Wall clock time and date at job start Sat Apr 11 2020 05:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.47250 * 2 1 4 4 C 1.53005 * 109.47165 * 119.99486 * 2 1 3 5 5 C 1.52996 * 109.47469 * 184.99909 * 4 2 1 6 6 N 1.46492 * 109.47528 * 179.97438 * 5 4 2 7 7 C 1.36934 * 120.00588 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99619 * 0.02562 * 7 6 5 9 9 C 1.38808 * 120.00400 * 179.72758 * 7 6 5 10 10 N 1.31620 * 119.99806 * 0.27538 * 9 7 6 11 11 Si 1.86798 * 120.00249 * 180.27843 * 9 7 6 12 12 H 1.48497 * 109.47551 * 89.99658 * 11 9 7 13 13 H 1.48501 * 109.47273 * 210.00124 * 11 9 7 14 14 H 1.48503 * 109.47115 * 329.99871 * 11 9 7 15 15 N 1.46494 * 109.47318 * 239.99651 * 2 1 3 16 16 C 1.34777 * 120.00520 * 85.00262 * 15 2 1 17 17 O 1.21289 * 119.99626 * 359.97438 * 16 15 2 18 18 C 1.50693 * 120.00613 * 180.02562 * 16 15 2 19 19 H 1.08995 * 109.50479 * 327.94558 * 18 16 15 20 20 C 1.53099 * 109.50733 * 88.03230 * 18 16 15 21 21 O 1.43014 * 109.25960 * 176.78536 * 20 18 16 22 22 C 1.43018 * 113.73786 * 301.33157 * 21 20 18 23 23 C 1.53100 * 109.26136 * 58.66653 * 22 21 20 24 24 N 1.47012 * 109.25699 * 303.15644 * 23 22 21 25 25 C 1.46896 * 110.99867 * 182.39217 * 24 23 22 26 26 C 1.54259 * 110.03757 * 62.86333 * 25 24 23 27 27 C 1.54962 * 104.16274 * 217.14221 * 26 25 24 28 28 C 1.54884 * 102.78063 * 37.88305 * 27 26 25 29 29 C 1.53879 * 110.03207 * 305.64349 * 25 24 23 30 30 H 1.08998 * 109.47303 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47404 * 300.00640 * 1 2 3 32 32 H 1.09005 * 109.47013 * 60.00021 * 1 2 3 33 33 H 1.09002 * 109.46791 * 64.99830 * 4 2 1 34 34 H 1.09002 * 109.46871 * 305.00570 * 4 2 1 35 35 H 1.09007 * 109.46863 * 59.99830 * 5 4 2 36 36 H 1.09002 * 109.47397 * 300.00713 * 5 4 2 37 37 H 0.97008 * 120.00020 * 0.02562 * 6 5 4 38 38 H 0.97006 * 119.99573 * 179.97438 * 10 9 7 39 39 H 0.97005 * 120.00065 * 265.00127 * 15 2 1 40 40 H 1.08999 * 109.50573 * 296.72014 * 20 18 16 41 41 H 1.09002 * 109.50829 * 56.80606 * 20 18 16 42 42 H 1.08997 * 109.50633 * 178.60597 * 22 21 20 43 43 H 1.09007 * 109.50744 * 298.68818 * 22 21 20 44 44 H 1.09005 * 109.50022 * 63.08707 * 23 22 21 45 45 H 1.08995 * 109.50744 * 183.17163 * 23 22 21 46 46 H 1.09001 * 110.02163 * 184.25710 * 25 24 23 47 47 H 1.09009 * 110.48512 * 335.78753 * 26 25 24 48 48 H 1.09001 * 110.49121 * 98.42389 * 26 25 24 49 49 H 1.09005 * 110.71607 * 279.56710 * 27 26 25 50 50 H 1.09008 * 110.92630 * 156.29618 * 27 26 25 51 51 H 1.09000 * 110.48736 * 203.40440 * 28 27 26 52 52 H 1.09002 * 110.48332 * 80.76306 * 28 27 26 53 53 H 1.08997 * 110.03670 * 238.57045 * 29 25 24 54 54 H 1.09004 * 110.02754 * 359.95595 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.6133 1.3138 6 7 4.0530 -1.3032 2.5103 7 6 5.3951 -1.3399 2.7799 8 1 6.0936 -0.8599 2.1105 9 6 5.8572 -1.9888 3.9166 10 7 5.0059 -2.5735 4.7325 11 14 7.6873 -2.0323 4.2883 12 1 8.0528 -0.8538 5.1147 13 1 8.0124 -3.2770 5.0301 14 1 8.4519 -2.0006 3.0156 15 7 2.0183 -0.6906 -1.1961 16 6 2.1471 -0.0184 -2.3571 17 8 1.8582 1.1583 -2.4118 18 6 2.6489 -0.7290 -3.5876 19 1 3.3536 -1.5077 -3.2962 20 6 1.4684 -1.3599 -4.3308 21 8 1.9405 -1.9682 -5.5360 22 6 2.5983 -1.0577 -6.4211 23 6 3.7903 -0.4237 -5.6991 24 7 3.3194 0.2350 -4.4721 25 6 4.4259 0.9060 -3.7770 26 6 5.0083 2.0240 -4.6662 27 6 6.5323 1.9727 -4.3904 28 6 6.8061 0.4538 -4.2608 29 6 5.5686 -0.0918 -3.5188 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.7515 -1.7714 1.2057 34 1 1.6052 -0.2616 2.1370 35 1 3.8531 0.4371 1.3574 36 1 3.9994 -1.0727 0.4261 37 1 3.4257 -1.7347 3.1114 38 1 5.3289 -3.0273 5.5267 39 1 2.2490 -1.6318 -1.1524 40 1 1.0031 -2.1166 -3.6992 41 1 0.7373 -0.5888 -4.5738 42 1 2.9502 -1.5959 -7.3013 43 1 1.9002 -0.2781 -6.7262 44 1 4.5136 -1.1976 -5.4421 45 1 4.2609 0.3125 -6.3507 46 1 4.0752 1.3241 -2.8334 47 1 4.8040 1.8206 -5.7175 48 1 4.5999 2.9926 -4.3778 49 1 6.7736 2.4894 -3.4614 50 1 7.0932 2.3968 -5.2233 51 1 7.7095 0.2774 -3.6770 52 1 6.8924 -0.0036 -5.2465 53 1 5.7728 -0.1574 -2.4502 54 1 5.3016 -1.0741 -3.9087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482864236.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:05 Heat of formation + Delta-G solvation = -93.159002 kcal Electronic energy + Delta-G solvation = -31693.334879 eV Core-core repulsion = 27664.051605 eV Total energy + Delta-G solvation = -4029.283274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.93618 -40.17486 -38.85842 -37.85182 -36.12635 -35.32623 -33.73532 -32.85405 -31.59654 -29.83779 -29.65115 -29.42772 -26.48469 -26.06212 -25.74490 -23.49715 -22.77395 -22.03925 -21.64820 -21.33826 -20.17999 -19.22307 -18.33390 -17.91164 -17.55560 -17.15301 -16.71891 -16.58944 -16.38603 -15.83083 -15.68570 -15.59962 -15.46291 -15.14412 -15.05164 -14.95694 -14.49252 -14.36184 -14.26274 -13.89203 -13.54587 -13.13106 -12.99760 -12.91767 -12.90138 -12.71962 -12.57346 -12.43103 -12.36550 -12.29024 -12.04563 -12.02889 -11.99502 -11.96176 -11.71998 -11.66200 -11.51682 -11.34672 -11.00236 -10.95902 -10.58177 -10.09945 -9.36733 -9.04275 -7.99022 -5.28186 1.44694 1.46251 1.51515 1.54579 2.01009 2.52519 2.62114 2.91336 3.34614 3.53469 3.58352 3.60726 3.72921 3.77533 3.85930 3.95647 4.02740 4.05983 4.13911 4.24204 4.25098 4.36984 4.42478 4.46638 4.51642 4.54231 4.58212 4.61655 4.64068 4.64784 4.72202 4.73550 4.80205 4.84909 4.88898 4.97274 4.98122 5.00744 5.07517 5.15890 5.18633 5.24811 5.31344 5.31992 5.41497 5.44675 5.54152 5.83959 5.94717 6.04408 6.23575 6.52714 7.20987 7.30199 8.04812 8.29248 9.24234 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010020 B = 0.003257 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.763876 B = 8595.366229 C =10217.038166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 H 0.066 0.934 4 C -0.119 4.119 5 C 0.157 3.843 6 N -0.745 5.745 7 C -0.249 4.249 8 H 0.069 0.931 9 C -0.071 4.071 10 N -0.966 5.966 11 Si 0.971 3.029 12 H -0.287 1.287 13 H -0.291 1.291 14 H -0.271 1.271 15 N -0.713 5.713 16 C 0.523 3.477 17 O -0.556 6.556 18 C 0.034 3.966 19 H 0.073 0.927 20 C 0.083 3.917 21 O -0.389 6.389 22 C 0.058 3.942 23 C 0.013 3.987 24 N -0.514 5.514 25 C 0.079 3.921 26 C -0.108 4.108 27 C -0.122 4.122 28 C -0.116 4.116 29 C -0.159 4.159 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.004 0.996 36 H 0.020 0.980 37 H 0.376 0.624 38 H 0.253 0.747 39 H 0.409 0.591 40 H 0.118 0.882 41 H 0.060 0.940 42 H 0.124 0.876 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.109 0.891 46 H 0.059 0.941 47 H 0.087 0.913 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.087 0.913 51 H 0.063 0.937 52 H 0.080 0.920 53 H 0.045 0.955 54 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.506 3.883 -25.198 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.049 3.951 3 H 0.084 0.916 4 C -0.157 4.157 5 C 0.030 3.970 6 N -0.388 5.388 7 C -0.381 4.381 8 H 0.087 0.913 9 C -0.263 4.263 10 N -0.617 5.617 11 Si 0.800 3.200 12 H -0.214 1.214 13 H -0.218 1.218 14 H -0.196 1.196 15 N -0.365 5.365 16 C 0.309 3.691 17 O -0.433 6.433 18 C -0.079 4.079 19 H 0.091 0.909 20 C 0.005 3.995 21 O -0.307 6.307 22 C -0.018 4.018 23 C -0.114 4.114 24 N -0.239 5.239 25 C -0.030 4.030 26 C -0.145 4.145 27 C -0.160 4.160 28 C -0.153 4.153 29 C -0.199 4.199 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.022 0.978 36 H 0.038 0.962 37 H 0.208 0.792 38 H 0.062 0.938 39 H 0.245 0.755 40 H 0.136 0.864 41 H 0.078 0.922 42 H 0.142 0.858 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.127 0.873 46 H 0.077 0.923 47 H 0.105 0.895 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.106 0.894 51 H 0.082 0.918 52 H 0.099 0.901 53 H 0.064 0.936 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.928 4.930 -25.450 26.592 hybrid contribution 1.536 -0.840 1.535 2.328 sum -4.392 4.091 -23.915 24.657 Atomic orbital electron populations 1.22070 0.93366 1.03091 1.02464 1.20803 0.94990 0.96178 0.83106 0.91578 1.21904 0.94477 1.01838 0.97474 1.20714 0.93563 0.93953 0.88723 1.42548 1.04493 1.65301 1.26433 1.19562 0.85260 1.27989 1.05291 0.91288 1.25532 1.01959 1.01146 0.97685 1.69801 1.34598 1.41897 1.15358 0.85186 0.80178 0.76785 0.77901 1.21414 1.21764 1.19586 1.46142 1.66683 1.14576 1.09116 1.20426 0.77287 0.86942 0.84472 1.90686 1.50394 1.17010 1.85254 1.22288 0.99022 0.94338 0.92218 0.90941 1.22521 0.92739 0.98014 0.86207 1.88009 1.76179 1.36333 1.30196 1.22926 0.93066 0.93265 0.92591 1.23018 0.97872 0.98791 0.91768 1.62254 1.27868 1.28252 1.05531 1.22408 0.88753 0.94545 0.97265 1.22385 0.94913 0.97092 1.00147 1.22514 0.95389 0.96092 1.02017 1.22284 0.96581 0.95877 1.00604 1.22837 0.97062 0.99662 1.00291 0.90910 0.90661 0.93004 0.90176 0.90103 0.97842 0.96229 0.79182 0.93836 0.75456 0.86382 0.92214 0.85786 0.92006 0.93145 0.87330 0.92272 0.89458 0.92214 0.92472 0.89436 0.91847 0.90091 0.93625 0.91163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.48 71.98 0.68 -2.56 16 2 C 0.15 3.99 2.57 44.99 0.12 4.11 16 3 H 0.07 2.03 7.58 -2.38 -0.02 2.01 16 4 C -0.12 -3.51 4.87 30.59 0.15 -3.36 16 5 C 0.16 6.23 6.15 86.38 0.53 6.76 16 6 N -0.74 -37.80 5.60 -343.47 -1.92 -39.73 16 7 C -0.25 -14.07 9.99 84.03 0.84 -13.23 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 9 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 10 N -0.97 -58.71 13.06 21.65 0.28 -58.43 16 11 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 12 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 15 N -0.71 -16.96 4.53 -442.54 -2.00 -18.96 16 16 C 0.52 13.70 5.84 87.65 0.51 14.21 16 17 O -0.56 -18.58 15.13 -3.06 -0.05 -18.63 16 18 C 0.03 0.73 2.12 44.18 0.09 0.82 16 19 H 0.07 1.54 7.00 -2.39 -0.02 1.52 16 20 C 0.08 1.55 6.27 72.02 0.45 2.00 16 21 O -0.39 -7.32 10.83 -148.98 -1.61 -8.93 16 22 C 0.06 0.83 7.01 72.02 0.50 1.33 16 23 C 0.01 0.20 4.98 86.32 0.43 0.63 16 24 N -0.51 -10.98 4.27 -845.11 -3.61 -14.59 16 25 C 0.08 1.83 2.63 45.64 0.12 1.95 16 26 C -0.11 -2.05 6.33 31.69 0.20 -1.85 16 27 C -0.12 -2.07 6.91 31.91 0.22 -1.85 16 28 C -0.12 -2.02 6.83 31.67 0.22 -1.81 16 29 C -0.16 -3.47 5.40 31.32 0.17 -3.30 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 36 H 0.02 0.78 7.75 -2.39 -0.02 0.76 16 37 H 0.38 19.97 7.67 -92.70 -0.71 19.26 16 38 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 39 H 0.41 8.39 8.60 -92.70 -0.80 7.59 16 40 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.12 1.14 8.14 -2.39 -0.02 1.13 16 43 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.05 0.81 6.10 -2.38 -0.01 0.79 16 45 H 0.11 1.36 6.04 -2.39 -0.01 1.34 16 46 H 0.06 1.81 6.09 -2.39 -0.01 1.79 16 47 H 0.09 1.38 5.87 -2.38 -0.01 1.36 16 48 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 50 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 51 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 53 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 54 H 0.07 1.45 5.09 -2.38 -0.01 1.44 16 Total: -1.00 -70.18 411.38 -1.80 -71.98 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: -0.61 Total: 38.89 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 5.70 Total: 0.25 kcal Atomic # 7 Polarization: -124.46 SS G_CDS: -7.25 Total: -131.71 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -1.66 Total: -27.56 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -70.18 -1.80 -71.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482864236.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.179 kcal (2) G-P(sol) polarization free energy of solvation -70.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds