Wall clock time and date at job start Sat Apr 11 2020 05:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47003 * 2 1 4 4 C 1.52994 * 109.47110 * 120.00625 * 2 1 3 5 5 C 1.53004 * 109.46957 * 185.00221 * 4 2 1 6 6 N 1.46500 * 109.47195 * 179.97438 * 5 4 2 7 7 C 1.36934 * 119.99981 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00250 * 0.02562 * 7 6 5 9 9 C 1.38816 * 119.99920 * 180.02562 * 7 6 5 10 10 N 1.31618 * 119.99751 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99974 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46663 * 90.00055 * 11 9 7 13 13 H 1.48497 * 109.47119 * 209.99910 * 11 9 7 14 14 H 1.48500 * 109.47181 * 330.00374 * 11 9 7 15 15 N 1.46497 * 109.46806 * 240.00570 * 2 1 3 16 16 C 1.34780 * 120.00536 * 85.00149 * 15 2 1 17 17 O 1.21280 * 119.99639 * 359.97438 * 16 15 2 18 18 C 1.50699 * 120.00394 * 179.97438 * 16 15 2 19 19 N 1.46501 * 109.47106 * 179.97438 * 18 16 15 20 20 C 1.34771 * 119.99915 * 180.02562 * 19 18 16 21 21 O 1.21278 * 120.00224 * 359.97438 * 20 19 18 22 22 C 1.50696 * 120.00023 * 180.02562 * 20 19 18 23 23 C 1.53002 * 109.47344 * 179.97438 * 22 20 19 24 24 C 1.52997 * 109.46817 * 64.99877 * 23 22 20 25 25 C 1.52999 * 109.47317 * 179.97438 * 24 23 22 26 26 C 1.53005 * 109.47159 * 300.00546 * 25 24 23 27 27 C 1.52997 * 109.47452 * 59.99536 * 26 25 24 28 28 C 1.53000 * 109.47233 * 184.99683 * 23 22 20 29 29 H 1.09004 * 109.46927 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47225 * 299.99445 * 1 2 3 31 31 H 1.09005 * 109.47373 * 59.99679 * 1 2 3 32 32 H 1.09000 * 109.47068 * 304.99373 * 4 2 1 33 33 H 1.08991 * 109.47503 * 65.00168 * 4 2 1 34 34 H 1.09001 * 109.46818 * 299.99947 * 5 4 2 35 35 H 1.09001 * 109.47177 * 59.99495 * 5 4 2 36 36 H 0.97004 * 119.99458 * 0.02562 * 6 5 4 37 37 H 0.97005 * 119.99947 * 179.97438 * 10 9 7 38 38 H 0.96999 * 119.99900 * 264.99716 * 15 2 1 39 39 H 1.08995 * 109.46850 * 59.99719 * 18 16 15 40 40 H 1.08997 * 109.46916 * 299.99896 * 18 16 15 41 41 H 0.97002 * 119.99602 * 359.97438 * 19 18 16 42 42 H 1.09008 * 109.47224 * 59.99699 * 22 20 19 43 43 H 1.08997 * 109.47214 * 299.99692 * 22 20 19 44 44 H 1.09002 * 109.47070 * 305.00057 * 23 22 20 45 45 H 1.08996 * 109.47853 * 300.00202 * 24 23 22 46 46 H 1.09002 * 109.47153 * 60.00231 * 24 23 22 47 47 H 1.09000 * 109.47486 * 180.02562 * 25 24 23 48 48 H 1.09002 * 109.46716 * 60.00091 * 25 24 23 49 49 H 1.09002 * 109.46935 * 299.99411 * 26 25 24 50 50 H 1.09001 * 109.46812 * 179.97438 * 26 25 24 51 51 H 1.08993 * 109.47194 * 179.97438 * 27 26 25 52 52 H 1.09002 * 109.46695 * 59.99734 * 27 26 25 53 53 H 1.08992 * 109.47399 * 300.00166 * 28 23 22 54 54 H 1.09004 * 109.46724 * 60.00652 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5649 -0.6133 1.3136 6 7 4.0532 -1.3035 2.5100 7 6 5.3953 -1.3402 2.7794 8 1 6.0938 -0.8600 2.1102 9 6 5.8580 -1.9947 3.9128 10 7 5.0067 -2.5795 4.7286 11 14 7.6889 -2.0453 4.2800 12 1 8.0599 -0.8709 5.1097 13 1 8.0117 -3.2937 5.0165 14 1 8.4505 -2.0114 3.0056 15 7 2.0183 -0.6905 -1.1962 16 6 2.1470 -0.0181 -2.3572 17 8 1.8582 1.1585 -2.4117 18 6 2.6498 -0.7283 -3.5876 19 7 2.6984 0.2130 -4.7092 20 6 3.1197 -0.2027 -5.9200 21 8 3.4589 -1.3559 -6.0810 22 6 3.1702 0.7656 -7.0735 23 6 3.6806 0.0446 -8.3228 24 6 2.6731 -1.0289 -8.7393 25 6 3.1831 -1.7496 -9.9889 26 6 3.3525 -0.7403 -11.1263 27 6 4.3600 0.3332 -10.7098 28 6 3.8503 1.0535 -9.4604 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6055 -0.2619 2.1369 33 1 1.7517 -1.7715 1.2054 34 1 3.9995 -1.0727 0.4258 35 1 3.8532 0.4369 1.3573 36 1 3.4258 -1.7352 3.1108 37 1 5.3301 -3.0371 5.5204 38 1 2.2490 -1.6316 -1.1528 39 1 1.9776 -1.5505 -3.8326 40 1 3.6491 -1.1201 -3.3980 41 1 2.4267 1.1352 -4.5804 42 1 3.8429 1.5877 -6.8286 43 1 2.1710 1.1578 -7.2628 44 1 4.6409 -0.4231 -8.1055 45 1 2.5521 -1.7477 -7.9289 46 1 1.7128 -0.5612 -8.9565 47 1 2.4652 -2.5141 -10.2859 48 1 4.1435 -2.2172 -9.7720 49 1 2.3921 -0.2727 -11.3431 50 1 3.7163 -1.2537 -12.0163 51 1 4.4810 1.0519 -11.5202 52 1 5.3204 -0.1345 -10.4929 53 1 2.8901 1.5211 -9.6777 54 1 4.5682 1.8182 -9.1636 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482904075.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:34 Heat of formation + Delta-G solvation = -126.893773 kcal Electronic energy + Delta-G solvation = -29022.460344 eV Core-core repulsion = 24991.714221 eV Total energy + Delta-G solvation = -4030.746123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.41696 -40.64288 -39.00786 -37.93773 -36.17018 -35.43982 -33.72981 -33.58095 -32.30129 -31.54595 -29.65956 -29.30973 -27.22981 -25.86058 -23.52260 -23.39305 -22.76663 -22.09328 -21.56443 -21.26059 -20.57367 -19.27447 -18.64256 -17.71610 -17.20934 -17.01850 -16.73863 -16.52683 -16.19350 -15.99639 -15.50964 -15.36199 -15.25348 -14.98154 -14.95418 -14.87456 -14.49964 -14.29545 -14.17942 -13.91283 -13.46201 -13.23666 -13.10791 -12.97596 -12.90627 -12.89968 -12.84090 -12.46932 -12.38965 -12.27627 -12.00654 -11.94905 -11.93896 -11.81786 -11.64934 -11.30665 -11.28355 -11.07168 -10.95275 -10.89353 -10.59718 -10.23997 -10.08266 -9.01904 -7.97623 -5.26371 1.46295 1.47294 1.47554 1.55992 1.65128 1.79790 2.46905 2.53984 3.36141 3.53679 3.67644 3.73321 3.80542 3.86379 4.04876 4.06284 4.16458 4.25611 4.31543 4.35747 4.36564 4.38807 4.51797 4.56555 4.60485 4.64413 4.65512 4.70431 4.77148 4.78263 4.85400 4.85878 4.89996 4.98671 5.07101 5.19202 5.21324 5.27002 5.27456 5.29704 5.33778 5.34198 5.37457 5.45105 5.47162 5.52011 5.58642 5.65014 6.25105 6.44035 6.50144 7.09771 7.22333 7.31768 8.07415 8.30812 9.25514 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013423 B = 0.001737 C = 0.001596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.542490 B =16119.068030 C =17541.378224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.153 3.847 3 H 0.073 0.927 4 C -0.120 4.120 5 C 0.152 3.848 6 N -0.746 5.746 7 C -0.249 4.249 8 H 0.071 0.929 9 C -0.073 4.073 10 N -0.966 5.966 11 Si 0.972 3.028 12 H -0.287 1.287 13 H -0.293 1.293 14 H -0.271 1.271 15 N -0.708 5.708 16 C 0.514 3.486 17 O -0.571 6.571 18 C 0.102 3.898 19 N -0.717 5.717 20 C 0.511 3.489 21 O -0.573 6.573 22 C -0.132 4.132 23 C -0.069 4.069 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.111 4.111 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.024 0.976 35 H 0.008 0.992 36 H 0.376 0.624 37 H 0.252 0.748 38 H 0.414 0.586 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.416 0.584 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.048 0.952 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.072 0.928 52 H 0.053 0.947 53 H 0.073 0.927 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.839 7.243 -30.534 32.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.048 3.952 3 H 0.091 0.909 4 C -0.158 4.158 5 C 0.026 3.974 6 N -0.389 5.389 7 C -0.381 4.381 8 H 0.089 0.911 9 C -0.265 4.265 10 N -0.617 5.617 11 Si 0.801 3.199 12 H -0.214 1.214 13 H -0.219 1.219 14 H -0.196 1.196 15 N -0.360 5.360 16 C 0.300 3.700 17 O -0.451 6.451 18 C -0.026 4.026 19 N -0.372 5.372 20 C 0.300 3.700 21 O -0.452 6.452 22 C -0.171 4.171 23 C -0.088 4.088 24 C -0.155 4.155 25 C -0.157 4.157 26 C -0.155 4.155 27 C -0.158 4.158 28 C -0.148 4.148 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.026 0.974 36 H 0.208 0.792 37 H 0.061 0.939 38 H 0.251 0.749 39 H 0.128 0.872 40 H 0.118 0.882 41 H 0.254 0.746 42 H 0.131 0.869 43 H 0.133 0.867 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.067 0.933 49 H 0.085 0.915 50 H 0.081 0.919 51 H 0.091 0.909 52 H 0.072 0.928 53 H 0.092 0.908 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.633 7.299 -30.696 32.990 hybrid contribution 0.885 -0.515 1.158 1.546 sum -8.748 6.784 -29.539 31.545 Atomic orbital electron populations 1.22084 0.93448 1.02988 1.02593 1.20849 0.94902 0.96476 0.82941 0.90881 1.21907 0.94514 1.01821 0.97531 1.20789 0.93564 0.94236 0.88820 1.42558 1.04441 1.65332 1.26530 1.19599 0.85353 1.27729 1.05402 0.91064 1.25544 1.01941 1.01205 0.97846 1.69800 1.34542 1.41805 1.15518 0.85172 0.80220 0.76697 0.77860 1.21425 1.21934 1.19618 1.46005 1.66094 1.14877 1.09025 1.20664 0.77069 0.86985 0.85238 1.90668 1.52044 1.17024 1.85318 1.21048 1.03896 0.93084 0.84549 1.45812 1.67696 1.14996 1.08745 1.21300 0.75420 0.89290 0.83993 1.90682 1.49449 1.20976 1.84092 1.21808 1.05722 0.97912 0.91676 1.20880 0.98872 0.95800 0.93244 1.21657 0.98258 0.98047 0.97573 1.21505 1.00660 0.98059 0.95435 1.21542 0.99833 0.96669 0.97476 1.21526 0.98476 0.98007 0.97793 1.21570 1.02171 0.97138 0.93947 0.91219 0.90589 0.92802 0.90095 0.90299 0.95833 0.97415 0.79236 0.93916 0.74949 0.87205 0.88235 0.74571 0.86862 0.86659 0.92550 0.92603 0.91774 0.92205 0.93283 0.91482 0.91863 0.90923 0.92809 0.90795 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.48 71.98 0.68 -2.29 16 2 C 0.15 3.60 2.57 44.99 0.12 3.72 16 3 H 0.07 2.01 7.58 -2.39 -0.02 1.99 16 4 C -0.12 -3.34 4.87 30.59 0.15 -3.19 16 5 C 0.15 5.82 6.15 86.38 0.53 6.35 16 6 N -0.75 -37.26 5.60 -343.44 -1.92 -39.19 16 7 C -0.25 -13.94 9.99 84.03 0.84 -13.10 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.85 16 9 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 10 N -0.97 -58.55 13.06 21.65 0.28 -58.27 16 11 Si 0.97 46.12 29.55 68.60 2.03 48.14 16 12 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 13 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 15 N -0.71 -14.85 4.53 -442.54 -2.00 -16.85 16 16 C 0.51 11.39 7.86 87.66 0.69 12.08 16 17 O -0.57 -15.78 15.33 -3.03 -0.05 -15.83 16 18 C 0.10 1.90 6.15 85.63 0.53 2.43 16 19 N -0.72 -12.97 5.53 -466.81 -2.58 -15.55 16 20 C 0.51 9.84 7.55 87.66 0.66 10.50 16 21 O -0.57 -15.15 13.97 -3.02 -0.04 -15.20 16 22 C -0.13 -1.61 5.17 29.85 0.15 -1.45 16 23 C -0.07 -0.98 1.84 -10.79 -0.02 -1.00 16 24 C -0.12 -1.88 4.94 30.59 0.15 -1.73 16 25 C -0.12 -1.75 5.92 30.60 0.18 -1.57 16 26 C -0.12 -1.32 5.92 30.60 0.18 -1.14 16 27 C -0.12 -1.27 5.92 30.58 0.18 -1.09 16 28 C -0.11 -1.11 5.20 30.58 0.16 -0.95 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.02 0.89 7.75 -2.39 -0.02 0.87 16 35 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.38 19.70 7.67 -92.71 -0.71 18.99 16 37 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 38 H 0.41 7.34 8.60 -92.71 -0.80 6.54 16 39 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.42 6.90 7.44 -92.71 -0.69 6.21 16 42 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.06 1.06 7.95 -2.39 -0.02 1.04 16 45 H 0.06 1.20 5.95 -2.39 -0.01 1.19 16 46 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 54 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -71.67 427.72 0.05 -71.62 By element: Atomic # 1 Polarization: 38.58 SS G_CDS: -1.31 Total: 37.27 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 5.65 Total: 3.85 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -6.23 Total: -129.87 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.09 Total: -31.02 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -71.67 0.05 -71.62 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482904075.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.273 kcal (2) G-P(sol) polarization free energy of solvation -71.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds