Wall clock time and date at job start Sat Apr 11 2020 05:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46876 * 2 1 4 4 C 1.52998 * 109.46860 * 239.99545 * 2 1 3 5 5 C 1.50707 * 109.46846 * 175.00311 * 4 2 1 6 6 O 1.21275 * 119.99817 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99787 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99698 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.47010 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.47040 * 295.00039 * 9 8 7 11 11 C 1.53000 * 109.47143 * 175.00027 * 9 8 7 12 12 N 1.46503 * 109.46946 * 55.00361 * 9 8 7 13 13 C 1.46493 * 120.00287 * 59.99968 * 12 9 8 14 14 C 1.36936 * 119.99555 * 239.72344 * 12 9 8 15 15 H 1.08003 * 120.00356 * 328.26816 * 14 12 9 16 16 C 1.38814 * 120.00078 * 148.27034 * 14 12 9 17 17 N 1.31618 * 120.00242 * 151.75159 * 16 14 12 18 18 Si 1.86803 * 119.99712 * 331.74983 * 16 14 12 19 19 H 1.48499 * 109.46789 * 95.27401 * 18 16 14 20 20 H 1.48496 * 109.47130 * 215.27036 * 18 16 14 21 21 H 1.48498 * 109.47399 * 335.27436 * 18 16 14 22 22 N 1.46497 * 109.46696 * 119.99870 * 2 1 3 23 23 C 1.34777 * 120.00025 * 274.99718 * 22 2 1 24 24 O 1.21272 * 120.00175 * 0.02562 * 23 22 2 25 25 C 1.50703 * 120.00137 * 180.02562 * 23 22 2 26 26 C 1.54270 * 110.03207 * 297.91006 * 25 23 22 27 27 C 1.54959 * 104.16038 * 217.13590 * 26 25 23 28 28 C 1.54892 * 102.77700 * 37.88486 * 27 26 25 29 29 C 1.53874 * 110.03437 * 180.68967 * 25 23 22 30 30 H 1.09003 * 109.46940 * 60.00342 * 1 2 3 31 31 H 1.08999 * 109.47318 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47337 * 300.00334 * 1 2 3 33 33 H 1.08994 * 109.47298 * 55.00738 * 4 2 1 34 34 H 1.08997 * 109.47495 * 295.00324 * 4 2 1 35 35 H 0.97004 * 120.00451 * 359.97438 * 7 5 4 36 36 H 1.09004 * 109.47257 * 60.00188 * 8 7 5 37 37 H 1.08997 * 109.47220 * 299.99996 * 8 7 5 38 38 H 1.09002 * 109.47378 * 180.02562 * 11 9 8 39 39 H 1.09007 * 109.47229 * 300.00225 * 11 9 8 40 40 H 1.08996 * 109.47168 * 59.99755 * 11 9 8 41 41 H 1.08999 * 109.47382 * 95.11047 * 13 12 9 42 42 H 1.09003 * 109.46711 * 215.11836 * 13 12 9 43 43 H 1.09002 * 109.46887 * 335.10872 * 13 12 9 44 44 H 0.96995 * 119.99793 * 180.02562 * 17 16 14 45 45 H 0.97005 * 119.99914 * 94.99884 * 22 2 1 46 46 H 1.09001 * 110.01895 * 59.29641 * 25 23 22 47 47 H 1.08998 * 110.48719 * 335.78422 * 26 25 23 48 48 H 1.09002 * 110.48736 * 98.42530 * 26 25 23 49 49 H 1.09007 * 110.72011 * 279.57573 * 27 26 25 50 50 H 1.08996 * 110.92770 * 156.29266 * 27 26 25 51 51 H 1.08998 * 110.48676 * 203.40561 * 28 27 26 52 52 H 1.08999 * 110.59794 * 80.82176 * 28 27 26 53 53 H 1.08994 * 110.03325 * 238.56582 * 29 25 23 54 54 H 1.08995 * 110.03168 * 0.02562 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5419 -0.6151 -1.3126 6 8 4.1450 -0.0213 -0.4440 7 7 4.2148 -1.1799 -2.3347 8 6 5.6748 -1.0761 -2.3966 9 6 6.1849 -1.7975 -3.6458 10 1 5.9749 -2.8637 -3.5607 11 6 7.6941 -1.5839 -3.7777 12 7 5.5103 -1.2598 -4.8299 13 6 5.6387 0.1606 -5.1643 14 6 4.7642 -2.0862 -5.6271 15 1 5.0412 -3.1243 -5.7380 16 6 3.6519 -1.5899 -6.2930 17 7 3.2675 -2.1337 -7.4282 18 14 2.7008 -0.1500 -5.5777 19 1 3.1831 1.1144 -6.1891 20 1 1.2542 -0.3196 -5.8674 21 1 2.9089 -0.1003 -4.1083 22 7 2.0182 -0.6906 1.1962 23 6 2.1470 -0.0182 2.3571 24 8 1.8582 1.1584 2.4117 25 6 2.6497 -0.7284 3.5875 26 6 1.6791 -1.8626 3.9767 27 6 1.6760 -1.8439 5.5262 28 6 1.7421 -0.3308 5.8506 29 6 2.6902 0.2450 4.7786 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6054 -0.2619 -2.1369 34 1 1.7516 -1.7716 -1.2055 35 1 3.7325 -1.6551 -3.0292 36 1 6.1098 -1.5356 -1.5090 37 1 5.9629 -0.0258 -2.4401 38 1 8.0574 -2.0975 -4.6678 39 1 7.9041 -0.5176 -3.8627 40 1 8.1961 -1.9838 -2.8967 41 1 6.4445 0.2925 -5.8864 42 1 4.7032 0.5186 -5.5942 43 1 5.8639 0.7276 -4.2611 44 1 2.4905 -1.7866 -7.8936 45 1 2.2489 -1.6318 1.1527 46 1 3.6443 -1.1349 3.4036 47 1 0.6803 -1.6591 3.5909 48 1 2.0440 -2.8208 3.6067 49 1 2.5506 -2.3619 5.9199 50 1 0.7592 -2.2834 5.9190 51 1 2.1526 -0.1720 6.8478 52 1 0.7541 0.1224 5.7693 53 1 3.7042 0.3103 5.1731 54 1 2.3458 1.2310 4.4668 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329628697.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:54 Heat of formation + Delta-G solvation = -89.580339 kcal Electronic energy + Delta-G solvation = -31139.067620 eV Core-core repulsion = 27109.939529 eV Total energy + Delta-G solvation = -4029.128092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41264 -40.58762 -38.69962 -38.08109 -36.66879 -35.31491 -33.96643 -32.87776 -31.88328 -29.95787 -29.51958 -29.26088 -28.05953 -26.69924 -25.06375 -23.79831 -22.13065 -21.51712 -21.33403 -20.93651 -20.42262 -18.93269 -18.50444 -17.95879 -17.52378 -17.40858 -16.92326 -16.64839 -16.39450 -15.82228 -15.70539 -15.43261 -15.28456 -14.73774 -14.45990 -14.41688 -14.29253 -14.20934 -14.04107 -13.87011 -13.67196 -13.52156 -13.45272 -12.96674 -12.91945 -12.68739 -12.64488 -12.45572 -12.25784 -12.22412 -12.04445 -12.02698 -12.00448 -11.94360 -11.68154 -11.64728 -11.42852 -11.41026 -10.84695 -10.70524 -10.56989 -10.05464 -9.87628 -8.87236 -8.17900 -5.46590 1.36850 1.44521 1.56841 1.68787 1.72853 2.25359 2.35168 2.47381 3.01268 3.37394 3.52495 3.62422 3.67434 3.80377 3.83927 4.02871 4.13962 4.24863 4.33032 4.40050 4.47059 4.51104 4.52676 4.53898 4.56178 4.58107 4.63057 4.68754 4.72961 4.76143 4.79307 4.81166 4.88091 4.98086 5.01148 5.01459 5.03348 5.08765 5.22376 5.24103 5.24683 5.27567 5.37285 5.41050 5.46170 5.57947 5.61481 5.93126 6.20559 6.58846 6.67809 6.96013 7.31603 7.32863 7.66232 8.07905 9.01439 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016638 B = 0.002777 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.505954 B =10080.900466 C =10962.850470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.161 3.839 3 H 0.055 0.945 4 C -0.151 4.151 5 C 0.504 3.496 6 O -0.578 6.578 7 N -0.711 5.711 8 C 0.112 3.888 9 C 0.158 3.842 10 H 0.076 0.924 11 C -0.150 4.150 12 N -0.608 5.608 13 C 0.114 3.886 14 C -0.255 4.255 15 H 0.049 0.951 16 C -0.016 4.016 17 N -0.942 5.942 18 Si 0.934 3.066 19 H -0.303 1.303 20 H -0.313 1.313 21 H -0.229 1.229 22 N -0.702 5.702 23 C 0.519 3.481 24 O -0.590 6.590 25 C -0.111 4.111 26 C -0.109 4.109 27 C -0.118 4.118 28 C -0.122 4.122 29 C -0.123 4.123 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.112 0.888 34 H 0.131 0.869 35 H 0.409 0.591 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.017 0.983 42 H 0.021 0.979 43 H 0.056 0.944 44 H 0.261 0.739 45 H 0.409 0.591 46 H 0.106 0.894 47 H 0.063 0.937 48 H 0.093 0.907 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.078 0.922 52 H 0.056 0.944 53 H 0.073 0.927 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.061 -2.276 22.999 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 H 0.074 0.926 4 C -0.191 4.191 5 C 0.291 3.709 6 O -0.459 6.459 7 N -0.363 5.363 8 C -0.014 4.014 9 C 0.051 3.949 10 H 0.094 0.906 11 C -0.209 4.209 12 N -0.332 5.332 13 C -0.031 4.031 14 C -0.385 4.385 15 H 0.067 0.933 16 C -0.214 4.214 17 N -0.586 5.586 18 Si 0.765 3.235 19 H -0.233 1.233 20 H -0.242 1.242 21 H -0.152 1.152 22 N -0.353 5.353 23 C 0.307 3.693 24 O -0.471 6.471 25 C -0.132 4.132 26 C -0.147 4.147 27 C -0.156 4.156 28 C -0.160 4.160 29 C -0.161 4.161 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.130 0.870 34 H 0.149 0.851 35 H 0.246 0.754 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.097 0.903 41 H 0.035 0.965 42 H 0.039 0.961 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.245 0.755 46 H 0.124 0.876 47 H 0.082 0.918 48 H 0.112 0.888 49 H 0.100 0.900 50 H 0.098 0.902 51 H 0.096 0.904 52 H 0.075 0.925 53 H 0.092 0.908 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.916 -1.053 23.496 23.700 hybrid contribution -0.529 0.490 -1.130 1.340 sum -3.445 -0.563 22.367 22.637 Atomic orbital electron populations 1.22112 0.93080 1.03605 1.02464 1.20531 0.94558 0.96180 0.83149 0.92634 1.22138 0.91277 1.05572 1.00074 1.20963 0.90889 0.78055 0.80975 1.90683 1.71155 1.43911 1.40127 1.46178 1.08356 1.55733 1.26017 1.21830 0.80238 1.00388 0.98961 1.20896 0.92563 0.97367 0.84034 0.90611 1.22057 0.95107 1.01703 1.02007 1.44155 1.57346 1.05185 1.26559 1.21261 0.98200 0.85262 0.98355 1.18652 1.04688 0.94012 1.21102 0.93297 1.25877 0.98601 1.00491 0.96383 1.70078 1.27480 1.46234 1.14770 0.86156 0.76483 0.78935 0.81945 1.23254 1.24244 1.15221 1.45789 1.66579 1.14088 1.08813 1.21038 0.76101 0.86658 0.85503 1.90617 1.52603 1.18200 1.85633 1.22003 1.01730 0.97458 0.92057 1.22379 0.98087 0.96999 0.97242 1.22512 1.03084 0.95641 0.94318 1.22355 0.98925 0.96233 0.98464 1.22160 1.00830 0.98835 0.94250 0.90627 0.90000 0.93323 0.87003 0.85135 0.75362 0.90762 0.93405 0.93231 0.93008 0.90338 0.96513 0.96071 0.92581 0.93027 0.75528 0.87601 0.91803 0.88828 0.90035 0.90177 0.90353 0.92509 0.90833 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.48 71.98 0.68 -2.39 16 2 C 0.16 3.99 2.13 44.99 0.10 4.09 16 3 H 0.06 1.83 7.39 -2.39 -0.02 1.81 16 4 C -0.15 -3.49 5.24 29.85 0.16 -3.34 16 5 C 0.50 15.39 7.69 87.66 0.67 16.06 16 6 O -0.58 -21.22 15.35 -3.01 -0.05 -21.27 16 7 N -0.71 -22.27 4.57 -463.05 -2.12 -24.39 16 8 C 0.11 3.43 4.93 86.38 0.43 3.85 16 9 C 0.16 5.16 2.87 44.99 0.13 5.29 16 10 H 0.08 2.52 7.89 -2.39 -0.02 2.50 16 11 C -0.15 -4.17 9.19 71.98 0.66 -3.51 16 12 N -0.61 -24.99 1.92 -702.77 -1.35 -26.34 16 13 C 0.11 4.56 8.78 127.77 1.12 5.68 16 14 C -0.26 -12.79 9.57 84.03 0.80 -11.98 16 15 H 0.05 2.72 8.06 -2.91 -0.02 2.70 16 16 C -0.02 -0.87 5.25 84.86 0.45 -0.42 16 17 N -0.94 -55.09 13.97 21.65 0.30 -54.79 16 18 Si 0.93 41.46 24.83 68.60 1.70 43.16 16 19 H -0.30 -14.10 6.60 99.48 0.66 -13.44 16 20 H -0.31 -14.29 7.11 99.48 0.71 -13.59 16 21 H -0.23 -8.76 5.28 99.48 0.53 -8.24 16 22 N -0.70 -15.93 4.15 -442.55 -1.84 -17.77 16 23 C 0.52 13.83 6.97 87.66 0.61 14.44 16 24 O -0.59 -21.03 14.87 -3.00 -0.04 -21.08 16 25 C -0.11 -2.12 3.29 -10.81 -0.04 -2.16 16 26 C -0.11 -1.43 6.30 31.69 0.20 -1.23 16 27 C -0.12 -1.32 6.91 31.91 0.22 -1.10 16 28 C -0.12 -1.81 6.83 31.67 0.22 -1.60 16 29 C -0.12 -2.45 6.40 31.32 0.20 -2.25 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 2.57 8.02 -2.39 -0.02 2.55 16 34 H 0.13 2.17 8.14 -2.39 -0.02 2.16 16 35 H 0.41 13.49 6.67 -92.71 -0.62 12.87 16 36 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.05 1.58 6.87 -2.39 -0.02 1.57 16 38 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.43 7.67 -2.38 -0.02 1.41 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.02 0.93 2.81 -2.39 -0.01 0.93 16 43 H 0.06 1.98 6.54 -2.39 -0.02 1.97 16 44 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.41 7.04 8.59 -92.70 -0.80 6.24 16 46 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.06 0.93 7.85 -2.39 -0.02 0.91 16 48 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 50 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 52 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 53 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 54 H 0.06 1.55 6.39 -2.39 -0.02 1.53 16 Total: -1.00 -70.97 415.69 2.46 -68.51 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: -0.76 Total: 34.52 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 6.61 Total: 19.45 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -5.00 Total: -123.29 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.09 Total: -42.35 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.70 Total: 43.16 kcal Total: -70.97 2.46 -68.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329628697.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.071 kcal (2) G-P(sol) polarization free energy of solvation -70.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds