Wall clock time and date at job start Sat Apr 11 2020 05:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47267 * 2 1 4 4 C 1.53003 * 109.47188 * 239.99865 * 2 1 3 5 5 N 1.46492 * 109.47445 * 185.00208 * 4 2 1 6 6 C 1.34780 * 120.00437 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99631 * 359.97438 * 6 5 4 8 8 C 1.50695 * 120.00473 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.47205 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.46887 * 304.99416 * 9 8 6 11 11 C 1.53004 * 109.46701 * 184.99637 * 9 8 6 12 12 N 1.46498 * 109.47187 * 64.99850 * 9 8 6 13 13 C 1.34780 * 119.99592 * 204.99870 * 12 9 8 14 14 O 1.21281 * 120.00074 * 0.02562 * 13 12 9 15 15 C 1.50699 * 119.99461 * 179.97438 * 13 12 9 16 16 C 1.55239 * 110.58318 * 294.87290 * 15 13 12 17 17 C 1.54887 * 102.58706 * 203.34435 * 16 15 13 18 18 C 1.54258 * 104.31759 * 37.93351 * 17 16 15 19 19 C 1.53879 * 106.59734 * 336.32441 * 18 17 16 20 20 N 1.46505 * 109.47152 * 120.00308 * 2 1 3 21 21 C 1.46507 * 119.99844 * 59.99621 * 20 2 1 22 22 C 1.36928 * 120.00228 * 239.99777 * 20 2 1 23 23 H 1.08007 * 119.99733 * 23.11982 * 22 20 2 24 24 C 1.38808 * 120.00482 * 203.11841 * 22 20 2 25 25 N 1.31621 * 119.99546 * 11.68980 * 24 22 20 26 26 Si 1.86803 * 120.00286 * 191.68626 * 24 22 20 27 27 H 1.48494 * 109.47029 * 90.00314 * 26 24 22 28 28 H 1.48502 * 109.47091 * 210.00070 * 26 24 22 29 29 H 1.48500 * 109.47137 * 330.00194 * 26 24 22 30 30 H 1.08990 * 109.46860 * 59.99791 * 1 2 3 31 31 H 1.08998 * 109.47267 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46971 * 299.99678 * 1 2 3 33 33 H 1.09002 * 109.46661 * 64.99794 * 4 2 1 34 34 H 1.09005 * 109.47225 * 305.00781 * 4 2 1 35 35 H 0.97008 * 120.00062 * 0.02562 * 5 4 2 36 36 H 1.08996 * 109.47285 * 59.99303 * 8 6 5 37 37 H 1.09003 * 109.46644 * 299.99574 * 8 6 5 38 38 H 1.09000 * 109.47297 * 60.00280 * 11 9 8 39 39 H 1.09005 * 109.46614 * 179.97438 * 11 9 8 40 40 H 1.09000 * 109.47270 * 299.99544 * 11 9 8 41 41 H 0.97001 * 120.00225 * 24.99889 * 12 9 8 42 42 H 1.08994 * 110.43859 * 57.46306 * 15 13 12 43 43 H 1.09002 * 110.89542 * 85.04949 * 16 15 13 44 44 H 1.08998 * 110.76521 * 321.57545 * 16 15 13 45 45 H 1.09003 * 110.48380 * 279.18634 * 17 16 15 46 46 H 1.09001 * 110.48621 * 156.67989 * 17 16 15 47 47 H 1.08994 * 110.03526 * 95.60704 * 18 17 16 48 48 H 1.09001 * 110.03637 * 216.99289 * 18 17 16 49 49 H 1.08995 * 110.03381 * 119.28779 * 19 18 17 50 50 H 1.09003 * 110.02985 * 240.66610 * 19 18 17 51 51 H 1.09002 * 109.46900 * 93.93893 * 21 20 2 52 52 H 1.08996 * 109.46963 * 213.93560 * 21 20 2 53 53 H 1.09001 * 109.47308 * 333.94126 * 21 20 2 54 54 H 0.97008 * 119.99387 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.1731 -1.4284 -2.1912 7 8 3.5700 -1.8834 -3.1400 8 6 5.6749 -1.5371 -2.1306 9 6 6.1849 -2.2583 -3.3799 10 1 5.6829 -3.2213 -3.4739 11 6 7.6942 -2.4794 -3.2607 12 7 5.9028 -1.4429 -4.5638 13 6 5.7819 -2.0281 -5.7719 14 8 5.9063 -3.2298 -5.8788 15 6 5.4912 -1.1894 -6.9897 16 6 4.0874 -0.5358 -6.8797 17 6 3.7245 -0.2643 -8.3608 18 6 4.2750 -1.4895 -9.1192 19 6 5.3983 -2.0778 -8.2475 20 7 2.0184 -0.6907 1.1962 21 6 1.6644 -2.0933 1.4279 22 6 2.8056 -0.0253 2.0975 23 1 2.7707 1.0528 2.1526 24 6 3.6486 -0.7363 2.9406 25 7 3.8672 -2.0164 2.7259 26 14 4.4729 0.1236 4.3796 27 1 3.6015 0.0283 5.5782 28 1 5.7776 -0.5265 4.6632 29 1 4.6948 1.5524 4.0413 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7516 -0.1583 -2.1369 34 1 1.6053 -1.7198 -1.2952 35 1 3.9824 -0.4629 -0.4316 36 1 5.9629 -2.1006 -1.2432 37 1 6.1098 -0.5387 -2.0840 38 1 7.9041 -3.0861 -2.3798 39 1 8.0574 -2.9936 -4.1506 40 1 8.1961 -1.5164 -3.1668 41 1 5.8029 -0.4818 -4.4783 42 1 6.2582 -0.4257 -7.1179 43 1 4.1356 0.3963 -6.3166 44 1 3.3745 -1.2252 -6.4274 45 1 4.2063 0.6489 -8.7103 46 1 2.6435 -0.1946 -8.4821 47 1 3.4855 -2.2278 -9.2591 48 1 4.6738 -1.1821 -10.0859 49 1 5.1539 -3.1016 -7.9643 50 1 6.3428 -2.0565 -8.7911 51 1 2.4507 -2.7366 1.0329 52 1 1.5553 -2.2684 2.4982 53 1 0.7238 -2.3186 0.9251 54 1 4.4560 -2.5133 3.3153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329628699.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:58 Heat of formation + Delta-G solvation = -97.248449 kcal Electronic energy + Delta-G solvation = -31061.882628 eV Core-core repulsion = 27032.422023 eV Total energy + Delta-G solvation = -4029.460606 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.32511 -40.46146 -38.53029 -38.07446 -36.62720 -35.26019 -33.75983 -32.77982 -31.13186 -29.92632 -29.54638 -29.19219 -27.99004 -26.64524 -24.87960 -23.83034 -22.08951 -21.34904 -21.19116 -20.89278 -20.46771 -18.81242 -18.45193 -17.87150 -17.42865 -17.02895 -16.81868 -16.58929 -16.14450 -15.84013 -15.65908 -15.30237 -15.03533 -14.66125 -14.45811 -14.39056 -14.28590 -13.97183 -13.87495 -13.62463 -13.37981 -13.26111 -12.98372 -12.84190 -12.83966 -12.76191 -12.59985 -12.44801 -12.25985 -12.17834 -12.07500 -12.05995 -11.97626 -11.96254 -11.72320 -11.69275 -11.46007 -11.29669 -10.76520 -10.70101 -10.58206 -10.02178 -9.81292 -8.74412 -7.74536 -5.24101 1.50991 1.55168 1.60993 1.72033 1.79225 2.29077 2.44990 2.55755 3.39235 3.54574 3.63069 3.66405 3.71485 3.82818 3.91194 4.10503 4.19436 4.26119 4.40262 4.45642 4.47273 4.53721 4.59977 4.60290 4.61358 4.63428 4.70902 4.73696 4.79162 4.79741 4.84769 4.89481 4.96042 5.05394 5.09126 5.09329 5.22283 5.25992 5.28282 5.28911 5.31475 5.37560 5.48240 5.50090 5.60306 5.67936 5.74702 5.76537 6.38482 6.62473 6.78917 7.20848 7.35625 7.42212 7.92003 8.38667 9.26822 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014729 B = 0.002742 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.556312 B =10210.012331 C =11418.727751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.158 3.842 3 H 0.076 0.924 4 C 0.117 3.883 5 N -0.703 5.703 6 C 0.503 3.497 7 O -0.583 6.583 8 C -0.140 4.140 9 C 0.162 3.838 10 H 0.051 0.949 11 C -0.152 4.152 12 N -0.701 5.701 13 C 0.518 3.482 14 O -0.593 6.593 15 C -0.108 4.108 16 C -0.109 4.109 17 C -0.118 4.118 18 C -0.122 4.122 19 C -0.114 4.114 20 N -0.601 5.601 21 C 0.182 3.818 22 C -0.257 4.257 23 H 0.074 0.926 24 C -0.042 4.042 25 N -0.929 5.929 26 Si 0.959 3.041 27 H -0.298 1.298 28 H -0.300 1.300 29 H -0.266 1.266 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.032 0.968 35 H 0.410 0.590 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.409 0.591 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.042 0.958 45 H 0.089 0.911 46 H 0.069 0.931 47 H 0.055 0.945 48 H 0.083 0.917 49 H 0.049 0.951 50 H 0.077 0.923 51 H 0.000 1.000 52 H 0.014 0.986 53 H 0.018 0.982 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 8.368 -17.990 20.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.051 3.949 3 H 0.094 0.906 4 C -0.009 4.009 5 N -0.353 5.353 6 C 0.290 3.710 7 O -0.464 6.464 8 C -0.180 4.180 9 C 0.057 3.943 10 H 0.069 0.931 11 C -0.211 4.211 12 N -0.352 5.352 13 C 0.306 3.694 14 O -0.474 6.474 15 C -0.129 4.129 16 C -0.147 4.147 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.152 4.152 20 N -0.325 5.325 21 C 0.037 3.963 22 C -0.387 4.387 23 H 0.092 0.908 24 C -0.237 4.237 25 N -0.576 5.576 26 Si 0.789 3.211 27 H -0.226 1.226 28 H -0.227 1.227 29 H -0.191 1.191 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.050 0.950 35 H 0.246 0.754 36 H 0.128 0.872 37 H 0.147 0.853 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.245 0.755 42 H 0.146 0.854 43 H 0.105 0.895 44 H 0.060 0.940 45 H 0.107 0.893 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.102 0.898 49 H 0.068 0.932 50 H 0.095 0.905 51 H 0.018 0.982 52 H 0.032 0.968 53 H 0.037 0.963 54 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.939 7.107 -18.602 20.300 hybrid contribution 0.413 0.003 1.809 1.855 sum 4.352 7.110 -16.794 18.749 Atomic orbital electron populations 1.22076 0.95521 1.01413 1.01987 1.20824 0.93955 0.95642 0.84498 0.90565 1.21759 0.80545 0.99559 0.99040 1.45931 1.07980 1.58383 1.23043 1.21026 0.91066 0.77098 0.81832 1.90674 1.71305 1.49391 1.35062 1.21992 0.91036 1.05197 0.99806 1.20515 0.96105 0.94234 0.83486 0.93115 1.22093 0.93415 1.03297 1.02258 1.45796 1.71668 1.11235 1.06454 1.21060 0.74517 0.88210 0.85610 1.90633 1.52753 1.17332 1.86649 1.22291 1.00571 0.98321 0.91754 1.22484 0.93567 1.00194 0.98447 1.22355 1.01343 0.98641 0.93156 1.22145 0.97273 0.97454 0.99117 1.22060 1.00055 0.98760 0.94322 1.44057 1.57723 1.09180 1.21503 1.20396 0.93856 0.85021 0.96998 1.19487 1.15155 0.91464 1.12554 0.90821 1.25618 0.99039 0.96642 1.02451 1.70241 1.39918 1.08543 1.38855 0.85390 0.77070 0.78478 0.80129 1.22622 1.22659 1.19053 0.90518 0.93709 0.92783 0.91389 0.94989 0.75370 0.87156 0.85330 0.90732 0.93368 0.89919 0.75549 0.85409 0.89490 0.93958 0.89252 0.91192 0.92655 0.89792 0.93244 0.90453 0.98195 0.96757 0.96330 0.94586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.54 9.18 71.98 0.66 -3.88 16 2 C 0.16 5.56 2.87 44.99 0.13 5.68 16 3 H 0.08 2.57 7.87 -2.39 -0.02 2.55 16 4 C 0.12 4.09 4.97 86.38 0.43 4.52 16 5 N -0.70 -24.52 5.39 -463.06 -2.49 -27.01 16 6 C 0.50 16.95 7.69 87.66 0.67 17.62 16 7 O -0.58 -23.37 15.35 -3.04 -0.05 -23.42 16 8 C -0.14 -3.57 5.24 29.85 0.16 -3.42 16 9 C 0.16 4.36 2.14 44.99 0.10 4.46 16 10 H 0.05 1.83 7.39 -2.39 -0.02 1.81 16 11 C -0.15 -3.29 9.48 71.98 0.68 -2.61 16 12 N -0.70 -17.08 4.21 -442.52 -1.86 -18.94 16 13 C 0.52 14.61 7.10 87.66 0.62 15.23 16 14 O -0.59 -22.29 15.09 -3.03 -0.05 -22.34 16 15 C -0.11 -2.16 3.25 -10.34 -0.03 -2.19 16 16 C -0.11 -2.08 6.34 32.01 0.20 -1.88 16 17 C -0.12 -1.71 6.82 31.67 0.22 -1.49 16 18 C -0.12 -1.97 6.80 31.32 0.21 -1.75 16 19 C -0.11 -2.35 6.18 31.32 0.19 -2.16 16 20 N -0.60 -26.58 2.29 -702.75 -1.61 -28.18 16 21 C 0.18 8.65 8.11 127.77 1.04 9.69 16 22 C -0.26 -12.33 9.32 84.03 0.78 -11.55 16 23 H 0.07 3.42 7.82 -2.91 -0.02 3.39 16 24 C -0.04 -2.09 5.12 84.86 0.43 -1.66 16 25 N -0.93 -50.37 10.65 21.65 0.23 -50.14 16 26 Si 0.96 41.50 29.57 68.60 2.03 43.52 16 27 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 28 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 29 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.41 6.66 -2.39 -0.02 1.39 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.03 1.27 7.84 -2.38 -0.02 1.25 16 35 H 0.41 15.03 7.89 -92.70 -0.73 14.30 16 36 H 0.11 2.89 8.14 -2.39 -0.02 2.88 16 37 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.41 7.60 8.60 -92.71 -0.80 6.80 16 42 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.04 1.11 8.06 -2.39 -0.02 1.09 16 45 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.05 1.37 6.85 -2.39 -0.02 1.35 16 50 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.00 -0.01 7.41 -2.39 -0.02 -0.03 16 52 H 0.01 0.72 7.23 -2.39 -0.02 0.70 16 53 H 0.02 0.78 6.43 -2.39 -0.02 0.77 16 54 H 0.24 13.20 8.31 -92.70 -0.77 12.43 16 Total: -1.00 -68.28 424.97 2.05 -66.23 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.65 Total: 35.66 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 6.50 Total: 24.62 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -5.73 Total: -124.27 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -0.09 Total: -45.76 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -68.28 2.05 -66.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329628699.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.022 kcal (2) G-P(sol) polarization free energy of solvation -68.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds