Wall clock time and date at job start Sat Apr 11 2020 05:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46899 * 109.47254 * 179.97438 * 5 4 2 7 7 C 1.46904 * 111.00029 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46800 * 180.02562 * 7 6 5 9 9 O 1.21289 * 120.00338 * 0.02562 * 8 7 6 10 10 N 1.34782 * 119.99855 * 180.02562 * 8 7 6 11 11 C 1.37091 * 120.00193 * 180.02562 * 10 8 7 12 12 H 1.08002 * 120.00238 * 359.97438 * 11 10 8 13 13 C 1.38951 * 120.00205 * 180.02562 * 11 10 8 14 14 N 1.31415 * 119.99909 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00181 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47201 * 59.99764 * 15 13 11 17 17 H 1.48506 * 109.47027 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47090 * 299.99421 * 15 13 11 19 19 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 20 20 C 1.34775 * 120.00290 * 275.00553 * 19 2 1 21 21 O 1.21284 * 120.00239 * 359.97438 * 20 19 2 22 22 C 1.50707 * 119.99766 * 179.97438 * 20 19 2 23 23 C 1.54239 * 108.89521 * 301.39431 * 22 20 19 24 24 C 1.50559 * 108.48302 * 159.18241 * 23 22 20 25 25 C 1.54061 * 112.41562 * 94.26460 * 24 23 22 26 26 C 1.54068 * 112.82091 * 318.27948 * 25 24 23 27 27 C 1.50479 * 112.49274 * 318.28593 * 26 25 24 28 28 C 1.45545 * 108.89100 * 178.60291 * 22 20 19 29 29 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 31 31 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 32 32 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 33 33 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 34 34 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 35 35 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 36 36 H 1.00902 * 111.00582 * 303.95797 * 6 5 4 37 37 H 1.08995 * 109.47167 * 300.00240 * 7 6 5 38 38 H 1.09003 * 109.46442 * 60.00214 * 7 6 5 39 39 H 0.97000 * 119.99567 * 0.02562 * 10 8 7 40 40 H 0.96998 * 120.00315 * 179.97438 * 14 13 11 41 41 H 0.97003 * 119.99849 * 95.00425 * 19 2 1 42 42 H 1.08994 * 108.87232 * 59.99923 * 22 20 19 43 43 H 1.09006 * 109.62830 * 278.97540 * 23 22 20 44 44 H 1.08998 * 109.63056 * 39.55267 * 23 22 20 45 45 H 1.09004 * 108.92044 * 333.50748 * 24 23 22 46 46 H 1.08993 * 108.83304 * 214.96443 * 24 23 22 47 47 H 1.09005 * 108.81520 * 197.41670 * 25 24 23 48 48 H 1.09001 * 108.72801 * 79.07906 * 25 24 23 49 49 H 1.08996 * 108.88135 * 197.50760 * 26 25 24 50 50 H 1.09000 * 108.87694 * 79.06198 * 26 25 24 51 51 H 1.08997 * 109.63109 * 334.44567 * 27 26 25 52 52 H 1.08998 * 109.62888 * 213.85600 * 27 26 25 53 53 H 1.08997 * 108.89734 * 303.43978 * 28 22 20 54 54 H 1.09006 * 108.89253 * 62.03487 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0547 -1.3061 -2.5127 7 6 5.5183 -1.2225 -2.6081 8 6 5.9826 -1.9423 -3.8479 9 8 5.1740 -2.4724 -4.5802 10 7 7.2966 -1.9971 -4.1430 11 6 7.7191 -2.6514 -5.2712 12 1 6.9991 -3.1235 -5.9233 13 6 9.0737 -2.7084 -5.5751 14 7 9.9499 -2.1345 -4.7815 15 14 9.6495 -3.6006 -7.1120 16 1 9.0394 -2.9685 -8.3092 17 1 11.1290 -3.5166 -7.2081 18 1 9.2378 -5.0256 -7.0405 19 7 2.0183 -0.6905 1.1962 20 6 2.1469 -0.0182 2.3572 21 8 1.8588 1.1587 2.4115 22 6 2.6487 -0.7288 3.5878 23 6 1.7072 -1.9095 3.9016 24 6 2.4483 -2.8940 4.7666 25 6 2.1924 -2.6654 6.2685 26 6 2.1951 -1.1740 6.6549 27 6 3.2937 -0.4045 5.9727 28 6 2.7242 0.2249 4.6847 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6055 -0.2617 -2.1369 33 1 1.7517 -1.7714 -1.2056 34 1 3.9995 -1.0726 -0.4258 35 1 3.8532 0.4372 -1.3572 36 1 3.7453 -2.2664 -2.5272 37 1 5.8197 -0.1764 -2.6613 38 1 5.9666 -1.6856 -1.7291 39 1 7.9433 -1.5734 -3.5572 40 1 10.8956 -2.1745 -4.9934 41 1 2.2490 -1.6317 1.1527 42 1 3.6474 -1.1170 3.3882 43 1 0.8266 -1.5451 4.4307 44 1 1.4055 -2.3940 2.9730 45 1 3.5169 -2.8006 4.5727 46 1 2.1296 -3.9027 4.5041 47 1 2.9672 -3.1777 6.8391 48 1 1.2243 -3.0939 6.5278 49 1 2.3228 -1.0894 7.7340 50 1 1.2351 -0.7368 6.3801 51 1 4.1111 -1.0797 5.7198 52 1 3.6559 0.3817 6.6351 53 1 3.3625 1.0565 4.3862 54 1 1.7237 0.6048 4.8917 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482816656.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:58 Heat of formation + Delta-G solvation = -130.247739 kcal Electronic energy + Delta-G solvation = -29523.659300 eV Core-core repulsion = 25492.767738 eV Total energy + Delta-G solvation = -4030.891562 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.51740 -40.17053 -39.16945 -37.84130 -36.29281 -35.69717 -33.79553 -33.28105 -33.11043 -32.09422 -30.28524 -27.79303 -26.39547 -25.81137 -25.53712 -23.51242 -22.70974 -21.75079 -21.07580 -20.90089 -20.12926 -19.90905 -18.30088 -17.84074 -17.50372 -16.98906 -16.53067 -16.45002 -16.22430 -15.93694 -15.49965 -15.39101 -15.23520 -14.98099 -14.89131 -14.64490 -14.37290 -14.15205 -13.91177 -13.79086 -13.57450 -13.48166 -13.25670 -13.08424 -12.99386 -12.92013 -12.79470 -12.43798 -12.27067 -12.18537 -12.13829 -12.04544 -11.80263 -11.73142 -11.54476 -11.50277 -11.45546 -11.20540 -11.09288 -10.59720 -10.36815 -10.06450 -10.02287 -9.32432 -8.46756 -5.95808 1.40079 1.42107 1.53125 1.66416 2.04382 2.22839 2.29068 2.88481 3.20305 3.48871 3.63278 3.67752 3.81896 3.89132 4.03101 4.13383 4.20040 4.22990 4.27284 4.30643 4.36095 4.43421 4.43523 4.46261 4.46887 4.53049 4.61771 4.66592 4.67925 4.81953 4.92573 4.94735 4.99787 5.03428 5.10474 5.12056 5.19090 5.26605 5.29790 5.31569 5.35039 5.36794 5.38929 5.40535 5.50013 5.59320 5.60950 5.88000 6.09225 6.43147 6.59130 6.59446 7.11891 7.29777 7.55453 8.10437 8.70353 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.001832 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.310337 B =15278.094724 C =16424.348338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.147 3.853 3 H 0.068 0.932 4 C -0.113 4.113 5 C 0.063 3.937 6 N -0.683 5.683 7 C 0.065 3.935 8 C 0.437 3.563 9 O -0.622 6.622 10 N -0.573 5.573 11 C -0.335 4.335 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.994 3.006 16 H -0.273 1.273 17 H -0.271 1.271 18 H -0.270 1.270 19 N -0.713 5.713 20 C 0.511 3.489 21 O -0.585 6.585 22 C -0.095 4.095 23 C -0.102 4.102 24 C -0.119 4.119 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.110 4.110 28 C -0.102 4.102 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.347 0.653 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.412 0.588 42 H 0.108 0.892 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.054 0.946 51 H 0.073 0.927 52 H 0.066 0.934 53 H 0.048 0.952 54 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.669 0.174 24.250 28.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.042 3.958 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.065 4.065 6 N -0.316 5.316 7 C -0.067 4.067 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.210 5.210 11 C -0.465 4.465 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.561 5.561 15 Si 0.818 3.182 16 H -0.198 1.198 17 H -0.195 1.195 18 H -0.195 1.195 19 N -0.365 5.365 20 C 0.299 3.701 21 O -0.465 6.465 22 C -0.116 4.116 23 C -0.140 4.140 24 C -0.156 4.156 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.148 4.148 28 C -0.140 4.140 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.083 0.917 36 H 0.166 0.834 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.249 0.751 42 H 0.126 0.874 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.079 0.921 49 H 0.082 0.918 50 H 0.072 0.928 51 H 0.092 0.908 52 H 0.085 0.915 53 H 0.067 0.933 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.300 1.210 23.362 28.511 hybrid contribution 1.158 -0.795 0.054 1.406 sum -15.142 0.414 23.416 27.888 Atomic orbital electron populations 1.22084 0.94319 1.02849 1.02091 1.20845 0.94532 0.96648 0.83767 0.91423 1.21758 0.94091 1.02114 0.97145 1.21998 0.95685 0.98968 0.89885 1.60034 1.08517 1.21892 1.41120 1.21514 0.89816 1.01118 0.94300 1.20864 0.82343 0.84846 0.89464 1.90484 1.54143 1.52088 1.54164 1.41940 1.06331 1.49227 1.23537 1.19644 0.92360 1.32107 1.02347 0.90214 1.26069 0.95193 0.98109 1.02013 1.69668 1.02947 1.44452 1.39059 0.84973 0.77271 0.78523 0.77482 1.19794 1.19529 1.19517 1.46105 1.66713 1.14585 1.09123 1.21287 0.76453 0.86768 0.85567 1.90681 1.51947 1.18128 1.85785 1.20345 1.01889 0.97316 0.92015 1.21366 0.97678 0.94098 1.00808 1.21351 1.00815 0.99028 0.94401 1.21923 1.01984 0.95698 0.95884 1.21354 0.98680 0.95516 1.00211 1.21290 0.98563 0.99517 0.95423 1.20270 1.01397 0.97422 0.94898 0.91080 0.93786 0.90833 0.89672 0.89831 0.94130 0.91740 0.83421 0.88394 0.91511 0.77006 0.91280 0.75133 0.87400 0.91551 0.90391 0.91421 0.90965 0.91735 0.92079 0.91828 0.92772 0.90820 0.91548 0.93284 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 9.48 71.98 0.68 -1.75 16 2 C 0.15 2.53 2.57 44.99 0.12 2.65 16 3 H 0.07 1.50 7.58 -2.39 -0.02 1.48 16 4 C -0.11 -1.94 5.01 30.59 0.15 -1.78 16 5 C 0.06 1.38 5.57 86.30 0.48 1.86 16 6 N -0.68 -20.54 6.12 -517.93 -3.17 -23.71 16 7 C 0.06 2.20 6.17 85.55 0.53 2.73 16 8 C 0.44 20.71 7.82 87.65 0.69 21.40 16 9 O -0.62 -34.23 15.78 -3.06 -0.05 -34.28 16 10 N -0.57 -29.41 5.29 -306.99 -1.62 -31.03 16 11 C -0.34 -19.01 9.68 84.04 0.81 -18.20 16 12 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 13 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 14 N -0.92 -49.63 13.05 21.66 0.28 -49.34 16 15 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 18 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 19 N -0.71 -10.70 4.23 -442.54 -1.87 -12.57 16 20 C 0.51 9.87 7.07 87.66 0.62 10.49 16 21 O -0.59 -16.55 15.45 -3.04 -0.05 -16.59 16 22 C -0.09 -1.28 2.03 -13.39 -0.03 -1.31 16 23 C -0.10 -1.01 4.95 30.22 0.15 -0.86 16 24 C -0.12 -0.96 5.32 30.16 0.16 -0.80 16 25 C -0.12 -1.00 5.85 31.31 0.18 -0.82 16 26 C -0.12 -1.22 5.31 30.14 0.16 -1.06 16 27 C -0.11 -1.27 5.61 30.20 0.17 -1.10 16 28 C -0.10 -1.60 3.84 28.74 0.11 -1.49 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.04 0.77 7.75 -2.39 -0.02 0.76 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.35 10.57 8.43 -89.69 -0.76 9.81 16 37 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 38 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.40 19.31 7.90 -92.71 -0.73 18.58 16 40 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 41 H 0.41 4.17 7.87 -92.71 -0.73 3.44 16 42 H 0.11 1.21 7.46 -2.39 -0.02 1.19 16 43 H 0.07 0.77 6.97 -2.38 -0.02 0.76 16 44 H 0.08 0.62 7.03 -2.39 -0.02 0.60 16 45 H 0.07 0.54 6.63 -2.38 -0.02 0.52 16 46 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 48 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.05 0.63 6.62 -2.39 -0.02 0.62 16 51 H 0.07 0.76 6.98 -2.39 -0.02 0.74 16 52 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.05 0.95 7.89 -2.39 -0.02 0.93 16 54 H 0.05 0.98 7.37 -2.38 -0.02 0.97 16 Total: -1.00 -71.41 420.37 -0.32 -71.73 By element: Atomic # 1 Polarization: 42.67 SS G_CDS: -1.31 Total: 41.35 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 5.45 Total: 9.68 kcal Atomic # 7 Polarization: -110.27 SS G_CDS: -6.39 Total: -116.66 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -0.10 Total: -50.88 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -71.41 -0.32 -71.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482816656.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.521 kcal (2) G-P(sol) polarization free energy of solvation -71.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds