Wall clock time and date at job start Sat Apr 11 2020 05:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99817 * 2 1 4 4 H 1.09000 * 109.47814 * 330.00152 * 3 2 1 5 5 C 1.53005 * 109.47090 * 90.00358 * 3 2 1 6 6 C 1.53003 * 109.47209 * 209.99927 * 3 2 1 7 7 C 1.53006 * 109.46827 * 65.00193 * 6 3 2 8 8 C 1.50698 * 109.47081 * 179.97438 * 7 6 3 9 9 O 1.21276 * 120.00145 * 0.02562 * 8 7 6 10 10 N 1.34770 * 120.00029 * 180.02562 * 8 7 6 11 11 C 1.47080 * 120.88286 * 179.97438 * 10 8 7 12 12 C 1.53242 * 108.52212 * 231.20635 * 11 10 8 13 13 N 1.46896 * 109.34212 * 306.16963 * 12 11 10 14 14 C 1.46894 * 111.00245 * 187.25334 * 13 12 11 15 15 H 1.08998 * 110.88953 * 303.88347 * 14 13 12 16 16 C 1.55159 * 111.00716 * 179.97438 * 14 13 12 17 17 C 1.54322 * 102.94404 * 206.42473 * 16 14 13 18 18 N 1.47024 * 107.27070 * 22.19329 * 17 16 14 19 19 C 1.36933 * 125.64785 * 181.02509 * 18 17 16 20 20 H 1.08000 * 120.00253 * 169.69829 * 19 18 17 21 21 C 1.38821 * 119.99955 * 349.69911 * 19 18 17 22 22 N 1.31613 * 120.00026 * 152.99771 * 21 19 18 23 23 Si 1.86804 * 119.99745 * 332.99648 * 21 19 18 24 24 H 1.48498 * 109.47218 * 85.20312 * 23 21 19 25 25 H 1.48496 * 109.46975 * 325.20024 * 23 21 19 26 26 H 1.48504 * 109.46647 * 205.20591 * 23 21 19 27 27 C 1.47425 * 108.70346 * 1.28801 * 18 17 16 28 28 C 1.46896 * 111.26817 * 63.10356 * 13 12 11 29 29 C 1.47081 * 120.88323 * 0.02562 * 10 8 7 30 30 H 1.09000 * 109.47135 * 59.99547 * 1 2 3 31 31 H 1.08996 * 109.46937 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46803 * 299.99617 * 1 2 3 33 33 H 1.08997 * 109.47043 * 179.97438 * 5 3 2 34 34 H 1.08994 * 109.46762 * 300.00122 * 5 3 2 35 35 H 1.09006 * 109.47016 * 59.99725 * 5 3 2 36 36 H 1.08997 * 109.46966 * 305.00702 * 6 3 2 37 37 H 1.08992 * 109.47272 * 185.00034 * 6 3 2 38 38 H 1.09002 * 109.46996 * 60.00019 * 7 6 3 39 39 H 1.08997 * 109.47121 * 300.00423 * 7 6 3 40 40 H 1.09000 * 109.62558 * 111.49728 * 11 10 8 41 41 H 1.09001 * 109.62914 * 350.91480 * 11 10 8 42 42 H 1.09004 * 109.49242 * 186.20814 * 12 11 10 43 43 H 1.09000 * 109.48907 * 66.13305 * 12 11 10 44 44 H 1.09006 * 110.71662 * 88.05705 * 16 14 13 45 45 H 1.08998 * 110.86873 * 324.86127 * 16 14 13 46 46 H 1.09007 * 109.88039 * 262.77550 * 17 16 14 47 47 H 1.09002 * 109.88378 * 141.61121 * 17 16 14 48 48 H 0.97002 * 120.00332 * 5.05189 * 22 21 19 49 49 H 1.08998 * 110.36628 * 94.47879 * 27 18 17 50 50 H 1.09000 * 110.36661 * 216.81007 * 27 18 17 51 51 H 1.08999 * 109.49746 * 56.85762 * 28 13 12 52 52 H 1.09000 * 109.49590 * 176.93984 * 28 13 12 53 53 H 1.09004 * 109.63009 * 248.50627 * 29 10 8 54 54 H 1.08997 * 109.62889 * 9.08359 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9995 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 3.3589 1.2634 -0.7212 7 6 3.1382 0.9185 -2.1955 8 6 4.4665 0.8776 -2.9061 9 8 5.4890 1.1017 -2.2936 10 7 4.5182 0.5921 -4.2222 11 6 5.8039 0.5475 -4.9351 12 6 5.6977 1.4264 -6.1859 13 7 4.5336 1.0072 -6.9777 14 6 4.4943 1.7083 -8.2679 15 1 4.5000 2.7886 -8.1235 16 6 3.2651 1.2651 -9.1046 17 6 3.7268 1.5141 -10.5559 18 7 5.1971 1.5206 -10.5512 19 6 5.9977 1.7303 -11.6421 20 1 7.0592 1.8812 -11.5120 21 6 5.4450 1.7487 -12.9154 22 7 6.0245 2.4392 -13.8744 23 14 3.8788 0.7935 -13.2677 24 1 2.7013 1.6219 -12.9039 25 1 3.8710 -0.4569 -12.4667 26 1 3.8194 0.4561 -14.7127 27 6 5.6666 1.2577 -9.1787 28 6 3.2831 1.2052 -6.2327 29 6 3.2903 0.3178 -4.9840 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.6614 2.7669 1.4425 34 1 1.2569 1.8014 1.9564 35 1 2.8830 1.0774 1.9563 36 1 3.9930 0.5052 -0.2618 37 1 3.8426 2.2370 -0.6443 38 1 2.5040 1.6767 -2.6550 39 1 2.6544 -0.0551 -2.2724 40 1 6.0254 -0.4791 -5.2267 41 1 6.5949 0.9261 -4.2877 42 1 6.6024 1.3186 -6.7842 43 1 5.5795 2.4686 -5.8891 44 1 2.3953 1.8772 -8.8661 45 1 3.0471 0.2091 -8.9451 46 1 3.3530 2.4772 -10.9038 47 1 3.3617 0.7167 -11.2032 48 1 6.8758 2.8750 -13.7119 49 1 5.8680 0.1951 -9.0437 50 1 6.5599 1.8444 -8.9644 51 1 3.1985 2.2504 -5.9353 52 1 2.4367 0.9368 -6.8648 53 1 3.2698 -0.7310 -5.2803 54 1 2.4195 0.5444 -4.3689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484023589.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:49 Heat of formation + Delta-G solvation = -68.793341 kcal Electronic energy + Delta-G solvation = -30424.810815 eV Core-core repulsion = 26396.584116 eV Total energy + Delta-G solvation = -4028.226700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38139 -40.10311 -39.24277 -38.21005 -35.66625 -34.76258 -34.18703 -32.55940 -31.21761 -31.10334 -29.81297 -27.71763 -27.42158 -25.95239 -25.05333 -24.46381 -22.55561 -22.18154 -21.89091 -21.21559 -19.86039 -19.52855 -18.36468 -17.80572 -17.26702 -17.02329 -16.90511 -16.60324 -16.04329 -15.97473 -15.87066 -15.71667 -15.51291 -15.18772 -14.88833 -14.72135 -14.43895 -14.15928 -14.01973 -13.93269 -13.56365 -13.38169 -13.33666 -13.19705 -13.00722 -12.92890 -12.64658 -12.43678 -12.31514 -12.25070 -12.19411 -12.13191 -12.04951 -11.81279 -11.63522 -11.54369 -11.52221 -11.07182 -10.84086 -10.58519 -10.49319 -9.84137 -9.31637 -9.17552 -8.65851 -5.43300 1.39869 1.53346 1.60790 1.72653 1.94143 2.52067 2.67673 2.91233 3.08435 3.43891 3.46837 3.59566 3.80931 3.86034 3.91960 4.01166 4.10017 4.14021 4.19310 4.21559 4.31468 4.34526 4.37771 4.40410 4.44990 4.53043 4.56876 4.57225 4.65932 4.71535 4.72713 4.75761 4.80639 4.84840 4.87104 4.92970 4.94243 4.96905 4.99452 5.05150 5.08174 5.12782 5.22165 5.24932 5.33386 5.44009 5.55947 5.97362 6.05560 6.10780 6.35709 6.41830 6.82480 7.13890 7.47630 8.12575 8.83003 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025454 B = 0.002019 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.762023 B =13864.723761 C =14621.985508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.086 3.914 4 H 0.081 0.919 5 C -0.175 4.175 6 C -0.099 4.099 7 C -0.128 4.128 8 C 0.509 3.491 9 O -0.590 6.590 10 N -0.615 5.615 11 C 0.122 3.878 12 C 0.048 3.952 13 N -0.528 5.528 14 C 0.087 3.913 15 H 0.045 0.955 16 C -0.104 4.104 17 C 0.105 3.895 18 N -0.631 5.631 19 C -0.323 4.323 20 H 0.041 0.959 21 C -0.078 4.078 22 N -0.952 5.952 23 Si 1.115 2.885 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.306 1.306 27 C 0.144 3.856 28 C 0.036 3.964 29 C 0.113 3.887 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.030 0.970 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.027 0.973 47 H 0.026 0.974 48 H 0.247 0.753 49 H 0.033 0.967 50 H 0.025 0.975 51 H 0.038 0.962 52 H 0.111 0.889 53 H 0.086 0.914 54 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.595 -3.972 30.732 35.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C 0.029 3.971 4 H 0.099 0.901 5 C -0.233 4.233 6 C -0.137 4.137 7 C -0.167 4.167 8 C 0.300 3.700 9 O -0.471 6.471 10 N -0.348 5.348 11 C -0.001 4.001 12 C -0.081 4.081 13 N -0.253 5.253 14 C -0.022 4.022 15 H 0.063 0.937 16 C -0.142 4.142 17 C -0.020 4.020 18 N -0.359 5.359 19 C -0.452 4.452 20 H 0.059 0.941 21 C -0.273 4.273 22 N -0.595 5.595 23 Si 0.942 3.058 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.235 1.235 27 C 0.018 3.982 28 C -0.092 4.092 29 C -0.009 4.009 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.135 0.865 39 H 0.131 0.869 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.049 0.951 44 H 0.120 0.880 45 H 0.112 0.888 46 H 0.045 0.955 47 H 0.044 0.956 48 H 0.056 0.944 49 H 0.050 0.950 50 H 0.044 0.956 51 H 0.056 0.944 52 H 0.129 0.871 53 H 0.104 0.896 54 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.956 -4.818 29.759 34.588 hybrid contribution 2.137 1.622 0.699 2.772 sum -14.819 -3.197 30.457 34.022 Atomic orbital electron populations 1.22948 0.79876 1.03543 1.00855 1.87919 1.21043 1.28419 1.95221 1.22190 0.94216 0.84792 0.95897 0.90127 1.22273 1.02538 1.01922 0.96538 1.21413 0.96217 1.02616 0.93423 1.21679 0.93472 1.06030 0.95555 1.21387 0.92345 0.74810 0.81470 1.90670 1.38296 1.51626 1.66481 1.48354 1.08681 1.69152 1.08589 1.21554 0.86308 1.00529 0.91686 1.22393 0.94705 0.96706 0.94308 1.61897 1.03386 1.57226 1.02777 1.22564 0.96071 0.95100 0.88477 0.93667 1.22605 0.97020 1.03426 0.91149 1.21860 0.83956 0.98135 0.98008 1.44854 1.01778 1.84629 1.04666 1.19909 0.91665 1.46955 0.86632 0.94141 1.27133 1.08842 0.99768 0.91509 1.71040 1.18080 1.32489 1.37937 0.83143 0.72839 0.76131 0.73713 1.19192 1.20267 1.23491 1.21629 0.95231 0.97588 0.83705 1.22650 0.92642 0.98563 0.95358 1.22092 0.86457 1.00569 0.91732 0.92606 0.89090 0.93629 0.90763 0.91644 0.92891 0.92621 0.90476 0.86489 0.86910 0.90404 0.90068 0.90212 0.95141 0.88001 0.88773 0.95463 0.95626 0.94362 0.94954 0.95628 0.94373 0.87107 0.89588 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.82 113.37 1.23 1.40 16 2 O -0.41 -5.38 9.88 -148.98 -1.47 -6.85 16 3 C 0.09 0.94 2.72 30.60 0.08 1.03 16 4 H 0.08 0.57 7.79 -2.39 -0.02 0.55 16 5 C -0.18 -1.81 9.53 71.98 0.69 -1.13 16 6 C -0.10 -1.44 4.21 30.60 0.13 -1.31 16 7 C -0.13 -1.59 3.96 29.85 0.12 -1.47 16 8 C 0.51 10.51 7.71 87.66 0.68 11.19 16 9 O -0.59 -17.34 15.43 -3.02 -0.05 -17.38 16 10 N -0.61 -11.46 3.01 -818.02 -2.46 -13.92 16 11 C 0.12 2.67 6.60 86.35 0.57 3.24 16 12 C 0.05 1.12 5.52 86.39 0.48 1.60 16 13 N -0.53 -12.19 4.52 -861.55 -3.90 -16.09 16 14 C 0.09 2.57 2.73 46.39 0.13 2.70 16 15 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 16 C -0.10 -2.91 5.03 31.78 0.16 -2.75 16 17 C 0.11 4.30 4.94 86.73 0.43 4.73 16 18 N -0.63 -31.06 3.29 -691.52 -2.27 -33.34 16 19 C -0.32 -19.20 10.43 84.04 0.88 -18.33 16 20 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 21 C -0.08 -4.75 5.43 84.87 0.46 -4.29 16 22 N -0.95 -61.84 13.70 21.65 0.30 -61.54 16 23 Si 1.11 54.15 24.66 68.60 1.69 55.84 16 24 H -0.27 -11.62 6.76 99.48 0.67 -10.95 16 25 H -0.28 -12.49 6.71 99.48 0.67 -11.83 16 26 H -0.31 -15.09 7.11 99.48 0.71 -14.38 16 27 C 0.14 5.73 5.95 86.93 0.52 6.25 16 28 C 0.04 0.56 5.42 86.37 0.47 1.03 16 29 C 0.11 1.40 6.50 86.33 0.56 1.96 16 30 H 0.06 0.25 8.08 -2.39 -0.02 0.23 16 31 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.27 7.87 -2.38 -0.02 0.25 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.56 7.87 -2.39 -0.02 0.54 16 35 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 37 H 0.08 1.20 8.10 -2.39 -0.02 1.18 16 38 H 0.12 0.84 7.66 -2.39 -0.02 0.82 16 39 H 0.11 1.18 7.68 -2.39 -0.02 1.16 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.08 1.99 7.06 -2.39 -0.02 1.97 16 42 H 0.08 2.05 7.05 -2.38 -0.02 2.03 16 43 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.10 2.15 7.96 -2.38 -0.02 2.13 16 45 H 0.09 2.37 8.11 -2.39 -0.02 2.35 16 46 H 0.03 1.18 7.83 -2.38 -0.02 1.16 16 47 H 0.03 1.10 3.76 -2.39 -0.01 1.09 16 48 H 0.25 16.18 8.73 -92.71 -0.81 15.37 16 49 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.03 1.06 7.87 -2.39 -0.02 1.04 16 51 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.11 1.38 6.64 -2.39 -0.02 1.37 16 53 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 54 H 0.12 0.70 6.02 -2.39 -0.01 0.69 16 Total: -1.00 -78.70 408.09 0.14 -78.56 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.74 Total: 8.88 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 7.56 Total: 5.84 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -8.34 Total: -124.89 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -1.52 Total: -24.23 kcal Atomic # 14 Polarization: 54.15 SS G_CDS: 1.69 Total: 55.84 kcal Total: -78.70 0.14 -78.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484023589.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.765 kcal (2) G-P(sol) polarization free energy of solvation -78.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds