Wall clock time and date at job start Sat Apr 11 2020 05:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47187 * 2 1 4 4 N 1.46499 * 109.46841 * 240.00170 * 2 1 3 5 5 C 1.34776 * 120.00209 * 85.00049 * 4 2 1 6 6 O 1.21274 * 119.99710 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99959 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47232 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47216 * 179.97438 * 8 7 5 10 10 C 1.50699 * 109.47087 * 180.02562 * 9 8 7 11 11 O 1.21288 * 119.99838 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99933 * 179.72554 * 10 9 8 13 13 C 1.46499 * 119.99898 * 180.27215 * 12 10 9 14 14 C 1.46491 * 120.00099 * 0.27835 * 12 10 9 15 15 C 1.52998 * 109.47506 * 119.99767 * 2 1 3 16 16 H 1.09001 * 109.49477 * 59.93432 * 15 2 1 17 17 C 1.53045 * 109.49900 * 299.83993 * 15 2 1 18 18 C 1.53037 * 109.53842 * 178.67776 * 17 15 2 19 19 C 1.53192 * 109.31118 * 61.36738 * 18 17 15 20 20 N 1.46927 * 108.77563 * 305.36249 * 19 18 17 21 21 C 1.36936 * 120.63107 * 233.59107 * 20 19 18 22 22 H 1.08001 * 120.00354 * 151.84848 * 21 20 19 23 23 C 1.38813 * 119.99746 * 331.83823 * 21 20 19 24 24 N 1.31614 * 119.99976 * 343.07425 * 23 21 20 25 25 Si 1.86803 * 119.99565 * 163.07168 * 23 21 20 26 26 H 1.48504 * 109.47028 * 90.00541 * 25 23 21 27 27 H 1.48499 * 109.47032 * 210.00205 * 25 23 21 28 28 H 1.48497 * 109.47453 * 330.00213 * 25 23 21 29 29 C 1.46927 * 118.73725 * 53.60744 * 20 19 18 30 30 H 1.08996 * 109.46853 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46989 * 299.99841 * 1 2 3 32 32 H 1.08993 * 109.47421 * 59.99784 * 1 2 3 33 33 H 0.96998 * 119.99909 * 264.99325 * 4 2 1 34 34 H 1.09000 * 109.47181 * 59.99870 * 7 5 4 35 35 H 1.09002 * 109.47067 * 299.99789 * 7 5 4 36 36 H 1.09000 * 109.46867 * 60.00016 * 8 7 5 37 37 H 1.08993 * 109.47280 * 300.00244 * 8 7 5 38 38 H 1.09000 * 109.46922 * 60.00377 * 9 8 7 39 39 H 1.09002 * 109.47343 * 300.00286 * 9 8 7 40 40 H 1.09005 * 109.47005 * 90.00146 * 13 12 10 41 41 H 1.08998 * 109.47468 * 210.00332 * 13 12 10 42 42 H 1.09003 * 109.47550 * 330.01028 * 13 12 10 43 43 H 1.09005 * 109.47106 * 89.99814 * 14 12 10 44 44 H 1.08991 * 109.47290 * 209.99743 * 14 12 10 45 45 H 1.09004 * 109.47517 * 329.99805 * 14 12 10 46 46 H 1.09002 * 109.45857 * 298.70353 * 17 15 2 47 47 H 1.09006 * 109.45924 * 58.65814 * 17 15 2 48 48 H 1.09000 * 109.50000 * 301.41698 * 18 17 15 49 49 H 1.09001 * 109.52486 * 181.32803 * 18 17 15 50 50 H 1.09000 * 109.59089 * 185.57496 * 19 18 17 51 51 H 1.09000 * 109.58840 * 65.14578 * 19 18 17 52 52 H 0.97009 * 119.99447 * 179.97438 * 24 23 21 53 53 H 1.09006 * 109.58546 * 186.60316 * 29 20 19 54 54 H 1.08999 * 109.58577 * 66.18352 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8582 1.1583 -2.4117 7 6 2.6498 -0.7285 -3.5875 8 6 2.7006 0.2544 -4.7589 9 6 3.2117 -0.4666 -6.0079 10 6 3.2623 0.5017 -7.1615 11 8 2.9234 1.6551 -7.0004 12 7 3.6899 0.0875 -8.3707 13 6 3.7447 1.0303 -9.4907 14 6 4.0996 -1.3054 -8.5651 15 6 2.0401 -0.7212 1.2492 16 1 1.6761 -1.7486 1.2503 17 6 1.5337 0.0022 2.4993 18 6 2.0160 -0.7374 3.7492 19 6 3.5477 -0.7379 3.7782 20 7 4.0443 -1.3004 2.5150 21 6 4.9308 -2.3441 2.5168 22 1 4.9520 -3.0361 1.6879 23 6 5.8024 -2.5125 3.5839 24 7 6.0202 -1.5187 4.4189 25 14 6.6661 -4.1497 3.8349 26 1 7.9580 -4.1453 3.1025 27 1 6.9189 -4.3591 5.2831 28 1 5.8082 -5.2463 3.3186 29 6 3.5720 -0.7215 1.2498 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 2.2491 -1.6317 -1.1526 34 1 1.9776 -1.5508 -3.8325 35 1 3.6492 -1.1203 -3.3979 36 1 3.3726 1.0769 -4.5141 37 1 1.7012 0.6458 -4.9483 38 1 2.5400 -1.2894 -6.2528 39 1 4.2113 -0.8578 -5.8182 40 1 4.7222 1.5120 -9.5125 41 1 3.5831 0.4937 -10.4256 42 1 2.9697 1.7867 -9.3672 43 1 3.2373 -1.8988 -8.8692 44 1 4.8654 -1.3543 -9.3391 45 1 4.5010 -1.6999 -7.6315 46 1 1.9183 1.0220 2.5095 47 1 0.4439 0.0254 2.4889 48 1 1.6522 -1.7647 3.7273 49 1 1.6356 -0.2356 4.6389 50 1 3.8973 -1.3469 4.6118 51 1 3.9113 0.2834 3.8913 52 1 6.6291 -1.6366 5.1648 53 1 3.9376 -1.3198 0.4152 54 1 3.9377 0.3011 1.1569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480388494.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:54:06 Heat of formation + Delta-G solvation = -95.619303 kcal Electronic energy + Delta-G solvation = -29937.123589 eV Core-core repulsion = 25907.733629 eV Total energy + Delta-G solvation = -4029.389961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.12124 -40.75325 -39.40738 -36.75656 -36.55000 -35.23899 -34.64720 -32.62465 -32.14349 -30.39540 -29.74632 -28.40744 -27.14105 -26.72149 -24.95933 -23.61959 -23.30064 -21.78015 -21.34265 -20.52836 -20.14242 -18.68139 -18.11673 -17.75927 -17.30620 -17.01628 -16.86776 -16.66020 -16.39341 -15.87316 -15.52468 -15.11758 -14.97238 -14.89180 -14.66458 -14.29287 -14.17334 -14.05355 -13.93885 -13.72987 -13.45131 -13.40406 -13.26024 -13.14241 -12.99075 -12.80487 -12.75948 -12.69032 -12.53366 -12.32109 -12.24255 -12.20550 -11.95748 -11.75341 -11.70131 -11.49659 -11.25103 -11.08074 -10.94367 -10.66801 -10.51656 -9.97385 -9.67686 -8.65836 -7.84754 -5.31127 1.48289 1.50055 1.59611 1.61880 1.76661 2.05222 2.37045 2.52848 3.30043 3.56945 3.59206 3.79731 3.95582 4.03676 4.07422 4.08567 4.09354 4.30951 4.36018 4.38750 4.47065 4.49512 4.51644 4.60408 4.64664 4.66962 4.69391 4.78019 4.80090 4.82895 4.87681 4.89693 4.91284 4.97431 5.01314 5.07621 5.12871 5.18397 5.26760 5.28005 5.36004 5.39147 5.48519 5.53562 5.56730 5.65314 5.70067 5.79004 6.35761 6.40582 6.68911 7.16327 7.17513 7.39323 7.87773 8.40929 9.21647 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.002176 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.713854 B =12862.565025 C =14596.299295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 H 0.055 0.945 4 N -0.714 5.714 5 C 0.504 3.496 6 O -0.593 6.593 7 C -0.130 4.130 8 C -0.085 4.085 9 C -0.128 4.128 10 C 0.497 3.503 11 O -0.596 6.596 12 N -0.626 5.626 13 C 0.079 3.921 14 C 0.069 3.931 15 C -0.092 4.092 16 H 0.082 0.918 17 C -0.099 4.099 18 C -0.129 4.129 19 C 0.173 3.827 20 N -0.608 5.608 21 C -0.258 4.258 22 H 0.073 0.927 23 C -0.057 4.057 24 N -0.939 5.939 25 Si 0.969 3.031 26 H -0.286 1.286 27 H -0.297 1.297 28 H -0.265 1.265 29 C 0.155 3.845 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.413 0.587 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.039 0.961 37 H 0.047 0.953 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.054 0.946 41 H 0.099 0.901 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.086 0.914 48 H 0.058 0.942 49 H 0.067 0.933 50 H 0.052 0.948 51 H -0.014 1.014 52 H 0.248 0.752 53 H 0.059 0.941 54 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.950 -5.890 -24.072 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.048 3.952 3 H 0.073 0.927 4 N -0.366 5.366 5 C 0.292 3.708 6 O -0.474 6.474 7 C -0.170 4.170 8 C -0.123 4.123 9 C -0.167 4.167 10 C 0.287 3.713 11 O -0.477 6.477 12 N -0.360 5.360 13 C -0.063 4.063 14 C -0.073 4.073 15 C -0.112 4.112 16 H 0.101 0.899 17 C -0.137 4.137 18 C -0.168 4.168 19 C 0.047 3.953 20 N -0.331 5.331 21 C -0.388 4.388 22 H 0.091 0.909 23 C -0.251 4.251 24 N -0.585 5.585 25 Si 0.797 3.203 26 H -0.213 1.213 27 H -0.223 1.223 28 H -0.189 1.189 29 C 0.030 3.970 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.250 0.750 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.070 0.930 43 H 0.092 0.908 44 H 0.106 0.894 45 H 0.110 0.890 46 H 0.063 0.937 47 H 0.104 0.896 48 H 0.076 0.924 49 H 0.086 0.914 50 H 0.071 0.929 51 H 0.004 0.996 52 H 0.057 0.943 53 H 0.078 0.922 54 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges -9.203 -4.492 -23.927 26.027 hybrid contribution 1.085 -0.301 0.606 1.279 sum -8.118 -4.793 -23.321 25.154 Atomic orbital electron populations 1.22108 0.93893 1.02902 1.02078 1.20803 0.94735 0.95894 0.83749 0.92653 1.46071 1.66724 1.14691 1.09089 1.21416 0.76586 0.86952 0.85802 1.90696 1.52296 1.18503 1.85912 1.21712 1.05345 0.99531 0.90364 1.20936 1.01268 0.97172 0.92968 1.21729 1.06044 0.98056 0.90867 1.21475 0.75816 0.88878 0.85124 1.90714 1.50651 1.22061 1.84235 1.48008 1.65039 1.13103 1.09800 1.21710 1.01677 0.93654 0.89281 1.22146 1.01485 0.79075 1.04585 1.21726 0.96042 0.99997 0.93483 0.89925 1.21452 1.00825 0.98005 0.93441 1.22000 0.96649 1.00253 0.97938 1.20625 0.90958 0.94552 0.89154 1.44326 1.50010 1.37860 1.00943 1.19550 1.10811 1.02479 1.06005 0.90900 1.25874 0.98571 1.00610 1.00088 1.70219 1.38805 1.31375 1.18133 0.85258 0.78432 0.80233 0.76405 1.21269 1.22340 1.18931 1.20965 0.92820 0.94671 0.88565 0.90878 0.90583 0.93665 0.74985 0.85055 0.86204 0.94170 0.93361 0.85282 0.85802 0.92708 0.88253 0.93027 0.90842 0.89409 0.89042 0.93657 0.89574 0.92355 0.91431 0.92946 0.99582 0.94292 0.92243 0.99117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.14 71.98 0.66 -2.87 16 2 C 0.15 4.27 2.16 44.99 0.10 4.37 16 3 H 0.06 1.89 7.58 -2.39 -0.02 1.88 16 4 N -0.71 -17.03 4.48 -442.54 -1.98 -19.01 16 5 C 0.50 13.27 7.79 87.66 0.68 13.95 16 6 O -0.59 -21.86 15.64 -3.01 -0.05 -21.90 16 7 C -0.13 -2.08 5.70 29.85 0.17 -1.91 16 8 C -0.08 -1.79 3.79 30.59 0.12 -1.68 16 9 C -0.13 -1.62 4.25 29.85 0.13 -1.50 16 10 C 0.50 10.21 7.67 87.66 0.67 10.88 16 11 O -0.60 -19.12 15.56 -3.06 -0.05 -19.17 16 12 N -0.63 -8.58 3.27 -871.90 -2.85 -11.43 16 13 C 0.08 1.02 10.44 127.77 1.33 2.35 16 14 C 0.07 0.27 10.25 127.77 1.31 1.58 16 15 C -0.09 -2.85 1.97 -10.72 -0.02 -2.87 16 16 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 17 C -0.10 -3.09 4.86 30.62 0.15 -2.94 16 18 C -0.13 -4.71 6.08 30.67 0.19 -4.52 16 19 C 0.17 8.41 5.30 86.36 0.46 8.86 16 20 N -0.61 -30.10 2.99 -699.10 -2.09 -32.20 16 21 C -0.26 -13.81 9.58 84.03 0.81 -13.01 16 22 H 0.07 3.68 7.88 -2.91 -0.02 3.66 16 23 C -0.06 -3.13 4.92 84.86 0.42 -2.71 16 24 N -0.94 -55.98 11.20 21.65 0.24 -55.74 16 25 Si 0.97 43.91 29.59 68.60 2.03 45.94 16 26 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 28 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 29 C 0.16 6.30 5.55 86.36 0.48 6.78 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.08 1.63 6.41 -2.39 -0.02 1.62 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.41 7.66 8.42 -92.71 -0.78 6.88 16 34 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.04 1.14 8.06 -2.39 -0.02 1.12 16 37 H 0.05 1.28 8.06 -2.39 -0.02 1.26 16 38 H 0.13 0.76 8.11 -2.39 -0.02 0.74 16 39 H 0.12 0.91 7.40 -2.39 -0.02 0.89 16 40 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.10 0.62 8.07 -2.39 -0.02 0.60 16 42 H 0.05 0.93 7.42 -2.39 -0.02 0.91 16 43 H 0.07 0.12 8.14 -2.38 -0.02 0.10 16 44 H 0.09 0.12 8.07 -2.39 -0.02 0.10 16 45 H 0.09 0.11 6.43 -2.38 -0.02 0.10 16 46 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.09 2.14 6.37 -2.38 -0.02 2.12 16 48 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 50 H 0.05 2.88 6.06 -2.39 -0.01 2.87 16 51 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 52 H 0.25 14.36 8.31 -92.70 -0.77 13.58 16 53 H 0.06 2.26 7.44 -2.38 -0.02 2.24 16 54 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 Total: -1.00 -83.92 421.29 2.98 -80.94 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.09 Total: 17.79 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 7.64 Total: 14.77 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -6.68 Total: -118.38 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.09 Total: -41.07 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -83.92 2.98 -80.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480388494.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.675 kcal (2) G-P(sol) polarization free energy of solvation -83.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds