Wall clock time and date at job start Sat Apr 11 2020 05:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47247 * 2 1 4 4 C 1.53001 * 109.46813 * 240.00430 * 2 1 3 5 5 C 1.50697 * 109.47121 * 175.00229 * 4 2 1 6 6 O 1.21278 * 119.99918 * 359.97438 * 5 4 2 7 7 N 1.34774 * 120.00141 * 180.02562 * 5 4 2 8 8 C 1.46503 * 120.00087 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47067 * 179.97438 * 8 7 5 10 10 C 1.53004 * 109.47033 * 179.97438 * 9 8 7 11 11 N 1.46497 * 109.47107 * 179.97438 * 10 9 8 12 12 C 1.46497 * 120.00487 * 269.99939 * 11 10 9 13 13 C 1.36942 * 119.99671 * 89.99811 * 11 10 9 14 14 H 1.08004 * 119.99917 * 22.34840 * 13 11 10 15 15 C 1.38812 * 120.00155 * 202.34606 * 13 11 10 16 16 N 1.31618 * 119.99583 * 11.34441 * 15 13 11 17 17 Si 1.86797 * 120.00184 * 191.34727 * 15 13 11 18 18 H 1.48495 * 109.47188 * 90.00119 * 17 15 13 19 19 H 1.48503 * 109.46851 * 209.99754 * 17 15 13 20 20 H 1.48494 * 109.46874 * 329.99890 * 17 15 13 21 21 N 1.46496 * 109.47091 * 120.00524 * 2 1 3 22 22 C 1.34776 * 119.99492 * 274.99784 * 21 2 1 23 23 O 1.21274 * 120.00653 * 359.97438 * 22 21 2 24 24 C 1.50704 * 119.99676 * 180.02562 * 22 21 2 25 25 C 1.55233 * 110.57993 * 294.87165 * 24 22 21 26 26 C 1.54895 * 102.58968 * 203.33923 * 25 24 22 27 27 C 1.54268 * 104.31183 * 37.93215 * 26 25 24 28 28 C 1.53874 * 106.59743 * 336.32427 * 27 26 25 29 29 H 1.09000 * 109.46942 * 299.99761 * 1 2 3 30 30 H 1.09004 * 109.47346 * 59.99541 * 1 2 3 31 31 H 1.09001 * 109.47247 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46874 * 295.00094 * 4 2 1 33 33 H 1.08999 * 109.47122 * 54.99707 * 4 2 1 34 34 H 0.97002 * 119.99949 * 359.97438 * 7 5 4 35 35 H 1.09005 * 109.46684 * 299.99352 * 8 7 5 36 36 H 1.08993 * 109.47286 * 59.99161 * 8 7 5 37 37 H 1.09005 * 109.47077 * 299.99402 * 9 8 7 38 38 H 1.08999 * 109.47122 * 59.99479 * 9 8 7 39 39 H 1.08997 * 109.46583 * 299.99934 * 10 9 8 40 40 H 1.08997 * 109.46777 * 59.99695 * 10 9 8 41 41 H 1.09003 * 109.46931 * 94.20548 * 12 11 10 42 42 H 1.08994 * 109.47630 * 214.21049 * 12 11 10 43 43 H 1.09001 * 109.46747 * 334.21470 * 12 11 10 44 44 H 0.97007 * 120.00384 * 180.02562 * 16 15 13 45 45 H 0.96991 * 120.00400 * 94.99967 * 21 2 1 46 46 H 1.09005 * 110.43515 * 57.45656 * 24 22 21 47 47 H 1.09004 * 110.89826 * 85.05115 * 25 24 22 48 48 H 1.08998 * 110.77034 * 321.56837 * 25 24 22 49 49 H 1.09002 * 110.48196 * 279.19061 * 26 25 24 50 50 H 1.08993 * 110.48786 * 156.67394 * 26 25 24 51 51 H 1.08990 * 110.03464 * 95.60788 * 27 26 25 52 52 H 1.09000 * 110.03033 * 216.99361 * 27 26 25 53 53 H 1.09005 * 110.03275 * 119.28353 * 28 27 26 54 54 H 1.08997 * 110.03450 * 240.66468 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 8 4.1449 -0.0205 -0.4446 7 7 4.2148 -1.1796 -2.3350 8 6 5.6748 -1.0758 -2.3970 9 6 6.1847 -1.7971 -3.6463 10 6 7.7095 -1.6881 -3.7114 11 7 8.1978 -2.3793 -4.9072 12 6 8.5472 -3.8004 -4.8406 13 6 8.3276 -1.6968 -6.0873 14 1 8.4272 -0.6214 -6.0811 15 6 8.3313 -2.3872 -7.2916 16 7 7.9895 -3.6579 -7.3226 17 14 8.8214 -1.5130 -8.8679 18 1 10.2861 -1.6457 -9.0727 19 1 8.1038 -2.1233 -10.0160 20 1 8.4637 -0.0752 -8.7683 21 7 2.0184 -0.6907 1.1961 22 6 2.1471 -0.0183 2.3570 23 8 1.8591 1.1585 2.4115 24 6 2.6500 -0.7287 3.5873 25 6 1.6442 -1.8232 4.0349 26 6 1.9766 -1.9927 5.5382 27 6 2.2830 -0.5612 6.0248 28 6 2.7111 0.2424 4.7845 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7515 -1.7714 -1.2057 33 1 1.6053 -0.2616 -2.1370 34 1 3.7324 -1.6547 -3.0296 35 1 5.9628 -0.0254 -2.4405 36 1 6.1097 -1.5353 -1.5095 37 1 5.8967 -2.8475 -3.6023 38 1 5.7497 -1.3379 -4.5339 39 1 7.9970 -0.6377 -3.7554 40 1 8.1447 -2.1471 -2.8237 41 1 7.6900 -4.4000 -5.1467 42 1 9.3866 -3.9998 -5.5068 43 1 8.8250 -4.0587 -3.8187 44 1 7.9923 -4.1405 -8.1641 45 1 2.2490 -1.6318 1.1525 46 1 3.6308 -1.1659 3.4002 47 1 1.8161 -2.7538 3.4940 48 1 0.6175 -1.4821 3.9024 49 1 2.8487 -2.6340 5.6661 50 1 1.1207 -2.4028 6.0743 51 1 1.3908 -0.1182 6.4670 52 1 3.0915 -0.5804 6.7556 53 1 2.0266 1.0755 4.6247 54 1 3.7277 0.6142 4.9130 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490286842.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:55 Heat of formation + Delta-G solvation = -104.690072 kcal Electronic energy + Delta-G solvation = -29456.246205 eV Core-core repulsion = 25426.462906 eV Total energy + Delta-G solvation = -4029.783299 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.35625 -40.51560 -38.26255 -37.92031 -36.74655 -36.00914 -33.78270 -32.85929 -31.71020 -29.89377 -29.53868 -29.06760 -27.92823 -26.66050 -24.07125 -23.42526 -22.20632 -22.03412 -21.32312 -21.14497 -20.53916 -18.76622 -18.49182 -17.92615 -17.47980 -17.06005 -16.72966 -16.52006 -16.45677 -15.74698 -15.71826 -15.54049 -15.26981 -14.90261 -14.66453 -14.50460 -14.31505 -14.21929 -13.93176 -13.54168 -13.36093 -13.10579 -12.93318 -12.86281 -12.82971 -12.75254 -12.67416 -12.44298 -12.27124 -12.15647 -12.07392 -12.02391 -11.98772 -11.96784 -11.85365 -11.68419 -11.46142 -11.31152 -10.88480 -10.70322 -10.63567 -10.07071 -9.98233 -8.79527 -7.82535 -5.30266 1.46622 1.48185 1.56295 1.68789 1.73181 2.24655 2.29209 2.51665 3.31768 3.53434 3.63524 3.66418 3.67458 3.80028 3.85218 4.12664 4.22832 4.24390 4.30949 4.44303 4.48045 4.51032 4.52871 4.58918 4.61533 4.63009 4.67425 4.70674 4.79943 4.81031 4.82436 4.89363 4.93534 4.95761 5.08051 5.09538 5.20967 5.27251 5.31001 5.31270 5.33808 5.36164 5.43758 5.47115 5.52910 5.61352 5.64940 5.74373 6.34141 6.58298 6.65021 7.16443 7.31428 7.34705 7.88518 8.31405 9.20875 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019311 B = 0.001750 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.602655 B =15999.459514 C =16687.004789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.054 0.946 4 C -0.140 4.140 5 C 0.502 3.498 6 O -0.581 6.581 7 N -0.720 5.720 8 C 0.134 3.866 9 C -0.127 4.127 10 C 0.150 3.850 11 N -0.620 5.620 12 C 0.177 3.823 13 C -0.261 4.261 14 H 0.069 0.931 15 C -0.053 4.053 16 N -0.938 5.938 17 Si 0.966 3.034 18 H -0.288 1.288 19 H -0.294 1.294 20 H -0.270 1.270 21 N -0.704 5.704 22 C 0.520 3.480 23 O -0.590 6.590 24 C -0.114 4.114 25 C -0.105 4.105 26 C -0.120 4.120 27 C -0.122 4.122 28 C -0.116 4.116 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.413 0.587 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.045 0.955 40 H 0.058 0.942 41 H 0.006 0.994 42 H 0.015 0.985 43 H 0.029 0.971 44 H 0.248 0.752 45 H 0.409 0.591 46 H 0.106 0.894 47 H 0.093 0.907 48 H 0.066 0.934 49 H 0.077 0.923 50 H 0.080 0.920 51 H 0.064 0.936 52 H 0.073 0.927 53 H 0.057 0.943 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.106 -0.316 21.870 28.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.050 3.950 3 H 0.072 0.928 4 C -0.180 4.180 5 C 0.290 3.710 6 O -0.460 6.460 7 N -0.373 5.373 8 C 0.010 3.990 9 C -0.168 4.168 10 C 0.023 3.977 11 N -0.344 5.344 12 C 0.032 3.968 13 C -0.391 4.391 14 H 0.087 0.913 15 C -0.248 4.248 16 N -0.585 5.585 17 Si 0.795 3.205 18 H -0.215 1.215 19 H -0.220 1.220 20 H -0.195 1.195 21 N -0.355 5.355 22 C 0.307 3.693 23 O -0.471 6.471 24 C -0.135 4.135 25 C -0.143 4.143 26 C -0.158 4.158 27 C -0.160 4.160 28 C -0.154 4.154 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.250 0.750 35 H 0.069 0.931 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.024 0.976 42 H 0.034 0.966 43 H 0.048 0.952 44 H 0.057 0.943 45 H 0.245 0.755 46 H 0.124 0.876 47 H 0.112 0.888 48 H 0.084 0.916 49 H 0.096 0.904 50 H 0.098 0.902 51 H 0.083 0.917 52 H 0.091 0.909 53 H 0.076 0.924 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -17.852 0.832 22.367 28.630 hybrid contribution 0.528 -0.006 -1.628 1.712 sum -17.324 0.826 20.738 27.035 Atomic orbital electron populations 1.22102 0.92946 1.03566 1.02511 1.20645 0.94663 0.96314 0.83419 0.92812 1.22090 0.89751 1.05805 1.00329 1.21289 0.91406 0.77618 0.80688 1.90739 1.71474 1.43666 1.40151 1.46083 1.07697 1.56574 1.26905 1.21129 0.80148 0.99834 0.97930 1.22166 0.98885 0.99827 0.95901 1.20890 0.91813 0.96340 0.88653 1.44206 1.75186 1.07876 1.07087 1.20558 0.97301 0.83827 0.95118 1.19528 1.43054 0.91821 0.84712 0.91349 1.25746 1.01293 0.97145 1.00585 1.70218 1.52951 1.09845 1.25444 0.85277 0.77485 0.78233 0.79512 1.21511 1.22038 1.19487 1.45823 1.66565 1.14092 1.08980 1.20930 0.76151 0.86629 0.85543 1.90634 1.52533 1.18127 1.85793 1.22275 1.01595 0.97701 0.91971 1.22537 0.97546 0.97158 0.97062 1.22365 1.02417 0.96330 0.94658 1.22143 1.01543 0.95663 0.96644 1.22060 1.01656 0.98040 0.93669 0.94072 0.89939 0.89989 0.84702 0.84773 0.75035 0.93058 0.91927 0.92390 0.93200 0.93671 0.92333 0.97556 0.96577 0.95223 0.94303 0.75543 0.87608 0.88839 0.91571 0.90385 0.90164 0.91695 0.90868 0.92418 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.48 71.98 0.68 -1.32 16 2 C 0.15 2.76 2.14 44.99 0.10 2.85 16 3 H 0.05 1.44 7.39 -2.39 -0.02 1.42 16 4 C -0.14 -1.75 5.24 29.85 0.16 -1.59 16 5 C 0.50 11.18 7.69 87.66 0.67 11.85 16 6 O -0.58 -18.53 15.35 -3.02 -0.05 -18.58 16 7 N -0.72 -15.58 5.56 -463.06 -2.57 -18.15 16 8 C 0.13 3.68 5.67 86.38 0.49 4.17 16 9 C -0.13 -4.16 5.65 30.60 0.17 -3.99 16 10 C 0.15 5.73 5.71 86.38 0.49 6.23 16 11 N -0.62 -30.36 2.93 -726.95 -2.13 -32.49 16 12 C 0.18 8.56 9.01 127.77 1.15 9.71 16 13 C -0.26 -14.09 9.67 84.03 0.81 -13.27 16 14 H 0.07 3.61 7.85 -2.91 -0.02 3.59 16 15 C -0.05 -2.91 5.13 84.86 0.44 -2.47 16 16 N -0.94 -54.29 10.58 21.65 0.23 -54.06 16 17 Si 0.97 44.51 29.57 68.60 2.03 46.54 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 N -0.70 -12.72 4.21 -442.53 -1.86 -14.58 16 22 C 0.52 12.28 7.10 87.66 0.62 12.90 16 23 O -0.59 -19.33 15.09 -3.01 -0.05 -19.37 16 24 C -0.11 -1.97 3.25 -10.34 -0.03 -2.00 16 25 C -0.11 -1.17 6.34 32.01 0.20 -0.96 16 26 C -0.12 -1.16 6.82 31.67 0.22 -0.95 16 27 C -0.12 -1.58 6.80 31.32 0.21 -1.36 16 28 C -0.12 -2.18 6.18 31.32 0.19 -1.99 16 29 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.13 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.41 6.93 8.47 -92.71 -0.79 6.14 16 35 H 0.05 1.54 8.14 -2.38 -0.02 1.53 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.04 1.72 8.03 -2.39 -0.02 1.70 16 40 H 0.06 2.01 7.86 -2.39 -0.02 1.99 16 41 H 0.01 0.32 7.42 -2.39 -0.02 0.30 16 42 H 0.02 0.83 7.19 -2.39 -0.02 0.81 16 43 H 0.03 1.20 7.84 -2.39 -0.02 1.19 16 44 H 0.25 13.96 8.31 -92.70 -0.77 13.19 16 45 H 0.41 5.15 8.60 -92.72 -0.80 4.35 16 46 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 47 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 48 H 0.07 0.82 8.06 -2.39 -0.02 0.80 16 49 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 53 H 0.06 1.38 6.85 -2.38 -0.02 1.36 16 54 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -76.79 430.65 1.47 -75.31 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -0.71 Total: 17.59 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 6.58 Total: 17.80 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -6.33 Total: -119.29 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.09 Total: -37.95 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -76.79 1.47 -75.31 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490286842.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.376 kcal (2) G-P(sol) polarization free energy of solvation -76.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds