Wall clock time and date at job start Sat Apr 11 2020 05:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46993 * 2 1 4 4 C 1.52998 * 109.46825 * 239.99677 * 2 1 3 5 5 C 1.53004 * 109.47184 * 175.00156 * 4 2 1 6 6 N 1.46496 * 109.47065 * 179.97438 * 5 4 2 7 7 C 1.36939 * 119.99940 * 179.97438 * 6 5 4 8 8 H 1.08003 * 120.00076 * 359.97438 * 7 6 5 9 9 C 1.38810 * 120.00112 * 180.02562 * 7 6 5 10 10 N 1.31619 * 120.00008 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99897 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47239 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47160 * 120.00188 * 11 9 7 14 14 H 1.48499 * 109.47057 * 239.99868 * 11 9 7 15 15 N 1.46499 * 109.47240 * 120.00083 * 2 1 3 16 16 C 1.34787 * 119.99616 * 274.99917 * 15 2 1 17 17 O 1.21271 * 119.99987 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99620 * 180.02562 * 16 15 2 19 19 H 1.09001 * 109.54744 * 32.11280 * 18 16 15 20 20 C 1.53096 * 109.50589 * 272.00403 * 18 16 15 21 21 O 1.43009 * 109.29567 * 183.19912 * 20 18 16 22 22 C 1.43100 * 113.68873 * 58.64340 * 21 20 18 23 23 C 1.53097 * 109.28355 * 301.35907 * 22 21 20 24 24 N 1.47013 * 109.25683 * 56.85372 * 23 22 21 25 25 C 1.46896 * 111.00140 * 177.60665 * 24 23 22 26 26 C 1.54261 * 110.03505 * 59.31442 * 25 24 23 27 27 C 1.54960 * 104.16375 * 217.13876 * 26 25 24 28 28 C 1.54888 * 102.77672 * 37.88431 * 27 26 25 29 29 C 1.53871 * 110.03120 * 302.09231 * 25 24 23 30 30 H 1.09007 * 109.46825 * 300.00214 * 1 2 3 31 31 H 1.08996 * 109.47276 * 59.99673 * 1 2 3 32 32 H 1.09001 * 109.47565 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47409 * 294.99742 * 4 2 1 34 34 H 1.09006 * 109.47187 * 54.99986 * 4 2 1 35 35 H 1.08999 * 109.46610 * 300.00076 * 5 4 2 36 36 H 1.09000 * 109.46824 * 59.99587 * 5 4 2 37 37 H 0.97001 * 120.00254 * 359.97438 * 6 5 4 38 38 H 0.96996 * 119.99820 * 179.97438 * 10 9 7 39 39 H 0.96997 * 120.00467 * 94.99244 * 15 2 1 40 40 H 1.09004 * 109.50812 * 303.15246 * 20 18 16 41 41 H 1.08995 * 109.51108 * 63.24058 * 20 18 16 42 42 H 1.09007 * 109.49393 * 181.41878 * 22 21 20 43 43 H 1.08997 * 109.49840 * 61.31111 * 22 21 20 44 44 H 1.09001 * 109.51048 * 296.91871 * 23 22 21 45 45 H 1.09005 * 109.54230 * 176.80588 * 23 22 21 46 46 H 1.09005 * 110.01415 * 180.70440 * 25 24 23 47 47 H 1.09005 * 110.48490 * 335.78485 * 26 25 24 48 48 H 1.09005 * 110.49059 * 98.42249 * 26 25 24 49 49 H 1.09007 * 110.71709 * 279.57195 * 27 26 25 50 50 H 1.09001 * 110.92639 * 156.29314 * 27 26 25 51 51 H 1.09000 * 110.48864 * 203.40798 * 28 27 26 52 52 H 1.08997 * 110.60146 * 80.82208 * 28 27 26 53 53 H 1.08998 * 110.03477 * 238.56593 * 29 25 24 54 54 H 1.09001 * 110.03581 * 0.02562 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 7 4.0531 -1.3046 -2.5095 7 6 5.3951 -1.3407 -2.7795 8 1 6.0935 -0.8593 -2.1110 9 6 5.8578 -1.9952 -3.9128 10 7 5.0066 -2.5815 -4.7277 11 14 7.6884 -2.0438 -4.2814 12 1 8.4268 -1.3149 -3.2189 13 1 8.1474 -3.4554 -4.3246 14 1 7.9463 -1.3991 -5.5941 15 7 2.0184 -0.6906 1.1961 16 6 2.1471 -0.0181 2.3572 17 8 1.8591 1.1586 2.4114 18 6 2.6500 -0.7284 3.5875 19 1 3.3562 -1.5062 3.2965 20 6 1.4704 -1.3610 4.3306 21 8 1.9426 -1.9697 5.5355 22 6 2.6001 -1.0578 6.4209 23 6 3.7912 -0.4222 5.6989 24 7 3.3194 0.2363 4.4721 25 6 4.4250 0.9088 3.7770 26 6 5.5178 -0.1153 3.4075 27 6 6.8458 0.6561 3.6136 28 6 6.5558 1.5062 4.8755 29 6 5.0845 1.9398 4.7097 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.7516 -1.7716 -1.2055 34 1 1.6053 -0.2618 -2.1370 35 1 3.8531 0.4368 -1.3574 36 1 3.9994 -1.0729 -0.4259 37 1 3.4258 -1.7368 -3.1101 38 1 5.3299 -3.0385 -5.5198 39 1 2.2490 -1.6318 1.1527 40 1 0.7386 -0.5908 4.5745 41 1 1.0056 -2.1176 3.6986 42 1 2.9527 -1.5957 7.3010 43 1 1.9012 -0.2788 6.7256 44 1 4.5155 -1.1950 5.4417 45 1 4.2611 0.3150 6.3500 46 1 4.0555 1.4016 2.8776 47 1 5.4714 -0.9788 4.0711 48 1 5.4136 -0.4261 2.3679 49 1 7.0570 1.2961 2.7569 50 1 7.6720 -0.0319 3.7929 51 1 7.2092 2.3781 4.9066 52 1 6.6775 0.9071 5.7779 53 1 5.0360 2.9327 4.2625 54 1 4.5845 1.9408 5.6782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482864238.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:08 Heat of formation + Delta-G solvation = -93.593101 kcal Electronic energy + Delta-G solvation = -31734.025511 eV Core-core repulsion = 27704.723413 eV Total energy + Delta-G solvation = -4029.302098 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.93041 -40.16977 -38.85641 -37.85116 -36.12544 -35.31021 -33.73605 -32.86302 -31.60179 -29.79631 -29.69728 -29.42714 -26.48538 -26.03913 -25.71929 -23.49334 -22.82257 -22.15332 -21.60008 -21.21287 -20.18621 -19.23494 -18.42694 -17.91559 -17.58306 -17.03992 -16.69727 -16.54005 -16.15723 -15.82926 -15.79906 -15.60152 -15.55373 -15.26507 -15.07226 -14.99772 -14.47838 -14.32778 -14.27374 -13.81825 -13.46483 -13.13126 -12.98749 -12.93423 -12.90826 -12.88180 -12.58206 -12.41291 -12.30464 -12.25520 -12.03812 -12.02536 -12.00558 -11.95565 -11.66412 -11.62230 -11.54983 -11.40827 -11.01487 -10.97063 -10.57660 -10.09847 -9.35109 -9.04071 -7.99025 -5.28118 1.44811 1.45489 1.51810 1.55439 2.01436 2.52489 2.62910 2.91639 3.34774 3.53215 3.57830 3.61908 3.73792 3.78071 3.88559 3.92992 4.02793 4.06058 4.14006 4.22263 4.26395 4.37154 4.43852 4.47110 4.53345 4.54355 4.55815 4.58898 4.63917 4.64842 4.72956 4.73571 4.81005 4.84946 4.87281 4.95974 4.98359 5.00481 5.15201 5.17370 5.18845 5.24999 5.27120 5.32049 5.39804 5.45235 5.54312 5.84287 5.95152 6.04162 6.23747 6.52967 7.21299 7.30350 8.04874 8.29300 9.24441 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010158 B = 0.003276 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2755.907476 B = 8545.409209 C =10200.367971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.154 3.846 3 H 0.066 0.934 4 C -0.119 4.119 5 C 0.157 3.843 6 N -0.745 5.745 7 C -0.248 4.248 8 H 0.069 0.931 9 C -0.071 4.071 10 N -0.966 5.966 11 Si 0.970 3.030 12 H -0.269 1.269 13 H -0.289 1.289 14 H -0.292 1.292 15 N -0.713 5.713 16 C 0.523 3.477 17 O -0.556 6.556 18 C 0.034 3.966 19 H 0.073 0.927 20 C 0.082 3.918 21 O -0.389 6.389 22 C 0.058 3.942 23 C 0.012 3.988 24 N -0.515 5.515 25 C 0.079 3.921 26 C -0.159 4.159 27 C -0.122 4.122 28 C -0.116 4.116 29 C -0.113 4.113 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.004 0.996 36 H 0.020 0.980 37 H 0.376 0.624 38 H 0.253 0.747 39 H 0.409 0.591 40 H 0.059 0.941 41 H 0.118 0.882 42 H 0.124 0.876 43 H 0.062 0.938 44 H 0.050 0.950 45 H 0.109 0.891 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.044 0.956 49 H 0.056 0.944 50 H 0.074 0.926 51 H 0.075 0.925 52 H 0.080 0.920 53 H 0.060 0.940 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.482 3.841 25.149 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.049 3.951 3 H 0.084 0.916 4 C -0.157 4.157 5 C 0.030 3.970 6 N -0.388 5.388 7 C -0.379 4.379 8 H 0.087 0.913 9 C -0.264 4.264 10 N -0.617 5.617 11 Si 0.799 3.201 12 H -0.194 1.194 13 H -0.216 1.216 14 H -0.219 1.219 15 N -0.365 5.365 16 C 0.309 3.691 17 O -0.434 6.434 18 C -0.078 4.078 19 H 0.091 0.909 20 C 0.005 3.995 21 O -0.307 6.307 22 C -0.019 4.019 23 C -0.115 4.115 24 N -0.240 5.240 25 C -0.029 4.029 26 C -0.198 4.198 27 C -0.160 4.160 28 C -0.153 4.153 29 C -0.151 4.151 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.022 0.978 36 H 0.038 0.962 37 H 0.208 0.792 38 H 0.062 0.938 39 H 0.245 0.755 40 H 0.078 0.922 41 H 0.136 0.864 42 H 0.142 0.858 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.127 0.873 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.063 0.937 49 H 0.074 0.926 50 H 0.093 0.907 51 H 0.093 0.907 52 H 0.098 0.902 53 H 0.079 0.921 54 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.905 4.909 25.411 26.546 hybrid contribution 1.530 -0.836 -1.530 2.319 sum -4.375 4.073 23.882 24.618 Atomic orbital electron populations 1.22072 0.93377 1.03086 1.02460 1.20802 0.94983 0.96179 0.83110 0.91576 1.21906 0.94491 1.01831 0.97473 1.20715 0.93552 0.93949 0.88734 1.42558 1.04511 1.65202 1.26511 1.19596 0.85240 1.27690 1.05413 0.91268 1.25529 1.01930 1.01139 0.97757 1.69803 1.34504 1.41798 1.15559 0.85123 0.80220 0.77143 0.77582 1.19366 1.21634 1.21874 1.46144 1.66699 1.14570 1.09113 1.20426 0.77269 0.86931 0.84467 1.90678 1.50424 1.17011 1.85247 1.22274 0.99013 0.94300 0.92196 0.90896 1.22521 0.92771 0.98000 0.86240 1.88028 1.76209 1.36292 1.30194 1.22940 0.93089 0.93238 0.92595 1.23017 0.97839 0.98791 0.91816 1.62293 1.27913 1.28195 1.05554 1.22409 0.88953 0.94621 0.96943 1.23052 0.96705 0.99346 1.00668 1.22430 0.96486 0.98653 0.98471 1.22358 0.95343 0.99887 0.97735 1.22178 0.95578 0.97500 0.99811 0.93015 0.90657 0.90915 0.90185 0.90105 0.97826 0.96212 0.79186 0.93849 0.75465 0.92234 0.86400 0.85786 0.91992 0.93201 0.87294 0.92111 0.90291 0.93721 0.92552 0.90709 0.90665 0.90171 0.92144 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.48 71.98 0.68 -2.56 16 2 C 0.15 3.99 2.57 44.99 0.12 4.11 16 3 H 0.07 2.03 7.58 -2.39 -0.02 2.01 16 4 C -0.12 -3.51 4.87 30.59 0.15 -3.36 16 5 C 0.16 6.22 6.15 86.38 0.53 6.75 16 6 N -0.74 -37.75 5.60 -343.45 -1.92 -39.68 16 7 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 8 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 9 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 10 N -0.97 -58.68 13.06 21.65 0.28 -58.39 16 11 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 12 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 13 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 14 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 15 N -0.71 -16.95 4.53 -442.54 -2.00 -18.95 16 16 C 0.52 13.70 5.93 87.66 0.52 14.22 16 17 O -0.56 -18.58 15.07 -3.00 -0.05 -18.63 16 18 C 0.03 0.74 2.11 44.18 0.09 0.84 16 19 H 0.07 1.55 7.27 -2.39 -0.02 1.53 16 20 C 0.08 1.54 6.27 72.01 0.45 1.99 16 21 O -0.39 -7.32 10.83 -148.98 -1.61 -8.94 16 22 C 0.06 0.82 7.01 72.01 0.50 1.33 16 23 C 0.01 0.19 4.98 86.31 0.43 0.62 16 24 N -0.51 -10.97 4.26 -845.08 -3.60 -14.57 16 25 C 0.08 1.83 2.64 45.64 0.12 1.95 16 26 C -0.16 -3.50 5.14 31.69 0.16 -3.34 16 27 C -0.12 -2.39 6.91 31.91 0.22 -2.17 16 28 C -0.12 -1.79 6.83 31.67 0.22 -1.57 16 29 C -0.11 -2.11 5.92 31.32 0.19 -1.92 16 30 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 2.40 8.14 -2.38 -0.02 2.39 16 35 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.02 0.78 7.75 -2.39 -0.02 0.76 16 37 H 0.38 19.95 7.67 -92.71 -0.71 19.24 16 38 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 39 H 0.41 8.39 8.60 -92.71 -0.80 7.59 16 40 H 0.06 1.20 8.14 -2.38 -0.02 1.19 16 41 H 0.12 1.77 8.14 -2.39 -0.02 1.76 16 42 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.05 0.80 6.02 -2.39 -0.01 0.78 16 45 H 0.11 1.36 6.13 -2.38 -0.01 1.34 16 46 H 0.06 1.86 6.19 -2.38 -0.01 1.84 16 47 H 0.08 1.58 5.59 -2.38 -0.01 1.56 16 48 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 49 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 50 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 52 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 53 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 54 H 0.08 1.39 6.23 -2.39 -0.01 1.38 16 Total: -1.00 -70.11 411.96 -1.81 -71.92 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.62 Total: 38.93 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 5.69 Total: 0.16 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -7.25 Total: -131.59 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -1.66 Total: -27.56 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -70.11 -1.81 -71.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482864238.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.675 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds