Wall clock time and date at job start Sat Apr 11 2020 05:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09005 * 109.46838 * 2 1 4 4 N 1.46490 * 109.47047 * 119.99742 * 2 1 3 5 5 C 1.36942 * 120.00431 * 274.99757 * 4 2 1 6 6 H 1.08003 * 119.99396 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00532 * 179.97438 * 5 4 2 8 8 N 1.31625 * 119.99611 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00323 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47205 * 59.99920 * 9 7 5 11 11 H 1.48498 * 109.47069 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46746 * 300.00138 * 9 7 5 13 13 C 1.52997 * 109.47109 * 239.99931 * 2 1 3 14 14 H 1.09005 * 109.55438 * 185.12459 * 13 2 1 15 15 C 1.53300 * 109.51386 * 64.99947 * 13 2 1 16 16 N 1.47148 * 108.41473 * 187.79338 * 15 13 2 17 17 C 1.34786 * 120.98067 * 230.53573 * 16 15 13 18 18 O 1.21277 * 119.99865 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99669 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.46582 * 180.02562 * 19 17 16 21 21 N 1.46902 * 109.46920 * 179.97438 * 20 19 17 22 22 C 1.46855 * 110.99747 * 294.20437 * 21 20 19 23 23 C 1.53039 * 109.51679 * 174.16148 * 22 21 20 24 24 C 1.53116 * 109.28153 * 59.18423 * 23 22 21 25 25 C 1.53117 * 109.15757 * 302.34104 * 24 23 22 26 26 C 1.46847 * 111.00021 * 170.00160 * 21 20 19 27 27 C 1.47148 * 118.03926 * 50.51693 * 16 15 13 28 28 C 1.53300 * 108.38206 * 309.46540 * 27 16 15 29 29 O 1.42955 * 109.22459 * 52.30018 * 28 27 16 30 30 H 1.08998 * 109.47159 * 60.00210 * 1 2 3 31 31 H 1.08995 * 109.46735 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46730 * 300.00314 * 1 2 3 33 33 H 0.97009 * 120.00016 * 95.00316 * 4 2 1 34 34 H 0.97005 * 119.99724 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.68260 * 68.04945 * 15 13 2 36 36 H 1.08999 * 109.68056 * 307.53378 * 15 13 2 37 37 H 1.09009 * 109.46789 * 299.99756 * 19 17 16 38 38 H 1.08993 * 109.47186 * 59.99831 * 19 17 16 39 39 H 1.08997 * 109.47060 * 299.99697 * 20 19 17 40 40 H 1.09004 * 109.47323 * 60.00150 * 20 19 17 41 41 H 1.08997 * 109.46599 * 294.17730 * 22 21 20 42 42 H 1.08997 * 109.45978 * 54.14836 * 22 21 20 43 43 H 1.08998 * 109.50517 * 299.23173 * 23 22 21 44 44 H 1.09003 * 109.52651 * 179.14458 * 23 22 21 45 45 H 1.09002 * 109.52279 * 182.43297 * 24 23 22 46 46 H 1.09001 * 109.52409 * 62.24588 * 24 23 22 47 47 H 1.09002 * 109.50429 * 297.71076 * 25 24 23 48 48 H 1.09004 * 109.53025 * 177.61646 * 25 24 23 49 49 H 1.09004 * 109.45852 * 305.85265 * 26 21 20 50 50 H 1.08997 * 109.46798 * 65.83041 * 26 21 20 51 51 H 1.09002 * 109.68553 * 69.18322 * 27 16 15 52 52 H 1.09004 * 109.68438 * 189.74263 * 27 16 15 53 53 H 1.09005 * 109.51071 * 172.22485 * 28 27 16 54 54 H 1.08997 * 109.51211 * 292.32088 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1961 5 6 2.1492 -0.0074 2.3757 6 1 1.8920 1.0405 2.4243 7 6 2.6114 -0.6618 3.5093 8 7 2.9244 -1.9389 3.4502 9 14 2.7892 0.2700 5.1185 10 1 1.4667 0.8068 5.5284 11 1 3.2982 -0.6484 6.1686 12 1 3.7445 1.3923 4.9376 13 6 2.0401 -0.7212 -1.2492 14 1 3.1262 -0.8022 -1.2059 15 6 1.6350 0.0697 -2.4984 16 7 1.9691 -0.7331 -3.6855 17 6 2.6760 -0.2044 -4.7041 18 8 3.0469 0.9490 -4.6504 19 6 3.0053 -1.0466 -5.9096 20 6 3.8088 -0.2131 -6.9098 21 7 4.1304 -1.0342 -8.0848 22 6 5.0386 -2.1314 -7.7273 23 6 5.2353 -3.0472 -8.9376 24 6 5.8182 -2.2345 -10.0970 25 6 4.8772 -1.0699 -10.4174 26 6 4.6908 -0.2114 -9.1643 27 6 1.5092 -2.1302 -3.7275 28 6 1.9211 -2.8144 -2.4189 29 8 1.4666 -2.0293 -1.3140 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.2470 -2.3963 4.2424 35 1 2.1798 1.0133 -2.5281 36 1 0.5629 0.2653 -2.4774 37 1 3.5949 -1.9096 -5.5998 38 1 2.0820 -1.3868 -6.3784 39 1 3.2196 0.6500 -7.2196 40 1 4.7322 0.1267 -6.4407 41 1 6.0011 -1.7213 -7.4218 42 1 4.6103 -2.7039 -6.9045 43 1 4.2751 -3.4686 -9.2350 44 1 5.9213 -3.8531 -8.6769 45 1 5.9197 -2.8730 -10.9746 46 1 6.7962 -1.8453 -9.8136 47 1 3.9114 -1.4601 -10.7383 48 1 5.3071 -0.4626 -11.2140 49 1 4.0100 0.6106 -9.3852 50 1 5.6551 0.1895 -8.8522 51 1 0.4243 -2.1567 -3.8298 52 1 1.9707 -2.6435 -4.5712 53 1 1.4721 -3.8065 -2.3698 54 1 3.0067 -2.9039 -2.3809 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330444755.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:53:23 Heat of formation + Delta-G solvation = -91.309738 kcal Electronic energy + Delta-G solvation = -30494.798529 eV Core-core repulsion = 26465.595445 eV Total energy + Delta-G solvation = -4029.203084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.54326 -40.11023 -39.43735 -37.12306 -35.74203 -35.22685 -34.32677 -32.21106 -31.78857 -31.10646 -29.95879 -28.45854 -26.59334 -25.77306 -24.81282 -24.01629 -23.72909 -22.51479 -21.17323 -20.60758 -20.04880 -19.29652 -18.47344 -17.64637 -17.08548 -16.96476 -16.77999 -16.52169 -16.09937 -16.00688 -15.78749 -15.39331 -15.29779 -15.16577 -15.02098 -14.61774 -14.43006 -14.32640 -14.01512 -13.85487 -13.72527 -13.52425 -13.29865 -13.07374 -12.97608 -12.80573 -12.62618 -12.44035 -12.38780 -12.22459 -12.13647 -12.11052 -11.83714 -11.64384 -11.57512 -11.56137 -11.27251 -11.18260 -11.15776 -10.92740 -10.82759 -9.59414 -9.35775 -9.00885 -7.92376 -5.21079 1.46734 1.50051 1.52380 1.55958 1.78452 2.56528 2.79098 2.85397 3.40941 3.53499 3.62388 3.78026 3.90416 3.92260 3.97916 3.99538 4.02768 4.08378 4.13412 4.19015 4.33527 4.34044 4.38572 4.44133 4.48488 4.53577 4.61273 4.64237 4.64404 4.68151 4.78583 4.82236 4.84495 4.87404 4.95383 4.96085 4.98090 5.08599 5.09532 5.10809 5.23909 5.26121 5.30346 5.31257 5.50001 5.51054 5.61881 6.03844 6.11523 6.26069 6.28537 6.31682 7.05126 7.35304 8.10955 8.35976 9.30851 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021839 B = 0.001976 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.789130 B =14163.479644 C =14286.447278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.175 3.825 3 H 0.056 0.944 4 N -0.732 5.732 5 C -0.241 4.241 6 H 0.076 0.924 7 C -0.078 4.078 8 N -0.969 5.969 9 Si 0.973 3.027 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.279 1.279 13 C 0.092 3.908 14 H 0.037 0.963 15 C 0.092 3.908 16 N -0.615 5.615 17 C 0.512 3.488 18 O -0.586 6.586 19 C -0.122 4.122 20 C 0.076 3.924 21 N -0.536 5.536 22 C 0.045 3.955 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.112 4.112 26 C 0.052 3.948 27 C 0.076 3.924 28 C 0.036 3.964 29 O -0.383 6.383 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.036 0.964 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.072 0.928 40 H 0.021 0.979 41 H 0.022 0.978 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.053 0.947 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.075 0.925 50 H 0.024 0.976 51 H 0.094 0.906 52 H 0.129 0.871 53 H 0.129 0.871 54 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 -3.726 -30.878 31.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.066 3.934 3 H 0.074 0.926 4 N -0.372 5.372 5 C -0.372 4.372 6 H 0.094 0.906 7 C -0.270 4.270 8 N -0.619 5.619 9 Si 0.802 3.198 10 H -0.204 1.204 11 H -0.222 1.222 12 H -0.205 1.205 13 C 0.033 3.967 14 H 0.055 0.945 15 C -0.032 4.032 16 N -0.348 5.348 17 C 0.302 3.698 18 O -0.467 6.467 19 C -0.162 4.162 20 C -0.052 4.052 21 N -0.261 5.261 22 C -0.083 4.083 23 C -0.151 4.151 24 C -0.161 4.161 25 C -0.150 4.150 26 C -0.076 4.076 27 C -0.046 4.046 28 C -0.041 4.041 29 O -0.301 6.301 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.207 0.793 34 H 0.059 0.941 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.041 0.959 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.072 0.928 47 H 0.090 0.910 48 H 0.094 0.906 49 H 0.093 0.907 50 H 0.043 0.957 51 H 0.112 0.888 52 H 0.147 0.853 53 H 0.147 0.853 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.088 -3.254 -30.784 30.955 hybrid contribution 1.329 0.659 1.606 2.187 sum 1.417 -2.594 -29.177 29.327 Atomic orbital electron populations 1.22203 0.96826 1.01216 1.00440 1.20432 0.93955 0.94432 0.84581 0.92609 1.42511 1.78324 1.10445 1.05944 1.19613 1.35059 0.94207 0.88368 0.90610 1.25565 1.03020 0.96929 1.01456 1.69838 1.52546 1.10189 1.29371 0.85217 0.77952 0.77261 0.79359 1.20379 1.22203 1.20524 1.22524 0.95785 0.83949 0.94457 0.94478 1.22188 1.02178 0.95076 0.83717 1.48304 1.54473 1.13930 1.18101 1.21314 0.76266 0.87617 0.84582 1.90686 1.54622 1.20296 1.81086 1.21628 1.04038 0.98731 0.91813 1.21666 0.98134 0.95326 0.90114 1.61974 1.44686 1.11642 1.07782 1.22278 0.93942 0.93069 0.98969 1.21576 1.01874 0.97410 0.94280 1.21607 0.98285 0.97351 0.98890 1.21565 1.00497 0.96885 0.96048 1.22145 0.97637 0.95861 0.91978 1.22716 1.02120 0.79876 0.99852 1.23236 0.99495 0.95977 0.85419 1.88051 1.67776 1.25727 1.48587 0.91171 0.93399 0.94500 0.79270 0.94128 0.89777 0.89035 0.86940 0.85532 0.90980 0.96093 0.95949 0.89588 0.90815 0.90611 0.90729 0.92812 0.91028 0.90629 0.90666 0.95748 0.88752 0.85310 0.85281 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 9.06 71.98 0.65 -4.70 16 2 C 0.17 7.13 2.77 44.99 0.12 7.26 16 3 H 0.06 2.29 8.08 -2.38 -0.02 2.27 16 4 N -0.73 -38.22 5.10 -322.95 -1.65 -39.87 16 5 C -0.24 -13.68 9.93 84.03 0.83 -12.85 16 6 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 7 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 8 N -0.97 -60.57 13.06 21.65 0.28 -60.29 16 9 Si 0.97 47.08 29.55 68.60 2.03 49.11 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 C 0.09 3.19 2.61 30.69 0.08 3.27 16 14 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 15 C 0.09 2.63 5.82 86.36 0.50 3.13 16 16 N -0.61 -14.30 3.02 -817.33 -2.47 -16.77 16 17 C 0.51 12.44 7.71 87.66 0.68 13.11 16 18 O -0.59 -19.46 15.45 -3.02 -0.05 -19.51 16 19 C -0.12 -1.88 4.00 29.85 0.12 -1.76 16 20 C 0.08 1.39 4.25 86.30 0.37 1.75 16 21 N -0.54 -8.02 4.66 -896.34 -4.17 -12.19 16 22 C 0.05 0.58 5.29 86.32 0.46 1.04 16 23 C -0.11 -1.15 6.09 30.65 0.19 -0.97 16 24 C -0.12 -1.23 6.00 30.67 0.18 -1.05 16 25 C -0.11 -1.19 6.09 30.65 0.19 -1.01 16 26 C 0.05 0.73 5.46 86.33 0.47 1.20 16 27 C 0.08 1.21 6.54 86.36 0.56 1.77 16 28 C 0.04 0.78 6.99 72.08 0.50 1.28 16 29 O -0.38 -12.56 9.25 -148.98 -1.38 -13.93 16 30 H 0.07 2.04 6.42 -2.39 -0.02 2.02 16 31 H 0.05 1.83 7.56 -2.39 -0.02 1.81 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.38 21.33 7.59 -92.70 -0.70 20.62 16 34 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 35 H 0.08 2.67 7.08 -2.39 -0.02 2.65 16 36 H 0.09 2.40 6.27 -2.39 -0.01 2.38 16 37 H 0.11 1.32 5.94 -2.38 -0.01 1.31 16 38 H 0.13 1.40 8.02 -2.39 -0.02 1.38 16 39 H 0.07 1.47 7.95 -2.39 -0.02 1.45 16 40 H 0.02 0.47 8.08 -2.39 -0.02 0.45 16 41 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.09 0.94 6.21 -2.39 -0.01 0.92 16 43 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 46 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 47 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.07 1.05 8.02 -2.38 -0.02 1.03 16 50 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 51 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.13 1.09 6.05 -2.38 -0.01 1.08 16 53 H 0.13 2.14 8.14 -2.38 -0.02 2.12 16 54 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -73.68 410.78 -0.86 -74.54 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: 0.17 Total: 31.50 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 6.38 Total: 7.40 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -8.01 Total: -129.11 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -1.42 Total: -33.44 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -73.68 -0.86 -74.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330444755.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.765 kcal (2) G-P(sol) polarization free energy of solvation -73.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds