Wall clock time and date at job start Sat Apr 11 2020 05:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47310 * 2 1 4 4 C 1.50697 * 109.47228 * 120.00712 * 2 1 3 5 5 O 1.21279 * 119.99817 * 339.99771 * 4 2 1 6 6 N 1.34781 * 119.99846 * 159.99700 * 4 2 1 7 7 C 1.46921 * 120.63072 * 355.76940 * 6 4 2 8 8 C 1.53198 * 108.89211 * 233.67107 * 7 6 4 9 9 C 1.53035 * 109.31292 * 305.29331 * 8 7 6 10 10 C 1.50703 * 109.46308 * 181.38146 * 9 8 7 11 11 O 1.21277 * 119.99327 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99942 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99517 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.47330 * 325.00078 * 13 12 10 15 15 C 1.53002 * 109.46934 * 85.00262 * 13 12 10 16 16 C 1.53005 * 109.46867 * 205.00055 * 13 12 10 17 17 C 1.52998 * 109.46783 * 65.00186 * 16 13 12 18 18 N 1.46501 * 109.46759 * 179.97438 * 17 16 13 19 19 C 1.36945 * 119.99920 * 179.97438 * 18 17 16 20 20 H 1.07995 * 119.99877 * 0.02562 * 19 18 17 21 21 C 1.38812 * 119.99583 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00451 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99553 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47154 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47363 * 119.99649 * 23 21 19 26 26 H 1.48499 * 109.46745 * 239.99901 * 23 21 19 27 27 C 1.53042 * 109.53643 * 61.36420 * 9 8 7 28 28 C 1.47204 * 120.81110 * 175.90426 * 6 4 2 29 29 H 1.09004 * 109.47167 * 299.99267 * 1 2 3 30 30 H 1.09003 * 109.47499 * 59.99063 * 1 2 3 31 31 H 1.09003 * 109.47525 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47167 * 240.00733 * 2 1 3 33 33 H 1.09008 * 109.46264 * 62.00308 * 3 2 1 34 34 H 1.09002 * 109.47384 * 181.99384 * 3 2 1 35 35 H 1.08995 * 109.47673 * 302.00403 * 3 2 1 36 36 H 1.09001 * 109.58797 * 113.81562 * 7 6 4 37 37 H 1.09001 * 109.58863 * 353.53273 * 7 6 4 38 38 H 1.09003 * 109.49231 * 65.24654 * 8 7 6 39 39 H 1.08998 * 109.49879 * 185.34316 * 8 7 6 40 40 H 1.09001 * 109.46183 * 301.34630 * 9 8 7 41 41 H 0.96990 * 120.00409 * 0.02562 * 12 10 9 42 42 H 1.09006 * 109.46949 * 179.97438 * 15 13 12 43 43 H 1.09000 * 109.47059 * 299.99661 * 15 13 12 44 44 H 1.08993 * 109.47270 * 60.00009 * 15 13 12 45 45 H 1.09002 * 109.46710 * 185.00147 * 16 13 12 46 46 H 1.08990 * 109.46970 * 304.99747 * 16 13 12 47 47 H 1.08990 * 109.47385 * 299.99870 * 17 16 13 48 48 H 1.08999 * 109.47251 * 60.00378 * 17 16 13 49 49 H 0.97001 * 120.00046 * 0.02562 * 18 17 16 50 50 H 0.96994 * 120.00049 * 180.02562 * 22 21 19 51 51 H 1.08996 * 109.49846 * 58.58714 * 27 9 8 52 52 H 1.09003 * 109.49773 * 178.64956 * 27 9 8 53 53 H 1.08998 * 109.53712 * 6.54148 * 28 6 4 54 54 H 1.09002 * 109.67903 * 246.23464 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 1.3039 -0.8499 2.1900 6 7 3.2910 -1.1912 1.2642 7 6 4.1545 -1.1125 0.0781 8 6 4.6904 -2.5122 -0.2391 9 6 5.3817 -3.0826 1.0013 10 6 5.9398 -4.4458 0.6829 11 8 5.7989 -4.9145 -0.4267 12 7 6.5963 -5.1434 1.6309 13 6 7.1393 -6.4684 1.3211 14 1 6.4732 -6.9809 0.6270 15 6 8.5217 -6.3166 0.6833 16 6 7.2591 -7.2845 2.6098 17 6 5.8636 -7.5425 3.1815 18 7 5.9782 -8.3244 4.4151 19 6 4.8517 -8.6778 5.1089 20 1 3.8788 -8.3804 4.7465 21 6 4.9604 -9.4183 6.2780 22 7 6.1461 -9.7811 6.7194 23 14 3.4237 -9.9009 7.2241 24 1 2.2250 -9.3748 6.5229 25 1 3.3385 -11.3811 7.3082 26 1 3.4859 -9.3300 8.5935 27 6 4.3693 -3.2002 2.1430 28 6 3.8298 -1.8084 2.4872 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.7062 1.9458 0.9075 34 1 3.1294 1.4427 -0.0358 35 1 1.6477 1.9667 -0.8714 36 1 4.9879 -0.4386 0.2769 37 1 3.5784 -0.7410 -0.7693 38 1 3.8634 -3.1619 -0.5259 39 1 5.4063 -2.4506 -1.0586 40 1 6.1928 -2.4195 1.3022 41 1 6.7093 -4.7684 2.5182 42 1 8.9259 -7.3024 0.4532 43 1 8.4364 -5.7351 -0.2348 44 1 9.1878 -5.8041 1.3773 45 1 7.7447 -8.2360 2.3934 46 1 7.8529 -6.7306 3.3367 47 1 5.3779 -6.5911 3.3978 48 1 5.2698 -8.0965 2.4545 49 1 6.8521 -8.5912 4.7407 50 1 6.2220 -10.2989 7.5361 51 1 3.5454 -3.8434 1.8338 52 1 4.8566 -3.6289 3.0187 53 1 3.0373 -1.8971 3.2303 54 1 4.6361 -1.1920 2.8848 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497241224.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:01 Heat of formation + Delta-G solvation = -110.877832 kcal Electronic energy + Delta-G solvation = -30387.853744 eV Core-core repulsion = 26357.802123 eV Total energy + Delta-G solvation = -4030.051620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.66717 -40.81277 -38.48511 -37.66970 -36.10769 -35.61062 -34.14818 -33.45897 -32.18360 -31.74369 -29.43110 -28.06954 -27.38297 -25.89453 -24.85689 -24.02921 -23.25301 -22.46003 -21.68933 -21.02541 -19.71361 -19.25754 -18.60579 -17.94849 -17.27067 -16.91902 -16.69844 -16.44035 -16.05096 -15.53224 -15.42375 -15.32840 -15.25175 -15.02955 -14.95535 -14.67064 -14.52227 -14.23169 -13.94326 -13.62756 -13.49008 -13.29640 -13.16859 -13.11866 -12.97319 -12.93523 -12.85363 -12.81966 -12.40854 -12.30842 -12.25004 -12.07119 -12.02127 -11.97618 -11.92525 -11.76322 -11.67021 -11.60883 -10.99223 -10.77270 -10.64949 -10.04675 -9.69686 -9.03652 -7.99464 -5.28180 1.44818 1.45063 1.55278 1.58606 1.66518 1.98005 2.25682 2.52258 3.34275 3.45311 3.55525 3.62238 3.75549 3.77731 3.93801 4.02585 4.06209 4.08156 4.14734 4.17145 4.29801 4.35118 4.40820 4.47823 4.55834 4.65611 4.68798 4.70552 4.74690 4.75765 4.76681 4.81348 4.86984 4.87287 4.90724 4.98928 5.01710 5.05240 5.10878 5.21590 5.26330 5.29193 5.30168 5.32138 5.33648 5.45592 5.52619 5.60023 6.23750 6.38023 6.59958 7.15283 7.29019 7.30299 8.05233 8.29325 9.23935 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010055 B = 0.002580 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.020993 B =10849.396255 C =13134.709042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C -0.137 4.137 4 C 0.509 3.491 5 O -0.592 6.592 6 N -0.612 5.612 7 C 0.106 3.894 8 C -0.112 4.112 9 C -0.097 4.097 10 C 0.515 3.485 11 O -0.582 6.582 12 N -0.713 5.713 13 C 0.151 3.849 14 H 0.064 0.936 15 C -0.151 4.151 16 C -0.119 4.119 17 C 0.155 3.845 18 N -0.745 5.745 19 C -0.246 4.246 20 H 0.069 0.931 21 C -0.072 4.072 22 N -0.966 5.966 23 Si 0.970 3.030 24 H -0.271 1.271 25 H -0.291 1.291 26 H -0.289 1.289 27 C -0.120 4.120 28 C 0.113 3.887 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.117 0.883 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.411 0.589 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.024 0.976 48 H 0.002 0.998 49 H 0.376 0.624 50 H 0.253 0.747 51 H 0.044 0.956 52 H 0.090 0.910 53 H 0.069 0.931 54 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.041 25.674 -18.349 31.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.134 4.134 3 C -0.194 4.194 4 C 0.299 3.701 5 O -0.473 6.473 6 N -0.345 5.345 7 C -0.015 4.015 8 C -0.150 4.150 9 C -0.118 4.118 10 C 0.303 3.697 11 O -0.462 6.462 12 N -0.365 5.365 13 C 0.046 3.954 14 H 0.082 0.918 15 C -0.209 4.209 16 C -0.157 4.157 17 C 0.028 3.972 18 N -0.388 5.388 19 C -0.378 4.378 20 H 0.087 0.913 21 C -0.265 4.265 22 N -0.616 5.616 23 Si 0.799 3.201 24 H -0.196 1.196 25 H -0.218 1.218 26 H -0.216 1.216 27 C -0.159 4.159 28 C -0.009 4.009 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.135 0.865 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.067 0.933 39 H 0.112 0.888 40 H 0.151 0.849 41 H 0.247 0.753 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.042 0.958 48 H 0.020 0.980 49 H 0.208 0.792 50 H 0.062 0.938 51 H 0.062 0.938 52 H 0.108 0.892 53 H 0.088 0.912 54 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.389 25.254 -18.609 31.372 hybrid contribution -0.612 -1.103 1.475 1.941 sum -0.223 24.152 -17.133 29.613 Atomic orbital electron populations 1.21659 0.93154 1.01753 1.02747 1.21423 0.97834 0.98590 0.95570 1.21756 1.02228 0.92195 1.03237 1.21439 0.80826 0.77950 0.89917 1.90676 1.56711 1.60055 1.39826 1.48375 1.13223 1.58699 1.14160 1.22103 0.95234 0.96708 0.87468 1.21715 1.00446 0.96147 0.96708 1.21353 0.99590 0.93258 0.97604 1.21092 0.76728 0.87827 0.84063 1.90669 1.59955 1.71655 1.23920 1.46123 1.56523 1.18449 1.15402 1.20787 0.95840 0.82973 0.95809 0.91807 1.22060 0.95250 1.02932 1.00660 1.21901 0.96693 1.00781 0.96325 1.20748 0.96058 0.93512 0.86839 1.42561 1.05803 1.64477 1.25944 1.19593 0.88013 1.26820 1.03404 0.91326 1.25524 0.99514 1.01716 0.99700 1.69797 1.23151 1.44158 1.24535 0.85126 0.79302 0.77310 0.78344 1.19559 1.21838 1.21623 1.21839 0.98183 0.97450 0.98401 1.21620 0.99331 0.92968 0.86997 0.93411 0.89304 0.93972 0.86532 0.93519 0.90577 0.89167 0.87969 0.87117 0.93261 0.88808 0.84903 0.75285 0.90915 0.92892 0.90979 0.90366 0.90133 0.95823 0.97966 0.79175 0.93844 0.93752 0.89165 0.91242 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.66 71.98 0.62 -1.41 16 2 C -0.11 -1.46 2.41 -11.54 -0.03 -1.48 16 3 C -0.14 -1.12 9.06 71.98 0.65 -0.47 16 4 C 0.51 10.64 6.86 87.66 0.60 11.24 16 5 O -0.59 -18.34 15.47 -3.03 -0.05 -18.39 16 6 N -0.61 -9.95 2.98 -818.20 -2.44 -12.39 16 7 C 0.11 0.96 5.72 86.37 0.49 1.45 16 8 C -0.11 -1.57 4.65 30.67 0.14 -1.43 16 9 C -0.10 -1.49 2.49 -11.51 -0.03 -1.51 16 10 C 0.52 11.87 7.12 87.66 0.62 12.49 16 11 O -0.58 -17.95 15.64 -3.02 -0.05 -18.00 16 12 N -0.71 -15.54 4.42 -442.52 -1.95 -17.49 16 13 C 0.15 3.79 2.57 44.99 0.12 3.91 16 14 H 0.06 1.93 7.58 -2.39 -0.02 1.91 16 15 C -0.15 -3.08 9.48 71.98 0.68 -2.40 16 16 C -0.12 -3.46 4.87 30.60 0.15 -3.31 16 17 C 0.15 6.12 6.15 86.38 0.53 6.65 16 18 N -0.74 -37.82 5.60 -343.46 -1.92 -39.75 16 19 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 20 H 0.07 3.84 7.83 -2.91 -0.02 3.81 16 21 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 22 N -0.97 -58.95 13.06 21.65 0.28 -58.67 16 23 Si 0.97 46.83 29.55 68.60 2.03 48.85 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 27 C -0.12 -2.18 5.27 30.67 0.16 -2.02 16 28 C 0.11 1.96 6.45 86.31 0.56 2.52 16 29 H 0.05 0.89 7.90 -2.39 -0.02 0.87 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.12 0.96 6.35 -2.39 -0.02 0.95 16 33 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.08 0.40 7.47 -2.39 -0.02 0.38 16 35 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.11 0.58 5.31 -2.39 -0.01 0.57 16 38 H 0.05 0.97 8.13 -2.39 -0.02 0.95 16 39 H 0.09 1.20 8.07 -2.39 -0.02 1.18 16 40 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.41 7.40 8.00 -92.72 -0.74 6.65 16 42 H 0.07 1.39 8.14 -2.38 -0.02 1.38 16 43 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.02 0.92 7.75 -2.39 -0.02 0.90 16 48 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 49 H 0.38 19.94 7.67 -92.71 -0.71 19.23 16 50 H 0.25 14.88 8.31 -92.71 -0.77 14.10 16 51 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 52 H 0.09 1.54 7.52 -2.39 -0.02 1.52 16 53 H 0.07 1.63 7.02 -2.39 -0.02 1.61 16 54 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -79.40 424.17 1.91 -77.50 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: -0.57 Total: 30.98 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 6.58 Total: 7.36 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -6.04 Total: -128.30 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.09 Total: -36.39 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -79.40 1.91 -77.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497241224.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.381 kcal (2) G-P(sol) polarization free energy of solvation -79.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds