 2.6895 0.2449 4.7787 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.6053 -0.2618 -2.1370 34 1 1.7516 -1.7715 -1.2055 35 1 3.7326 -1.6563 -3.0285 36 1 5.9590 -0.0207 -2.4415 37 1 6.1127 -1.5317 -1.5134 38 1 8.0812 -2.2980 -2.7664 39 1 8.0770 -2.2942 -4.5466 40 1 8.0737 -0.7548 -3.6535 41 1 5.2754 -4.0586 -1.7999 42 1 6.1718 -5.0882 -2.9422 43 1 7.0005 -3.7497 -2.1115 44 1 3.2729 -5.9274 -3.1335 45 1 2.2490 -1.6317 1.1527 46 1 3.6432 -1.1358 3.4041 47 1 0.6787 -1.6579 3.5904 48 1 2.0417 -2.8205 3.6069 49 1 2.5477 -2.3618 5.9202 50 1 0.7564 -2.2822 5.9186 51 1 2.1508 -0.1716 6.8478 52 1 0.7530 0.1237 5.7686 53 1 3.7034 0.3095 5.1736 54 1 2.3467 1.2313 4.4664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329628696.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:50 Heat of formation + Delta-G solvation = -96.157543 kcal Electronic energy + Delta-G solvation = -31078.600313 eV Core-core repulsion = 27049.187012 eV Total energy + Delta-G solvation = -4029.413301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37126 -40.50059 -38.52924 -38.04373 -36.62023 -35.26435 -33.76232 -32.79105 -31.12419 -29.94013 -29.52327 -29.20071 -27.96946 -26.64673 -24.86669 -23.77030 -22.09105 -21.50811 -21.18670 -20.87834 -20.40289 -18.80800 -18.47941 -17.86797 -17.45439 -17.11189 -16.70141 -16.59762 -16.13540 -15.77257 -15.67887 -15.49275 -15.07100 -14.67187 -14.41889 -14.40792 -14.21667 -13.93058 -13.86966 -13.62808 -13.45865 -13.26868 -12.95945 -12.85005 -12.77511 -12.65821 -12.59407 -12.44276 -12.25148 -12.23372 -12.06182 -12.02156 -11.97557 -11.95485 -11.71829 -11.66378 -11.46220 -11.42281 -10.77862 -10.69815 -10.57064 -10.03040 -9.82772 -8.72795 -7.73899 -5.22710 1.51307 1.55959 1.60993 1.70832 1.78787 2.28615 2.43600 2.56144 3.39658 3.52625 3.65703 3.67620 3.68569 3.82005 3.89353 4.09694 4.21630 4.25479 4.39957 4.45629 4.47237 4.52392 4.55854 4.59076 4.63081 4.68378 4.69881 4.73849 4.79104 4.80367 4.86033 4.88677 4.96800 5.04899 5.08425 5.09574 5.22531 5.23055 5.27930 5.28630 5.32991 5.36665 5.45568 5.50249 5.60623 5.68013 5.75131 5.78390 6.39633 6.58042 6.77883 7.22560 7.30963 7.41009 7.92947 8.39268 9.27227 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012557 B = 0.002763 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.241495 B =10131.851808 C =10533.428218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.161 3.839 3 H 0.062 0.938 4 C -0.141 4.141 5 C 0.503 3.497 6 O -0.586 6.586 7 N -0.703 5.703 8 C 0.117 3.883 9 C 0.158 3.842 10 H 0.072 0.928 11 C -0.150 4.150 12 N -0.601 5.601 13 C 0.183 3.817 14 C -0.259 4.259 15 H 0.070 0.930 16 C -0.037 4.037 17 N -0.925 5.925 18 Si 0.957 3.043 19 H -0.298 1.298 20 H -0.297 1.297 21 H -0.270 1.270 22 N -0.706 5.706 23 C 0.521 3.479 24 O -0.587 6.587 25 C -0.114 4.114 26 C -0.111 4.111 27 C -0.118 4.118 28 C -0.120 4.120 29 C -0.121 4.121 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.130 0.870 34 H 0.111 0.889 35 H 0.411 0.589 36 H 0.062 0.938 37 H 0.038 0.962 38 H 0.047 0.953 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.004 0.996 42 H 0.013 0.987 43 H 0.018 0.982 44 H 0.246 0.754 45 H 0.404 0.596 46 H 0.099 0.901 47 H 0.064 0.936 48 H 0.085 0.915 49 H 0.079 0.921 50 H 0.081 0.919 51 H 0.080 0.920 52 H 0.059 0.941 53 H 0.072 0.928 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 6.008 10.652 13.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.056 3.944 3 H 0.080 0.920 4 C -0.181 4.181 5 C 0.290 3.710 6 O -0.467 6.467 7 N -0.353 5.353 8 C -0.009 4.009 9 C 0.050 3.950 10 H 0.090 0.910 11 C -0.210 4.210 12 N -0.324 5.324 13 C 0.038 3.962 14 C -0.389 4.389 15 H 0.088 0.912 16 C -0.234 4.234 17 N -0.571 5.571 18 Si 0.787 3.213 19 H -0.226 1.226 20 H -0.224 1.224 21 H -0.195 1.195 22 N -0.356 5.356 23 C 0.309 3.691 24 O -0.468 6.468 25 C -0.135 4.135 26 C -0.149 4.149 27 C -0.155 4.155 28 C -0.158 4.158 29 C -0.159 4.159 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.247 0.753 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.022 0.978 42 H 0.032 0.968 43 H 0.037 0.963 44 H 0.055 0.945 45 H 0.239 0.761 46 H 0.117 0.883 47 H 0.083 0.917 48 H 0.104 0.896 49 H 0.098 0.902 50 H 0.100 0.900 51 H 0.099 0.901 52 H 0.078 0.922 53 H 0.091 0.909 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.743 7.116 11.290 14.163 hybrid contribution -0.280 -1.305 -1.204 1.797 sum -5.022 5.811 10.086 12.678 Atomic orbital electron populations 1.22099 0.92977 1.03209 1.02771 1.20606 0.94598 0.96235 0.82989 0.91994 1.22014 0.90944 1.04567 1.00570 1.21054 0.91116 0.77943 0.80888 1.90670 1.71372 1.44836 1.39868 1.45933 1.08030 1.54711 1.26629 1.21759 0.80580 0.99255 0.99337 1.20802 0.94026 0.84819 0.95325 0.90990 1.22071 0.95474 1.01866 1.01549 1.44037 1.57684 1.06333 1.24341 1.20410 0.93947 0.92060 0.89798 1.19456 1.15488 1.12889 0.91039 0.91208 1.25551 0.98929 1.01109 0.97784 1.70206 1.39981 1.26950 1.19979 0.85434 0.77210 0.78564 0.80090 1.22607 1.22430 1.19504 1.45891 1.66437 1.14001 1.09227 1.20951 0.76118 0.86664 0.85414 1.90599 1.52705 1.17850 1.85648 1.22008 1.01440 0.97584 0.92516 1.22373 0.98120 0.96851 0.97531 1.22512 1.03055 0.95980 0.93996 1.22345 0.99038 0.95885 0.98482 1.22150 1.00861 0.98808 0.94034 0.93405 0.89705 0.90858 0.85221 0.87127 0.75322 0.92012 0.94335 0.93393 0.92802 0.90785 0.97751 0.96777 0.96335 0.94495 0.76057 0.88253 0.91684 0.89613 0.90237 0.90050 0.90139 0.92211 0.90877 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.48 71.98 0.68 -2.53 16 2 C 0.16 4.29 2.13 44.99 0.10 4.38 16 3 H 0.06 2.06 7.39 -2.39 -0.02 2.04 16 4 C -0.14 -3.57 5.24 29.85 0.16 -3.41 16 5 C 0.50 17.00 7.69 87.66 0.67 17.68 16 6 O -0.59 -23.67 15.35 -3.04 -0.05 -23.71 16 7 N -0.70 -24.59 5.39 -463.05 -2.49 -27.09 16 8 C 0.12 4.10 4.97 86.38 0.43 4.53 16 9 C 0.16 5.58 2.87 44.99 0.13 5.71 16 10 H 0.07 2.50 7.87 -2.39 -0.02 2.49 16 11 C -0.15 -4.54 9.18 71.98 0.66 -3.88 16 12 N -0.60 -26.14 2.29 -702.79 -1.61 -27.75 16 13 C 0.18 8.35 8.11 127.77 1.04 9.39 16 14 C -0.26 -12.35 9.32 84.03 0.78 -11.57 16 15 H 0.07 3.27 7.82 -2.91 -0.02 3.24 16 16 C -0.04 -1.85 5.12 84.86 0.43 -1.42 16 17 N -0.93 -48.44 10.65 21.65 0.23 -48.21 16 18 Si 0.96 41.03 29.57 68.60 2.03 43.06 16 19 H -0.30 -13.17 7.11 99.48 0.71 -12.46 16 20 H -0.30 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 22 N -0.71 -19.20 4.15 -442.54 -1.84 -21.04 16 23 C 0.52 15.68 6.97 87.66 0.61 16.29 16 24 O -0.59 -22.05 14.87 -3.06 -0.05 -22.09 16 25 C -0.11 -2.66 3.29 -10.81 -0.04 -2.70 16 26 C -0.11 -1.98 6.30 31.70 0.20 -1.78 16 27 C -0.12 -1.74 6.91 31.91 0.22 -1.52 16 28 C -0.12 -2.06 6.83 31.67 0.22 -1.84 16 29 C -0.12 -2.72 6.40 31.32 0.20 -2.52 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.11 2.65 8.14 -2.38 -0.02 2.63 16 35 H 0.41 15.07 7.89 -92.71 -0.73 14.34 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.04 1.48 7.84 -2.39 -0.02 1.46 16 38 H 0.05 1.48 6.66 -2.39 -0.02 1.46 16 39 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.00 0.21 7.41 -2.39 -0.02 0.19 16 42 H 0.01 0.69 7.23 -2.39 -0.02 0.67 16 43 H 0.02 0.75 6.43 -2.39 -0.02 0.73 16 44 H 0.25 12.77 8.31 -92.71 -0.77 12.00 16 45 H 0.40 9.91 8.59 -92.71 -0.80 9.12 16 46 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.06 1.22 7.85 -2.39 -0.02 1.20 16 48 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 54 H 0.06 1.76 6.39 -2.39 -0.02 1.74 16 Total: -1.00 -64.60 424.21 2.07 -62.53 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: -0.65 Total: 39.49 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: 6.49 Total: 24.81 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -5.71 Total: -124.08 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -0.09 Total: -45.81 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -64.60 2.07 -62.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329628696.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.630 kcal (2) G-P(sol) polarization free energy of solvation -64.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds