Wall clock time and date at job start Sat Apr 11 2020 05:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47483 * 2 1 4 4 C 1.53005 * 109.46621 * 240.00109 * 2 1 3 5 5 C 1.53006 * 109.46594 * 175.00658 * 4 2 1 6 6 C 1.53005 * 109.46594 * 179.97438 * 5 4 2 7 7 N 1.46501 * 109.46802 * 179.97438 * 6 5 4 8 8 C 1.36934 * 120.00073 * 179.97438 * 7 6 5 9 9 H 1.08000 * 119.99715 * 0.02562 * 8 7 6 10 10 C 1.38811 * 120.00515 * 180.02562 * 8 7 6 11 11 N 1.31612 * 120.00503 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 119.99445 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47421 * 89.99979 * 12 10 8 14 14 H 1.48500 * 109.46850 * 209.99794 * 12 10 8 15 15 H 1.48505 * 109.47325 * 329.99523 * 12 10 8 16 16 N 1.46502 * 109.46771 * 120.00712 * 2 1 3 17 17 C 1.34776 * 119.99478 * 274.98897 * 16 2 1 18 18 O 1.21283 * 120.00574 * 0.02562 * 17 16 2 19 19 C 1.50705 * 119.99925 * 180.02562 * 17 16 2 20 20 H 1.09000 * 109.46786 * 300.00507 * 19 17 16 21 21 C 1.53000 * 109.47053 * 60.00532 * 19 17 16 22 22 N 1.46498 * 109.47273 * 180.02562 * 19 17 16 23 23 C 1.34775 * 120.00003 * 154.99981 * 22 19 17 24 24 O 1.21281 * 119.99955 * 0.02562 * 23 22 19 25 25 C 1.50704 * 119.99857 * 179.97438 * 23 22 19 26 26 C 1.55238 * 110.46892 * 294.81226 * 25 23 22 27 27 C 1.54894 * 102.58338 * 203.39217 * 26 25 23 28 28 C 1.54266 * 104.31305 * 37.93170 * 27 26 25 29 29 C 1.53869 * 106.60031 * 336.32486 * 28 27 26 30 30 H 1.09007 * 109.47151 * 300.00034 * 1 2 3 31 31 H 1.09003 * 109.46895 * 59.99421 * 1 2 3 32 32 H 1.08997 * 109.47483 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47270 * 294.99932 * 4 2 1 34 34 H 1.08992 * 109.47236 * 55.00426 * 4 2 1 35 35 H 1.08998 * 109.46719 * 299.99611 * 5 4 2 36 36 H 1.08992 * 109.47518 * 59.99941 * 5 4 2 37 37 H 1.08998 * 109.47270 * 299.99274 * 6 5 4 38 38 H 1.09000 * 109.47477 * 59.99993 * 6 5 4 39 39 H 0.96998 * 119.99719 * 0.02562 * 7 6 5 40 40 H 0.96998 * 120.00422 * 180.02562 * 11 10 8 41 41 H 0.96994 * 120.00366 * 94.99831 * 16 2 1 42 42 H 1.08990 * 109.47159 * 179.97438 * 21 19 17 43 43 H 1.09005 * 109.46804 * 299.99947 * 21 19 17 44 44 H 1.09001 * 109.46730 * 59.99606 * 21 19 17 45 45 H 0.97003 * 119.99782 * 335.00534 * 22 19 17 46 46 H 1.09007 * 110.43017 * 57.46396 * 25 23 22 47 47 H 1.08996 * 110.89448 * 85.10781 * 26 25 23 48 48 H 1.08993 * 110.76342 * 321.62447 * 26 25 23 49 49 H 1.09002 * 110.48891 * 279.18596 * 27 26 25 50 50 H 1.08998 * 110.48494 * 156.67683 * 27 26 25 51 51 H 1.09001 * 110.03084 * 95.60669 * 28 27 26 52 52 H 1.08996 * 110.03108 * 216.98559 * 28 27 26 53 53 H 1.08999 * 110.04012 * 119.28327 * 29 28 27 54 54 H 1.09006 * 110.02998 * 240.67078 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 6 4.0747 -1.3353 -2.5627 7 7 5.5348 -1.2315 -2.6247 8 6 6.2186 -1.8065 -3.6624 9 1 5.6815 -2.3362 -4.4353 10 6 7.6020 -1.7087 -3.7209 11 7 8.2592 -2.2610 -4.7186 12 14 8.5309 -0.7932 -2.3836 13 1 8.8920 -1.7379 -1.2962 14 1 9.7668 -0.2014 -2.9558 15 1 7.6724 0.2875 -1.8356 16 7 2.0183 -0.6908 1.1961 17 6 2.1471 -0.0184 2.3571 18 8 1.8584 1.1583 2.4117 19 6 2.6499 -0.7288 3.5874 20 1 1.9776 -1.5510 3.8324 21 6 4.0526 -1.2788 3.3213 22 7 2.6987 0.2124 4.7091 23 6 2.6198 -0.2433 5.9750 24 8 2.5089 -1.4325 6.1856 25 6 2.6706 0.7248 7.1288 26 6 4.0563 1.4216 7.1922 27 6 4.1485 1.8551 8.6764 28 6 3.5026 0.6902 9.4547 29 6 2.5630 -0.0285 8.4707 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7515 -1.7715 -1.2057 34 1 1.6053 -0.2617 -2.1370 35 1 3.8532 0.4368 -1.3573 36 1 3.9994 -1.0730 -0.4261 37 1 3.7864 -2.3855 -2.5186 38 1 3.6402 -0.8761 -3.4506 39 1 6.0171 -0.7561 -1.9302 40 1 9.2259 -2.1930 -4.7593 41 1 2.2489 -1.6319 1.1525 42 1 4.4164 -1.7922 4.2112 43 1 4.0159 -1.9792 2.4868 44 1 4.7248 -0.4565 3.0762 45 1 2.7877 1.1635 4.5406 46 1 1.8738 1.4635 7.0410 47 1 4.0854 2.2898 6.5338 48 1 4.8531 0.7204 6.9443 49 1 3.5919 2.7779 8.8397 50 1 5.1897 1.9812 8.9730 51 1 4.2727 0.0029 9.8051 52 1 2.9341 1.0762 10.3008 53 1 2.8769 -1.0645 8.3435 54 1 1.5378 0.0082 8.8392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485725598.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:15 Heat of formation + Delta-G solvation = -118.583656 kcal Electronic energy + Delta-G solvation = -29733.240050 eV Core-core repulsion = 25702.854281 eV Total energy + Delta-G solvation = -4030.385770 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66591 -40.66786 -38.31848 -37.94186 -36.69273 -36.04256 -34.29087 -33.18204 -31.97409 -30.86637 -29.73113 -29.51214 -27.38380 -25.85435 -24.44471 -23.27279 -22.50906 -21.86248 -21.47142 -21.26403 -20.76335 -19.62243 -18.97740 -17.88270 -17.59683 -16.95486 -16.61914 -16.50913 -16.24896 -15.88955 -15.84008 -15.69305 -15.38512 -15.00685 -14.80712 -14.56316 -14.35350 -14.27534 -13.98855 -13.72400 -13.57298 -13.51163 -13.39320 -13.07699 -12.89376 -12.84131 -12.71660 -12.48305 -12.21563 -12.11611 -12.08258 -12.03588 -11.99923 -11.87569 -11.72857 -11.71596 -11.54588 -11.31038 -11.00330 -10.97085 -10.84555 -10.28882 -10.11839 -9.29796 -8.03896 -5.37274 1.36597 1.40234 1.44340 1.47745 1.54068 1.78480 2.37580 2.47268 3.27464 3.44347 3.49216 3.56392 3.62019 3.79136 3.88405 3.97500 4.02770 4.11307 4.18087 4.21955 4.39855 4.45553 4.50489 4.55373 4.56592 4.59706 4.60504 4.64861 4.72764 4.77991 4.81937 4.86872 4.89994 4.93871 4.99549 5.08688 5.12207 5.12424 5.19030 5.24756 5.27966 5.30966 5.34793 5.39323 5.43512 5.46989 5.54373 5.75037 6.20594 6.42056 6.44024 7.07436 7.08954 7.13998 7.84726 8.02804 9.17609 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011156 B = 0.002250 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.158094 B =12443.033846 C =14281.218367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.117 4.117 6 C 0.151 3.849 7 N -0.762 5.762 8 C -0.237 4.237 9 H 0.056 0.944 10 C -0.067 4.067 11 N -0.984 5.984 12 Si 0.958 3.042 13 H -0.276 1.276 14 H -0.296 1.296 15 H -0.253 1.253 16 N -0.706 5.706 17 C 0.516 3.484 18 O -0.569 6.569 19 C 0.127 3.873 20 H 0.113 0.887 21 C -0.156 4.156 22 N -0.708 5.708 23 C 0.522 3.478 24 O -0.576 6.576 25 C -0.111 4.111 26 C -0.113 4.113 27 C -0.121 4.121 28 C -0.123 4.123 29 C -0.114 4.114 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.029 0.971 38 H 0.022 0.978 39 H 0.365 0.635 40 H 0.258 0.742 41 H 0.414 0.586 42 H 0.065 0.935 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.414 0.586 46 H 0.119 0.881 47 H 0.087 0.913 48 H 0.061 0.939 49 H 0.081 0.919 50 H 0.074 0.926 51 H 0.061 0.939 52 H 0.076 0.924 53 H 0.060 0.940 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.749 8.591 27.835 33.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.091 0.909 4 C -0.151 4.151 5 C -0.155 4.155 6 C 0.025 3.975 7 N -0.407 5.407 8 C -0.368 4.368 9 H 0.074 0.926 10 C -0.259 4.259 11 N -0.634 5.634 12 Si 0.785 3.215 13 H -0.202 1.202 14 H -0.223 1.223 15 H -0.177 1.177 16 N -0.358 5.358 17 C 0.302 3.698 18 O -0.448 6.448 19 C 0.018 3.982 20 H 0.131 0.869 21 C -0.215 4.215 22 N -0.361 5.361 23 C 0.310 3.690 24 O -0.456 6.456 25 C -0.132 4.132 26 C -0.150 4.150 27 C -0.158 4.158 28 C -0.161 4.161 29 C -0.152 4.152 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.040 0.960 39 H 0.198 0.802 40 H 0.067 0.933 41 H 0.251 0.749 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.081 0.919 45 H 0.252 0.748 46 H 0.137 0.863 47 H 0.106 0.894 48 H 0.080 0.920 49 H 0.099 0.901 50 H 0.092 0.908 51 H 0.080 0.920 52 H 0.095 0.905 53 H 0.078 0.922 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.051 8.463 27.790 33.684 hybrid contribution 1.094 0.130 -0.049 1.103 sum -15.957 8.593 27.741 33.136 Atomic orbital electron populations 1.22111 0.94087 1.02934 1.02349 1.20998 0.94567 0.96795 0.83505 0.90938 1.21764 0.93799 1.02313 0.97192 1.21663 0.96482 1.00181 0.97181 1.20861 0.82038 0.97910 0.96713 1.42776 1.03809 1.66459 1.27683 1.19069 0.90175 1.26169 1.01345 0.92605 1.25564 0.97360 1.02272 1.00685 1.69885 1.07488 1.51590 1.34483 0.85367 0.77989 0.79155 0.79006 1.20177 1.22315 1.17747 1.46016 1.66071 1.14809 1.08953 1.20667 0.76996 0.86971 0.85211 1.90680 1.51732 1.17091 1.85307 1.20764 0.99754 0.92829 0.84827 0.86889 1.22113 0.93998 1.01885 1.03488 1.45801 1.74265 1.11512 1.04497 1.21077 0.74131 0.89501 0.84271 1.90672 1.51033 1.18586 1.85278 1.22302 1.01529 0.97116 0.92228 1.22570 0.93828 1.00046 0.98605 1.22361 1.01603 0.98481 0.93364 1.22148 0.98469 0.97359 0.98134 1.22070 1.00754 0.99553 0.92783 0.93736 0.90344 0.91148 0.89470 0.89161 0.92634 0.91384 0.95331 0.96040 0.80206 0.93331 0.74907 0.91572 0.89293 0.91873 0.74796 0.86306 0.89390 0.92045 0.90074 0.90759 0.92007 0.90482 0.92168 0.91008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 71.98 0.68 -1.67 16 2 C 0.15 2.51 2.57 44.99 0.12 2.62 16 3 H 0.07 1.55 7.58 -2.39 -0.02 1.54 16 4 C -0.11 -1.96 4.75 30.60 0.15 -1.81 16 5 C -0.12 -2.93 5.22 30.60 0.16 -2.77 16 6 C 0.15 5.31 6.26 86.38 0.54 5.85 16 7 N -0.76 -35.08 5.41 -343.44 -1.86 -36.93 16 8 C -0.24 -13.55 10.47 84.03 0.88 -12.67 16 9 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 10 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 11 N -0.98 -63.30 13.97 21.65 0.30 -63.00 16 12 Si 0.96 45.39 27.74 68.60 1.90 47.29 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 15 H -0.25 -10.81 6.52 99.48 0.65 -10.16 16 16 N -0.71 -11.37 4.42 -442.52 -1.96 -13.32 16 17 C 0.52 10.11 7.19 87.66 0.63 10.74 16 18 O -0.57 -14.55 15.50 -3.04 -0.05 -14.60 16 19 C 0.13 2.23 2.98 44.25 0.13 2.36 16 20 H 0.11 2.03 7.58 -2.39 -0.02 2.01 16 21 C -0.16 -2.59 9.38 71.98 0.68 -1.91 16 22 N -0.71 -12.41 4.94 -446.09 -2.20 -14.61 16 23 C 0.52 10.11 7.10 87.66 0.62 10.73 16 24 O -0.58 -15.21 15.08 -3.03 -0.05 -15.26 16 25 C -0.11 -1.49 3.26 -10.34 -0.03 -1.52 16 26 C -0.11 -1.23 6.34 32.01 0.20 -1.03 16 27 C -0.12 -1.06 6.82 31.67 0.22 -0.85 16 28 C -0.12 -1.29 6.80 31.32 0.21 -1.08 16 29 C -0.11 -1.62 6.19 31.32 0.19 -1.42 16 30 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.61 7.75 -2.39 -0.02 1.59 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.36 16.00 5.53 -92.71 -0.51 15.49 16 40 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 41 H 0.41 5.00 8.02 -92.71 -0.74 4.25 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.09 1.21 7.57 -2.38 -0.02 1.19 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.41 6.64 7.79 -92.71 -0.72 5.92 16 46 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 47 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.06 0.83 8.05 -2.39 -0.02 0.81 16 49 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 51 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 53 H 0.06 1.17 6.85 -2.39 -0.02 1.15 16 54 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -76.27 429.60 0.79 -75.48 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: -1.15 Total: 32.90 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 5.84 Total: 2.06 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -5.72 Total: -127.87 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.09 Total: -29.86 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.90 Total: 47.29 kcal Total: -76.27 0.79 -75.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485725598.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.104 kcal (2) G-P(sol) polarization free energy of solvation -76.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds