Wall clock time and date at job start Sat Apr 11 2020 05:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47564 * 2 1 4 4 C 1.50706 * 109.46556 * 119.99897 * 2 1 3 5 5 O 1.21277 * 120.00203 * 335.34280 * 4 2 1 6 6 N 1.34778 * 119.99682 * 155.34106 * 4 2 1 7 7 C 1.46928 * 120.63098 * 175.30669 * 6 4 2 8 8 C 1.53187 * 108.77919 * 233.63394 * 7 6 4 9 9 C 1.53037 * 109.31073 * 305.36528 * 8 7 6 10 10 C 1.50706 * 109.46075 * 181.38501 * 9 8 7 11 11 O 1.21279 * 120.00009 * 359.97438 * 10 9 8 12 12 N 1.34784 * 120.00120 * 179.97438 * 10 9 8 13 13 C 1.46495 * 119.99910 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47216 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47502 * 180.02562 * 14 13 12 16 16 H 1.09005 * 109.47145 * 305.00423 * 15 14 13 17 17 C 1.52999 * 109.47396 * 185.00229 * 15 14 13 18 18 N 1.46500 * 109.46858 * 64.99839 * 15 14 13 19 19 C 1.36942 * 120.00174 * 204.99983 * 18 15 14 20 20 H 1.08007 * 119.99695 * 0.02562 * 19 18 15 21 21 C 1.38814 * 120.00044 * 180.02562 * 19 18 15 22 22 N 1.31612 * 120.00133 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99759 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47256 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46914 * 119.99953 * 23 21 19 26 26 H 1.48494 * 109.47228 * 239.99689 * 23 21 19 27 27 C 1.53036 * 109.52998 * 61.37106 * 9 8 7 28 28 C 1.46924 * 120.63261 * 355.33539 * 6 4 2 29 29 H 1.08994 * 109.47369 * 300.00145 * 1 2 3 30 30 H 1.09006 * 109.46427 * 60.00058 * 1 2 3 31 31 H 1.08997 * 109.47320 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47475 * 239.99465 * 2 1 3 33 33 H 1.09004 * 109.46651 * 64.98179 * 3 2 1 34 34 H 1.08992 * 109.47266 * 184.97900 * 3 2 1 35 35 H 1.09000 * 109.46847 * 304.98187 * 3 2 1 36 36 H 1.09005 * 109.58389 * 113.84668 * 7 6 4 37 37 H 1.09001 * 109.70124 * 353.49248 * 7 6 4 38 38 H 1.08999 * 109.49866 * 185.41492 * 8 7 6 39 39 H 1.09000 * 109.52660 * 65.32948 * 8 7 6 40 40 H 1.09003 * 109.46165 * 301.35836 * 9 8 7 41 41 H 0.96995 * 119.99710 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.47273 * 300.00519 * 13 12 10 43 43 H 1.09002 * 109.47189 * 60.00174 * 13 12 10 44 44 H 1.09000 * 109.47303 * 300.00353 * 14 13 12 45 45 H 1.09007 * 109.46671 * 60.00241 * 14 13 12 46 46 H 1.08992 * 109.46875 * 299.99679 * 17 15 14 47 47 H 1.08991 * 109.47100 * 60.00358 * 17 15 14 48 48 H 1.09004 * 109.46832 * 180.02562 * 17 15 14 49 49 H 0.96998 * 120.00305 * 25.01104 * 18 15 14 50 50 H 0.96996 * 120.00179 * 179.97438 * 22 21 19 51 51 H 1.09009 * 109.49775 * 58.58077 * 27 9 8 52 52 H 1.09000 * 109.50058 * 178.67026 * 27 9 8 53 53 H 1.09001 * 109.58728 * 246.15754 * 28 6 4 54 54 H 1.09003 * 109.58512 * 6.43650 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 8 1.3344 -0.7759 2.2203 6 7 3.2569 -1.2731 1.2311 7 6 3.8017 -1.8792 2.4537 8 6 5.1752 -1.2638 2.7394 9 6 6.0679 -1.4241 1.5068 10 6 7.4310 -0.8501 1.7960 11 8 7.6652 -0.3607 2.8806 12 7 8.3898 -0.8806 0.8492 13 6 9.7147 -0.3221 1.1302 14 6 10.6075 -0.4823 -0.1019 15 6 11.9913 0.1004 0.1917 16 1 11.8877 1.1340 0.5220 17 6 12.8442 0.0537 -1.0777 18 7 12.6389 -0.6860 1.2445 19 6 13.6045 -0.1151 2.0299 20 1 13.8884 0.9152 1.8734 21 6 14.2185 -0.8604 3.0271 22 7 13.8730 -2.1161 3.2174 23 14 15.5362 -0.0817 4.0979 24 1 15.7400 1.3298 3.6842 25 1 15.1075 -0.1234 5.5191 26 1 16.8080 -0.8323 3.9423 27 6 5.4432 -0.6825 0.3228 28 6 4.0729 -1.2915 0.0094 29 1 -0.3634 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.7515 1.9299 0.9313 34 1 3.1264 1.4437 -0.0892 35 1 1.6058 1.9814 -0.8420 36 1 3.9055 -2.9551 2.3131 37 1 3.1321 -1.6830 3.2910 38 1 5.6323 -1.7724 3.5882 39 1 5.0591 -0.2046 2.9693 40 1 6.1637 -2.4821 1.2628 41 1 8.2024 -1.2716 -0.0184 42 1 9.6188 0.7360 1.3739 43 1 10.1602 -0.8501 1.9733 44 1 10.7034 -1.5402 -0.3460 45 1 10.1617 0.0461 -0.9447 46 1 12.9478 -0.9798 -1.4078 47 1 12.3624 0.6388 -1.8608 48 1 13.8303 0.4684 -0.8682 49 1 12.3839 -1.6113 1.3851 50 1 14.3022 -2.6370 3.9139 51 1 5.3241 0.3712 0.5753 52 1 6.0911 -0.7771 -0.5487 53 1 4.1988 -2.3195 -0.3305 54 1 3.5802 -0.7074 -0.7679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484996441.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:12 Heat of formation + Delta-G solvation = -111.256641 kcal Electronic energy + Delta-G solvation = -30008.247035 eV Core-core repulsion = 25978.178988 eV Total energy + Delta-G solvation = -4030.068047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.65395 -40.71814 -38.42218 -37.93475 -35.85324 -35.56530 -34.26380 -33.80030 -32.10181 -31.00183 -29.62665 -28.06689 -27.33768 -25.85556 -24.95057 -23.99874 -23.59665 -22.18164 -21.54728 -20.81938 -19.63314 -19.28650 -18.67299 -17.86690 -17.09909 -16.92903 -16.71499 -16.47772 -16.23782 -15.76366 -15.51774 -15.35933 -15.16442 -15.04907 -14.81381 -14.43228 -14.33903 -14.13023 -13.84475 -13.61724 -13.53504 -13.34803 -13.22576 -13.12647 -13.00942 -12.86498 -12.79501 -12.62237 -12.28630 -12.24591 -12.21201 -12.09596 -12.05538 -11.99254 -11.74108 -11.65727 -11.60857 -11.57326 -10.97499 -10.81329 -10.62509 -10.05881 -9.69037 -8.97220 -7.93518 -5.19585 1.44568 1.46169 1.54961 1.58681 1.66251 1.99145 2.23364 2.56235 3.40994 3.44135 3.61760 3.69379 3.76916 3.93774 3.94541 4.02740 4.04245 4.09291 4.19544 4.27204 4.28259 4.38195 4.41621 4.48517 4.67054 4.68382 4.70364 4.74900 4.77927 4.80409 4.81283 4.87765 4.90956 4.92402 4.98170 5.05437 5.07508 5.10535 5.13628 5.23548 5.26421 5.32664 5.34556 5.42249 5.50433 5.53503 5.54689 5.63999 6.30176 6.40038 6.63007 7.16029 7.33722 7.36077 8.15014 8.35420 9.30162 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020836 B = 0.001929 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.477882 B =14508.576733 C =15240.112659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.509 3.491 5 O -0.592 6.592 6 N -0.612 5.612 7 C 0.117 3.883 8 C -0.109 4.109 9 C -0.095 4.095 10 C 0.506 3.494 11 O -0.596 6.596 12 N -0.709 5.709 13 C 0.132 3.868 14 C -0.113 4.113 15 C 0.162 3.838 16 H 0.040 0.960 17 C -0.153 4.153 18 N -0.735 5.735 19 C -0.230 4.230 20 H 0.074 0.926 21 C -0.080 4.080 22 N -0.969 5.969 23 Si 0.965 3.035 24 H -0.266 1.266 25 H -0.300 1.300 26 H -0.293 1.293 27 C -0.121 4.121 28 C 0.103 3.897 29 H 0.041 0.959 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.127 0.873 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.129 0.871 41 H 0.418 0.582 42 H 0.046 0.954 43 H 0.031 0.969 44 H 0.073 0.927 45 H 0.108 0.892 46 H 0.045 0.955 47 H 0.077 0.923 48 H 0.030 0.970 49 H 0.372 0.628 50 H 0.248 0.752 51 H 0.060 0.940 52 H 0.116 0.884 53 H 0.102 0.898 54 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.277 1.634 -18.079 31.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 C -0.198 4.198 4 C 0.299 3.701 5 O -0.473 6.473 6 N -0.344 5.344 7 C -0.006 4.006 8 C -0.148 4.148 9 C -0.117 4.117 10 C 0.293 3.707 11 O -0.476 6.476 12 N -0.361 5.361 13 C 0.008 3.992 14 C -0.152 4.152 15 C 0.053 3.947 16 H 0.058 0.942 17 C -0.213 4.213 18 N -0.375 5.375 19 C -0.362 4.362 20 H 0.091 0.909 21 C -0.272 4.272 22 N -0.621 5.621 23 Si 0.795 3.205 24 H -0.190 1.190 25 H -0.227 1.227 26 H -0.220 1.220 27 C -0.159 4.159 28 C -0.018 4.018 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.145 0.855 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.146 0.854 41 H 0.256 0.744 42 H 0.065 0.935 43 H 0.049 0.951 44 H 0.092 0.908 45 H 0.127 0.873 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.049 0.951 49 H 0.204 0.796 50 H 0.057 0.943 51 H 0.079 0.921 52 H 0.134 0.866 53 H 0.120 0.880 54 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -26.341 2.103 -16.759 31.291 hybrid contribution 1.152 -0.239 1.460 1.875 sum -25.189 1.864 -15.299 29.530 Atomic orbital electron populations 1.21664 0.92807 1.02199 1.02589 1.21425 0.98036 0.97806 0.95879 1.21769 1.01973 0.93218 1.02860 1.21466 0.80728 0.77509 0.90360 1.90665 1.57388 1.61350 1.37871 1.48319 1.16427 1.57259 1.12405 1.21513 0.93328 0.97947 0.87834 1.21618 0.94522 1.01157 0.97459 1.21342 0.89351 1.03100 0.97865 1.21376 0.87544 0.78275 0.83480 1.90729 1.82956 1.47730 1.26231 1.45876 1.11539 1.61277 1.17441 1.21060 0.82213 0.97427 0.98511 1.21898 0.93879 1.02645 0.96754 1.20489 0.91157 0.94467 0.88564 0.94201 1.22256 0.99784 1.01174 0.98037 1.42656 1.44753 1.12366 1.37771 1.19636 1.11669 0.95790 1.09155 0.90853 1.25480 1.03251 0.96758 1.01709 1.69801 1.47124 1.08913 1.36225 0.85184 0.78952 0.78081 0.78288 1.19045 1.22742 1.22033 1.21974 0.97245 0.99476 0.97248 1.22158 0.89881 1.04007 0.85795 0.93934 0.89337 0.92980 0.85493 0.94300 0.91292 0.88929 0.89173 0.91122 0.91393 0.93448 0.85367 0.74377 0.93540 0.95069 0.90831 0.87335 0.93542 0.90437 0.95078 0.79639 0.94329 0.92085 0.86588 0.88038 0.86345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.72 71.98 0.63 -0.93 16 2 C -0.11 -1.13 2.42 -11.54 -0.03 -1.16 16 3 C -0.14 -1.29 9.09 71.98 0.65 -0.63 16 4 C 0.51 9.42 6.81 87.66 0.60 10.01 16 5 O -0.59 -16.84 15.53 -3.02 -0.05 -16.89 16 6 N -0.61 -8.75 2.97 -818.90 -2.43 -11.18 16 7 C 0.12 2.03 6.41 86.36 0.55 2.58 16 8 C -0.11 -2.24 4.65 30.67 0.14 -2.09 16 9 C -0.10 -1.50 2.49 -11.51 -0.03 -1.53 16 10 C 0.51 13.31 7.15 87.66 0.63 13.94 16 11 O -0.60 -23.37 15.98 -3.03 -0.05 -23.42 16 12 N -0.71 -15.77 5.44 -463.06 -2.52 -18.29 16 13 C 0.13 4.14 5.56 86.38 0.48 4.62 16 14 C -0.11 -2.96 4.87 30.59 0.15 -2.81 16 15 C 0.16 5.78 2.89 44.99 0.13 5.91 16 16 H 0.04 1.50 8.08 -2.38 -0.02 1.48 16 17 C -0.15 -4.76 9.49 71.98 0.68 -4.07 16 18 N -0.73 -35.76 4.57 -322.93 -1.48 -37.24 16 19 C -0.23 -12.77 9.93 84.03 0.83 -11.93 16 20 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 21 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 22 N -0.97 -60.22 13.06 21.65 0.28 -59.94 16 23 Si 0.96 47.37 29.55 68.60 2.03 49.40 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 25 H -0.30 -14.97 7.11 99.48 0.71 -14.27 16 26 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 27 C -0.12 -1.02 5.27 30.67 0.16 -0.86 16 28 C 0.10 0.57 6.25 86.36 0.54 1.11 16 29 H 0.04 0.70 7.87 -2.39 -0.02 0.68 16 30 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.13 0.43 6.29 -2.39 -0.02 0.42 16 33 H 0.04 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.07 0.53 7.84 -2.39 -0.02 0.52 16 35 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.07 1.60 7.04 -2.39 -0.02 1.58 16 38 H 0.07 1.62 8.07 -2.39 -0.02 1.60 16 39 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 40 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.42 5.28 7.87 -92.71 -0.73 4.55 16 42 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.03 1.32 7.75 -2.39 -0.02 1.30 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.11 1.91 8.14 -2.38 -0.02 1.89 16 46 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 49 H 0.37 19.58 7.80 -92.71 -0.72 18.86 16 50 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 51 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 52 H 0.12 0.28 7.53 -2.39 -0.02 0.27 16 53 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 54 H 0.12 0.10 5.14 -2.39 -0.01 0.08 16 Total: -1.00 -85.05 425.45 1.80 -83.25 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -0.57 Total: 26.37 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 6.59 Total: 7.95 kcal Atomic # 7 Polarization: -120.51 SS G_CDS: -6.15 Total: -126.65 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.10 Total: -40.31 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -85.05 1.80 -83.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484996441.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.009 kcal (2) G-P(sol) polarization free energy of solvation -85.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds